Wall clock time and date at job start Tue Mar 31 2020 10:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52837 * 1 3 3 H 1.11143 * 106.59617 * 2 1 4 4 C 1.52208 * 110.62276 * 244.05012 * 2 1 3 5 5 C 1.52763 * 110.75903 * 285.40329 * 4 2 1 6 6 H 1.08683 * 110.34697 * 60.56194 * 5 4 2 7 7 C 1.51065 * 109.10550 * 180.08951 * 5 4 2 8 8 O 1.21281 * 119.99921 * 118.86833 * 7 5 4 9 9 N 1.34776 * 119.99560 * 298.87225 * 7 5 4 10 10 C 1.39125 * 119.99880 * 184.56303 * 9 7 5 11 11 C 1.38649 * 120.28290 * 332.28915 * 10 9 7 12 12 C 1.38226 * 120.03364 * 179.97438 * 11 10 9 13 13 C 1.38859 * 120.61258 * 359.97438 * 12 11 10 14 14 C 1.36460 * 120.58484 * 0.04670 * 13 12 11 15 15 C 1.40743 * 119.93806 * 359.66216 * 14 13 12 16 16 C 1.41071 * 120.30172 * 180.34474 * 15 14 13 17 17 H 1.07996 * 120.00186 * 149.07840 * 16 15 14 18 18 C 1.39961 * 119.99640 * 329.08047 * 16 15 14 19 19 N 1.30850 * 119.99987 * 348.49181 * 18 16 15 20 20 Si 1.86795 * 119.99995 * 168.49455 * 18 16 15 21 21 H 1.48511 * 109.46979 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47604 * 119.99568 * 20 18 16 23 23 H 1.48503 * 109.47395 * 240.00082 * 20 18 16 24 24 C 1.52708 * 108.88869 * 299.11232 * 5 4 2 25 25 C 1.52467 * 110.80425 * 61.67571 * 24 5 4 26 26 C 1.54416 * 107.72153 * 188.38064 * 25 24 5 27 27 C 1.53114 * 110.03324 * 71.57537 * 25 24 5 28 28 C 1.51520 * 111.71515 * 117.01484 * 2 1 3 29 29 H 1.09001 * 109.47038 * 296.65213 * 1 2 3 30 30 H 1.08997 * 109.47102 * 56.65590 * 1 2 3 31 31 H 1.09008 * 109.46798 * 176.65665 * 1 2 3 32 32 H 1.09339 * 109.55026 * 45.88913 * 4 2 1 33 33 H 1.09321 * 109.58896 * 164.84158 * 4 2 1 34 34 H 0.97000 * 120.00516 * 4.55396 * 9 7 5 35 35 H 1.07997 * 119.98038 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.68939 * 180.02562 * 12 11 10 37 37 H 1.08005 * 119.70816 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.03278 * 179.97438 * 14 13 12 39 39 H 0.97005 * 119.99932 * 180.02562 * 19 18 16 40 40 H 1.09296 * 109.27747 * 301.02452 * 24 5 4 41 41 H 1.09300 * 109.27307 * 182.32568 * 24 5 4 42 42 H 1.08996 * 109.46917 * 181.65838 * 26 25 24 43 43 H 1.08991 * 109.46746 * 301.65801 * 26 25 24 44 44 H 1.08999 * 109.46582 * 61.66187 * 26 25 24 45 45 H 1.08996 * 109.47009 * 301.20005 * 27 25 24 46 46 H 1.08995 * 109.47135 * 61.19807 * 27 25 24 47 47 H 1.09006 * 109.46705 * 181.20218 * 27 25 24 48 48 H 1.10245 * 108.74214 * 204.67441 * 28 2 1 49 49 H 1.10216 * 108.80647 * 319.74940 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8458 1.0651 0.0000 4 6 2.0645 -0.6234 -1.2809 5 6 1.9001 -2.1419 -1.2541 6 1 0.8496 -2.4068 -1.1675 7 6 2.4448 -2.7209 -2.5387 8 8 3.3717 -3.5024 -2.5065 9 7 1.9007 -2.3690 -3.7204 10 6 2.3380 -2.9729 -4.8950 11 6 3.6307 -3.4654 -4.9886 12 6 4.0597 -4.0650 -6.1578 13 6 3.2063 -4.1816 -7.2470 14 6 1.9292 -3.7052 -7.1826 15 6 1.4655 -3.0959 -6.0017 16 6 0.1444 -2.6074 -5.9241 17 1 -0.3769 -2.6078 -4.9783 18 6 -0.4908 -2.1222 -7.0731 19 7 0.2013 -1.9101 -8.1631 20 14 -2.3265 -1.7775 -7.0504 21 1 -2.8738 -2.0980 -5.7076 22 1 -2.5648 -0.3433 -7.3531 23 1 -3.0007 -2.6177 -8.0726 24 6 2.6924 -2.7042 -0.0760 25 6 2.1620 -2.1562 1.2442 26 6 3.1352 -2.5946 2.3600 27 6 0.7967 -2.7742 1.5580 28 6 2.0890 -0.6394 1.2541 29 1 -0.3633 0.4610 0.9185 30 1 -0.3633 0.5649 -0.8585 31 1 -0.3633 -1.0260 -0.0599 32 1 1.5221 -0.2185 -2.1397 33 1 3.1240 -0.3781 -1.3924 34 1 1.2041 -1.6947 -3.7521 35 1 4.3028 -3.3805 -4.1475 36 1 5.0676 -4.4471 -6.2245 37 1 3.5566 -4.6531 -8.1534 38 1 1.2731 -3.8003 -8.0353 39 1 -0.2389 -1.5734 -8.9593 40 1 3.7451 -2.4315 -0.1861 41 1 2.6130 -3.7943 -0.0753 42 1 2.7664 -2.2418 3.3231 43 1 3.2055 -3.6822 2.3741 44 1 4.1207 -2.1691 2.1704 45 1 0.1009 -2.5472 0.7504 46 1 0.9008 -3.8549 1.6549 47 1 0.4167 -2.3605 2.4921 48 1 3.1014 -0.2412 1.4325 49 1 1.4807 -0.3226 2.1168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567513513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:17 Heat of formation + Delta-G solvation = -65.230049 kcal Electronic energy + Delta-G solvation = -27202.651145 eV Core-core repulsion = 23706.047410 eV Total energy + Delta-G solvation = -3496.603734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68828 -40.11507 -38.74253 -35.58990 -35.49456 -34.92053 -33.09441 -31.50564 -30.11682 -28.40265 -27.40276 -27.21883 -27.00080 -25.02152 -23.23248 -22.27313 -21.54478 -20.65956 -19.23477 -18.91204 -18.37269 -17.61340 -16.96421 -16.40739 -16.16927 -15.80826 -15.28418 -15.21133 -15.14056 -14.91589 -14.77758 -14.46701 -14.15947 -14.04769 -13.98332 -13.55917 -13.23497 -13.15862 -12.95291 -12.84251 -12.72519 -12.60986 -12.53065 -12.18401 -12.13585 -12.04650 -11.91972 -11.82322 -11.63160 -11.53110 -11.32374 -11.08361 -11.02098 -10.94098 -10.73667 -10.25315 -9.29528 -8.80713 -8.49228 -6.31860 0.84164 1.05498 1.42251 1.51733 1.55791 1.86387 2.22657 2.44128 2.79179 3.59942 3.68099 3.68435 3.73416 4.07485 4.13123 4.22260 4.26261 4.30932 4.42836 4.48041 4.52814 4.62617 4.70671 4.76926 4.81419 4.86584 4.90781 4.98842 4.99726 5.06539 5.09619 5.13941 5.14438 5.18190 5.22462 5.23351 5.28289 5.31222 5.42836 5.45425 5.45823 5.56411 5.59325 5.67693 5.80241 5.84166 6.13510 6.17566 6.26632 6.65474 6.76617 6.95681 7.02988 7.42757 8.39523 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004152 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.689255 B = 6742.772979 C = 8236.274023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 H 0.074 0.926 4 C -0.102 4.102 5 C -0.086 4.086 6 H 0.108 0.892 7 C 0.495 3.505 8 O -0.575 6.575 9 N -0.635 5.635 10 C 0.014 3.986 11 C -0.116 4.116 12 C -0.225 4.225 13 C -0.123 4.123 14 C -0.167 4.167 15 C 0.073 3.927 16 C -0.492 4.492 17 H 0.082 0.918 18 C 0.038 3.962 19 N -0.831 5.831 20 Si 0.981 3.019 21 H -0.254 1.254 22 H -0.267 1.267 23 H -0.272 1.272 24 C -0.079 4.079 25 C -0.053 4.053 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.098 4.098 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.411 0.589 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 5.503 17.366 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.096 4.096 3 H 0.093 0.907 4 C -0.140 4.140 5 C -0.107 4.107 6 H 0.126 0.874 7 C 0.285 3.715 8 O -0.455 6.455 9 N -0.277 5.277 10 C -0.081 4.081 11 C -0.136 4.136 12 C -0.245 4.245 13 C -0.141 4.141 14 C -0.187 4.187 15 C 0.069 3.931 16 C -0.522 4.522 17 H 0.100 0.900 18 C -0.176 4.176 19 N -0.458 5.458 20 Si 0.802 3.198 21 H -0.178 1.178 22 H -0.191 1.191 23 H -0.197 1.197 24 C -0.117 4.117 25 C -0.053 4.053 26 C -0.200 4.200 27 C -0.201 4.201 28 C -0.135 4.135 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.941 5.077 17.212 18.050 hybrid contribution -0.645 0.122 -0.876 1.095 sum -2.586 5.199 16.336 17.337 Atomic orbital electron populations 1.21967 0.94376 1.02166 1.02276 1.20720 0.96288 0.99703 0.92914 0.90743 1.21433 1.01599 0.91629 0.99350 1.21183 1.01812 0.97484 0.90262 0.87447 1.21694 0.82836 0.81054 0.85946 1.90554 1.30043 1.37379 1.87558 1.42992 1.39940 1.40219 1.04555 1.18049 0.93236 1.07465 0.89358 1.21113 0.94518 1.00182 0.97809 1.20666 0.99991 1.09546 0.94297 1.20715 0.94613 1.00913 0.97889 1.20895 0.96224 1.02447 0.99137 1.17743 0.93045 0.91176 0.91129 1.19538 0.97971 1.38350 0.96342 0.90034 1.26675 1.04432 0.92530 0.93996 1.69880 1.39226 1.33510 1.03177 0.85170 0.76415 0.78549 0.79674 1.17758 1.19140 1.19664 1.21217 0.98550 0.99454 0.92498 1.20353 0.96128 0.95386 0.93444 1.22245 0.98584 1.00986 0.98198 1.22043 0.95828 1.00199 1.02009 1.21278 1.01679 0.93130 0.97400 0.91313 0.92730 0.92560 0.91388 0.92501 0.75212 0.86351 0.86889 0.87063 0.87726 0.90315 0.92924 0.93148 0.91205 0.93187 0.93054 0.92448 0.93271 0.91146 0.92310 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.90 71.93 0.64 -1.71 16 2 C -0.08 -1.33 2.60 -11.59 -0.03 -1.36 16 3 H 0.07 1.16 8.29 -1.23 -0.01 1.15 16 4 C -0.10 -2.36 4.50 30.25 0.14 -2.22 16 5 C -0.09 -2.35 2.34 -11.60 -0.03 -2.38 16 6 H 0.11 2.70 6.16 -2.55 -0.02 2.68 16 7 C 0.50 19.05 7.01 87.77 0.62 19.66 16 8 O -0.57 -26.15 12.94 -3.03 -0.04 -26.19 16 9 N -0.64 -26.50 4.97 -301.91 -1.50 -28.00 16 10 C 0.01 0.69 6.45 38.88 0.25 0.94 16 11 C -0.12 -5.82 8.76 22.37 0.20 -5.63 16 12 C -0.23 -10.78 10.04 22.42 0.22 -10.55 16 13 C -0.12 -5.96 9.96 22.00 0.22 -5.74 16 14 C -0.17 -8.89 8.59 22.47 0.19 -8.70 16 15 C 0.07 3.87 5.53 -21.18 -0.12 3.76 16 16 C -0.49 -24.87 8.27 23.38 0.19 -24.67 16 17 H 0.08 3.87 7.39 -2.91 -0.02 3.85 16 18 C 0.04 1.82 5.22 85.26 0.45 2.27 16 19 N -0.83 -42.26 11.03 21.83 0.24 -42.02 16 20 Si 0.98 36.31 29.57 68.60 2.03 38.34 16 21 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 22 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 23 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 24 C -0.08 -2.03 3.09 30.32 0.09 -1.94 16 25 C -0.05 -0.97 0.71 -52.21 -0.04 -1.01 16 26 C -0.14 -2.37 8.10 72.46 0.59 -1.79 16 27 C -0.14 -2.40 8.03 72.02 0.58 -1.82 16 28 C -0.10 -1.54 4.12 29.73 0.12 -1.42 16 29 H 0.07 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.92 5.01 -2.38 -0.01 0.91 16 32 H 0.07 1.58 7.43 -2.21 -0.02 1.57 16 33 H 0.06 1.42 8.17 -2.22 -0.02 1.40 16 34 H 0.41 15.49 7.08 -92.71 -0.66 14.83 16 35 H 0.12 5.95 5.66 -2.91 -0.02 5.93 16 36 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.10 5.74 6.41 -2.91 -0.02 5.72 16 39 H 0.29 13.21 8.30 -92.70 -0.77 12.44 16 40 H 0.05 1.50 8.06 -2.23 -0.02 1.48 16 41 H 0.05 1.46 8.04 -2.23 -0.02 1.44 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 0.87 8.05 -2.39 -0.02 0.86 16 45 H 0.06 0.99 4.75 -2.39 -0.01 0.98 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.94 8.05 -2.38 -0.02 0.92 16 48 H 0.06 0.92 7.92 -1.72 -0.01 0.91 16 49 H 0.08 0.99 7.87 -1.74 -0.01 0.98 16 Total: -1.00 -62.01 371.44 5.32 -56.68 By element: Atomic # 1 Polarization: 45.19 SS G_CDS: 0.31 Total: 45.50 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 4.28 Total: -44.31 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.26 Total: -70.02 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -62.01 5.32 -56.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567513513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.547 kcal (2) G-P(sol) polarization free energy of solvation -62.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds