Wall clock time and date at job start Tue Mar 31 2020 10:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46869 * 2 1 4 4 C 1.52999 * 109.47595 * 120.00547 * 2 1 3 5 5 C 1.52989 * 109.47359 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47395 * 300.00098 * 5 4 2 7 7 H 1.09000 * 109.46676 * 300.00207 * 6 5 4 8 8 C 1.50700 * 109.47259 * 180.02562 * 6 5 4 9 9 O 1.21280 * 119.99773 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99924 * 179.97438 * 8 6 5 11 11 C 1.46502 * 120.00318 * 175.00396 * 10 8 6 12 12 H 1.09007 * 109.46775 * 38.69881 * 11 10 8 13 13 C 1.53001 * 109.47175 * 278.70611 * 11 10 8 14 14 C 1.50702 * 109.47062 * 174.17953 * 13 11 10 15 15 H 1.07994 * 119.99931 * 354.83449 * 14 13 11 16 16 C 1.37875 * 119.99897 * 174.83471 * 14 13 11 17 17 N 1.31516 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99883 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47259 * 60.00095 * 18 16 14 20 20 H 1.48501 * 109.47124 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47324 * 299.99852 * 18 16 14 22 22 C 1.50690 * 109.47322 * 158.70052 * 11 10 8 23 23 C 1.38242 * 120.00179 * 39.72809 * 22 11 10 24 24 C 1.38236 * 120.00073 * 179.78642 * 23 22 11 25 25 C 1.38238 * 120.00006 * 0.46557 * 24 23 22 26 26 C 1.38238 * 119.99939 * 359.76721 * 25 24 23 27 27 C 1.38236 * 120.00060 * 220.00399 * 22 11 10 28 28 C 1.52999 * 109.46948 * 59.99650 * 6 5 4 29 29 C 1.52996 * 109.47595 * 300.00334 * 28 6 5 30 30 H 1.09004 * 109.47077 * 299.99331 * 1 2 3 31 31 H 1.09004 * 109.47562 * 59.99327 * 1 2 3 32 32 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46978 * 59.99592 * 4 2 1 34 34 H 1.09004 * 109.47007 * 300.00164 * 4 2 1 35 35 H 1.09000 * 109.47556 * 179.97438 * 5 4 2 36 36 H 1.09010 * 109.47356 * 59.99872 * 5 4 2 37 37 H 0.97004 * 120.00236 * 355.01002 * 10 8 6 38 38 H 1.09006 * 109.46604 * 294.17535 * 13 11 10 39 39 H 1.08992 * 109.47258 * 54.17594 * 13 11 10 40 40 H 0.96999 * 119.99675 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99720 * 0.02562 * 23 22 11 42 42 H 1.08002 * 119.99892 * 180.25409 * 24 23 22 43 43 H 1.07996 * 119.99987 * 179.79025 * 25 24 23 44 44 H 1.08002 * 119.99893 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00025 * 359.97438 * 27 22 11 46 46 H 1.09000 * 109.46978 * 60.00742 * 28 6 5 47 47 H 1.09004 * 109.47007 * 180.02562 * 28 6 5 48 48 H 1.08999 * 109.46869 * 300.00547 * 29 28 6 49 49 H 1.08995 * 109.47291 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5700 -0.7219 1.2487 6 6 4.0795 -1.4433 -0.0006 7 1 3.7158 -2.4709 -0.0004 8 6 5.5865 -1.4444 -0.0006 9 8 6.1932 -0.9193 0.9088 10 7 6.2599 -2.0288 -1.0112 11 6 7.7208 -1.9354 -1.0687 12 1 8.1302 -2.0214 -0.0621 13 6 8.1224 -0.5866 -1.6690 14 6 9.6196 -0.4305 -1.5970 15 1 10.2165 -1.1756 -1.0921 16 6 10.2273 0.6634 -2.1758 17 7 9.5005 1.5704 -2.7912 18 14 12.0830 0.8572 -2.0860 19 1 12.7344 -0.3044 -2.7429 20 1 12.4844 2.1070 -2.7802 21 1 12.5057 0.9227 -0.6639 22 6 8.2620 -3.0488 -1.9279 23 6 7.6002 -3.4123 -3.0860 24 6 8.0991 -4.4307 -3.8765 25 6 9.2544 -5.0921 -3.5040 26 6 9.9135 -4.7319 -2.3435 27 6 9.4170 -3.7105 -1.5552 28 6 3.5694 -0.7220 -1.2497 29 6 2.0394 -0.7215 -1.2494 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6767 -1.7490 1.2491 34 1 1.6767 -0.2076 2.1392 35 1 3.9334 -1.2354 2.1389 36 1 3.9337 0.3057 1.2486 37 1 5.7773 -2.5112 -1.7007 38 1 7.8022 -0.5425 -2.7100 39 1 7.6459 0.2172 -1.1079 40 1 9.9281 2.3398 -3.1986 41 1 6.6956 -2.8980 -3.3751 42 1 7.5843 -4.7119 -4.7833 43 1 9.6422 -5.8900 -4.1198 44 1 10.8159 -5.2489 -2.0523 45 1 9.9318 -3.4293 -0.6484 46 1 3.9331 0.3055 -1.2499 47 1 3.9320 -1.2363 -2.1398 48 1 1.6758 -1.7490 -1.2492 49 1 1.6761 -0.2072 -2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567991091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:25 Heat of formation + Delta-G solvation = -52.600078 kcal Electronic energy + Delta-G solvation = -26664.076550 eV Core-core repulsion = 23168.020492 eV Total energy + Delta-G solvation = -3496.056058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.04947 -38.91221 -37.71141 -35.06083 -33.02558 -32.56625 -31.08219 -30.62735 -30.36425 -28.60690 -26.94898 -24.75354 -22.64445 -22.44818 -22.26527 -21.87267 -20.22833 -19.70421 -19.35855 -17.31525 -16.53371 -15.92871 -15.53701 -15.05362 -14.77584 -14.53483 -14.34994 -14.28002 -14.23040 -13.80478 -13.52814 -13.17296 -12.94960 -12.75002 -12.58047 -12.36348 -12.32476 -12.18190 -12.07661 -11.54689 -11.48890 -11.14880 -11.08192 -10.95426 -10.83255 -10.72189 -10.68620 -10.61876 -10.35218 -10.04252 -9.98974 -9.90549 -9.35598 -9.01895 -8.47891 -8.46534 -8.32100 -7.99931 -5.97629 -3.98781 1.83088 1.86366 3.14906 3.36067 3.39702 3.42255 3.71373 4.28808 4.49167 4.60079 4.63748 4.71802 5.04986 5.08460 5.23044 5.28400 5.29186 5.37398 5.38061 5.40585 5.43756 5.47868 5.50201 5.53257 5.56629 5.69994 5.78455 5.82149 5.92690 5.99528 6.00230 6.07701 6.15851 6.20566 6.22787 6.24489 6.34763 6.40186 6.49062 6.53004 6.76406 6.85596 6.90639 6.92125 7.18683 7.44420 7.65569 7.72155 8.00190 8.08672 8.38748 8.78276 9.05055 9.63922 11.14042 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.003841 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.751341 B = 7288.658862 C = 8664.301896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.099 4.099 6 C -0.104 4.104 7 H 0.090 0.910 8 C 0.514 3.486 9 O -0.536 6.536 10 N -0.724 5.724 11 C 0.180 3.820 12 H 0.084 0.916 13 C 0.027 3.973 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.046 4.046 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.136 4.136 26 C -0.121 4.121 27 C -0.099 4.099 28 C -0.111 4.111 29 C -0.110 4.110 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.390 0.610 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.768 -10.254 1.357 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.137 4.137 6 C -0.125 4.125 7 H 0.108 0.892 8 C 0.299 3.701 9 O -0.413 6.413 10 N -0.375 5.375 11 C 0.077 3.923 12 H 0.102 0.898 13 C -0.011 4.011 14 C -0.551 4.551 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.046 4.046 23 C -0.138 4.138 24 C -0.139 4.139 25 C -0.154 4.154 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.149 4.149 29 C -0.148 4.148 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.224 0.776 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.305 -9.685 1.918 17.381 hybrid contribution 0.986 0.050 -0.567 1.138 sum -13.320 -9.635 1.351 16.494 Atomic orbital electron populations 1.21828 0.95496 1.01562 1.01483 1.21189 0.95116 1.00066 0.95122 0.91011 1.21608 0.95492 1.00426 0.97453 1.21331 0.94338 1.01647 0.96408 1.21328 0.92152 1.01390 0.97676 0.89225 1.20504 0.89539 0.78191 0.81851 1.90703 1.70231 1.44606 1.35738 1.46300 1.08334 1.55654 1.27197 1.20308 0.77321 0.95767 0.98898 0.89779 1.19396 0.96674 0.88959 0.96082 1.21019 0.91667 1.07117 1.35262 0.92522 1.24933 0.97976 0.95853 0.95299 1.69953 1.35271 1.11490 1.36645 0.86691 0.85941 0.77358 0.78271 1.20236 1.21331 1.20176 1.19914 0.95149 0.94302 0.95252 1.20831 1.00456 0.97650 0.94894 1.20973 0.96813 0.96890 0.99248 1.20976 0.96425 1.00660 0.97307 1.21043 0.99564 0.97893 0.95377 1.20981 0.95681 0.94915 1.00159 1.21526 0.95601 1.01661 0.96142 1.21579 0.94993 1.00603 0.97617 0.92857 0.92833 0.92857 0.92138 0.91893 0.91356 0.91032 0.77559 0.95953 0.95810 0.93022 0.86749 0.86734 0.86890 0.86639 0.86101 0.90977 0.91424 0.91961 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.10 -0.90 2.72 -90.62 -0.25 -1.15 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.09 5.20 -26.74 -0.14 -1.23 16 5 C -0.10 -1.26 4.49 -26.74 -0.12 -1.38 16 6 C -0.10 -1.34 2.52 -91.77 -0.23 -1.57 16 7 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.51 9.08 7.01 -10.99 -0.08 9.00 16 9 O -0.54 -11.91 15.68 5.56 0.09 -11.82 16 10 N -0.72 -12.43 4.90 -54.93 -0.27 -12.70 16 11 C 0.18 3.75 2.19 -69.09 -0.15 3.60 16 12 H 0.08 1.91 7.49 -51.92 -0.39 1.52 16 13 C 0.03 0.69 4.68 -27.88 -0.13 0.56 16 14 C -0.51 -14.38 8.53 -34.44 -0.29 -14.67 16 15 H 0.06 1.54 6.79 -52.49 -0.36 1.18 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.05 -0.86 4.50 -104.63 -0.47 -1.33 16 23 C -0.12 -1.98 9.02 -39.58 -0.36 -2.34 16 24 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.14 -1.97 10.05 -39.58 -0.40 -2.36 16 26 C -0.12 -1.89 10.05 -39.58 -0.40 -2.28 16 27 C -0.10 -1.78 8.84 -39.58 -0.35 -2.13 16 28 C -0.11 -1.31 5.11 -26.73 -0.14 -1.45 16 29 C -0.11 -1.04 5.20 -26.73 -0.14 -1.18 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.07 1.04 8.10 -51.92 -0.42 0.62 16 37 H 0.39 5.47 6.45 -40.82 -0.26 5.21 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.11 1.70 6.95 -52.49 -0.36 1.33 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.12 2.15 7.84 -52.49 -0.41 1.73 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -32.81 389.07 -10.89 -43.70 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.50 Total: 5.52 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.79 Total: -21.25 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.47 Total: -39.02 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.81 -10.89 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567991091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.896 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds