Wall clock time and date at job start Tue Mar 31 2020 10:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46869 * 2 1 4 4 C 1.52999 * 109.47595 * 120.00547 * 2 1 3 5 5 C 1.52989 * 109.47359 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47395 * 300.00098 * 5 4 2 7 7 H 1.09000 * 109.46676 * 300.00207 * 6 5 4 8 8 C 1.50700 * 109.47259 * 180.02562 * 6 5 4 9 9 O 1.21280 * 119.99773 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99924 * 179.97438 * 8 6 5 11 11 C 1.46502 * 120.00318 * 175.00396 * 10 8 6 12 12 H 1.09007 * 109.46775 * 38.69881 * 11 10 8 13 13 C 1.53001 * 109.47175 * 278.70611 * 11 10 8 14 14 C 1.50702 * 109.47062 * 174.17953 * 13 11 10 15 15 H 1.07994 * 119.99931 * 354.83449 * 14 13 11 16 16 C 1.37875 * 119.99897 * 174.83471 * 14 13 11 17 17 N 1.31516 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99883 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47259 * 60.00095 * 18 16 14 20 20 H 1.48501 * 109.47124 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47324 * 299.99852 * 18 16 14 22 22 C 1.50690 * 109.47322 * 158.70052 * 11 10 8 23 23 C 1.38242 * 120.00179 * 39.72809 * 22 11 10 24 24 C 1.38236 * 120.00073 * 179.78642 * 23 22 11 25 25 C 1.38238 * 120.00006 * 0.46557 * 24 23 22 26 26 C 1.38238 * 119.99939 * 359.76721 * 25 24 23 27 27 C 1.38236 * 120.00060 * 220.00399 * 22 11 10 28 28 C 1.52999 * 109.46948 * 59.99650 * 6 5 4 29 29 C 1.52996 * 109.47595 * 300.00334 * 28 6 5 30 30 H 1.09004 * 109.47077 * 299.99331 * 1 2 3 31 31 H 1.09004 * 109.47562 * 59.99327 * 1 2 3 32 32 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46978 * 59.99592 * 4 2 1 34 34 H 1.09004 * 109.47007 * 300.00164 * 4 2 1 35 35 H 1.09000 * 109.47556 * 179.97438 * 5 4 2 36 36 H 1.09010 * 109.47356 * 59.99872 * 5 4 2 37 37 H 0.97004 * 120.00236 * 355.01002 * 10 8 6 38 38 H 1.09006 * 109.46604 * 294.17535 * 13 11 10 39 39 H 1.08992 * 109.47258 * 54.17594 * 13 11 10 40 40 H 0.96999 * 119.99675 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99720 * 0.02562 * 23 22 11 42 42 H 1.08002 * 119.99892 * 180.25409 * 24 23 22 43 43 H 1.07996 * 119.99987 * 179.79025 * 25 24 23 44 44 H 1.08002 * 119.99893 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00025 * 359.97438 * 27 22 11 46 46 H 1.09000 * 109.46978 * 60.00742 * 28 6 5 47 47 H 1.09004 * 109.47007 * 180.02562 * 28 6 5 48 48 H 1.08999 * 109.46869 * 300.00547 * 29 28 6 49 49 H 1.08995 * 109.47291 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5700 -0.7219 1.2487 6 6 4.0795 -1.4433 -0.0006 7 1 3.7158 -2.4709 -0.0004 8 6 5.5865 -1.4444 -0.0006 9 8 6.1932 -0.9193 0.9088 10 7 6.2599 -2.0288 -1.0112 11 6 7.7208 -1.9354 -1.0687 12 1 8.1302 -2.0214 -0.0621 13 6 8.1224 -0.5866 -1.6690 14 6 9.6196 -0.4305 -1.5970 15 1 10.2165 -1.1756 -1.0921 16 6 10.2273 0.6634 -2.1758 17 7 9.5005 1.5704 -2.7912 18 14 12.0830 0.8572 -2.0860 19 1 12.7344 -0.3044 -2.7429 20 1 12.4844 2.1070 -2.7802 21 1 12.5057 0.9227 -0.6639 22 6 8.2620 -3.0488 -1.9279 23 6 7.6002 -3.4123 -3.0860 24 6 8.0991 -4.4307 -3.8765 25 6 9.2544 -5.0921 -3.5040 26 6 9.9135 -4.7319 -2.3435 27 6 9.4170 -3.7105 -1.5552 28 6 3.5694 -0.7220 -1.2497 29 6 2.0394 -0.7215 -1.2494 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6767 -1.7490 1.2491 34 1 1.6767 -0.2076 2.1392 35 1 3.9334 -1.2354 2.1389 36 1 3.9337 0.3057 1.2486 37 1 5.7773 -2.5112 -1.7007 38 1 7.8022 -0.5425 -2.7100 39 1 7.6459 0.2172 -1.1079 40 1 9.9281 2.3398 -3.1986 41 1 6.6956 -2.8980 -3.3751 42 1 7.5843 -4.7119 -4.7833 43 1 9.6422 -5.8900 -4.1198 44 1 10.8159 -5.2489 -2.0523 45 1 9.9318 -3.4293 -0.6484 46 1 3.9331 0.3055 -1.2499 47 1 3.9320 -1.2363 -2.1398 48 1 1.6758 -1.7490 -1.2492 49 1 1.6761 -0.2072 -2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567991091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:24 Heat of formation + Delta-G solvation = -70.567094 kcal Electronic energy + Delta-G solvation = -26664.855658 eV Core-core repulsion = 23168.020492 eV Total energy + Delta-G solvation = -3496.835166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41959 -40.14218 -38.85581 -36.68903 -34.90802 -33.82765 -32.41919 -31.71067 -31.53517 -30.38839 -27.98113 -26.46662 -24.05268 -23.69302 -23.53540 -23.01985 -21.45122 -20.96185 -20.60424 -18.77872 -18.41928 -17.30133 -16.89742 -16.68446 -16.22659 -15.97707 -15.71413 -15.18743 -15.13493 -15.07886 -14.90212 -14.49582 -14.26894 -14.18470 -14.09314 -13.77200 -13.50170 -13.14987 -13.12722 -13.07473 -12.92819 -12.68165 -12.54506 -12.35339 -12.01365 -11.98105 -11.89203 -11.87608 -11.65891 -11.55588 -11.38188 -11.23319 -10.91367 -10.62555 -10.56578 -10.00775 -9.70949 -9.45070 -8.21326 -6.30272 0.55101 0.60477 1.35502 1.39221 1.46137 1.69424 2.27943 2.42956 3.00249 3.13236 3.63538 3.71709 3.77202 3.86180 4.04378 4.16455 4.17786 4.24306 4.25914 4.34807 4.42597 4.49292 4.52607 4.58324 4.64433 4.72906 4.81126 4.82458 4.87109 4.94713 5.02377 5.06415 5.13394 5.14301 5.20033 5.23052 5.27367 5.31674 5.33955 5.45119 5.45508 5.47534 5.54400 5.63004 5.65381 5.68911 5.73470 5.90108 6.19402 6.22563 6.64865 6.81403 7.35112 7.37632 8.90931 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.003841 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.751341 B = 7288.658862 C = 8664.301896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.053 0.947 4 C -0.104 4.104 5 C -0.099 4.099 6 C -0.092 4.092 7 H 0.125 0.875 8 C 0.504 3.496 9 O -0.591 6.591 10 N -0.712 5.712 11 C 0.197 3.803 12 H 0.054 0.946 13 C 0.042 3.958 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.958 3.042 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.271 1.271 22 C -0.072 4.072 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.110 4.110 29 C -0.103 4.103 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.408 0.592 38 H 0.002 0.998 39 H -0.025 1.025 40 H 0.262 0.738 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.040 0.960 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.631 -13.122 -0.346 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.071 0.929 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.113 4.113 7 H 0.143 0.857 8 C 0.293 3.707 9 O -0.471 6.471 10 N -0.364 5.364 11 C 0.092 3.908 12 H 0.073 0.927 13 C 0.004 3.996 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.782 3.218 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.073 4.073 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.148 4.148 29 C -0.140 4.140 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.246 0.754 38 H 0.021 0.979 39 H -0.007 1.007 40 H 0.071 0.929 41 H 0.143 0.857 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.159 0.841 45 H 0.126 0.874 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.197 -12.585 0.194 19.732 hybrid contribution 1.269 0.925 -0.045 1.571 sum -13.928 -11.659 0.149 18.164 Atomic orbital electron populations 1.21775 0.93655 1.02512 1.01899 1.21199 0.96574 0.99027 0.94931 0.92870 1.21568 0.92566 1.01877 0.98076 1.21318 0.96886 0.99547 0.95940 1.21369 0.87961 1.03579 0.98425 0.85682 1.21542 0.91734 0.76660 0.80808 1.90670 1.71808 1.46752 1.37840 1.46139 1.07051 1.55510 1.27705 1.19707 0.79405 0.94306 0.97385 0.92738 1.19126 0.95637 0.90587 0.94207 1.21400 0.92837 1.07286 1.34932 0.92103 1.25860 1.03152 0.95455 0.94878 1.70094 1.37396 1.12103 1.37646 0.85606 0.79807 0.77821 0.78525 1.18749 1.20728 1.19649 1.19759 0.96456 0.94663 0.96388 1.21044 1.00917 0.98474 0.94312 1.21402 0.96839 0.95535 0.99773 1.21462 0.95692 1.00767 0.96728 1.21366 1.00405 0.96950 0.95389 1.21082 0.95898 0.96521 1.00755 1.21535 0.97859 0.99655 0.95726 1.21562 0.92418 1.02121 0.97947 0.92575 0.92410 0.91572 0.90018 0.91252 0.92366 0.94200 0.75417 0.97941 1.00660 0.92917 0.85668 0.83214 0.83154 0.84118 0.87357 0.94154 0.90517 0.89623 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 71.98 0.66 -1.18 16 2 C -0.10 -1.72 2.72 -10.79 -0.03 -1.75 16 3 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.10 -1.88 5.20 30.59 0.16 -1.72 16 5 C -0.10 -2.60 4.49 30.59 0.14 -2.46 16 6 C -0.09 -2.39 2.52 -11.54 -0.03 -2.42 16 7 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 8 C 0.50 18.96 7.01 87.66 0.61 19.57 16 9 O -0.59 -28.59 15.68 -3.03 -0.05 -28.64 16 10 N -0.71 -25.67 4.90 -446.10 -2.19 -27.85 16 11 C 0.20 8.72 2.19 44.24 0.10 8.82 16 12 H 0.05 2.71 7.49 -2.38 -0.02 2.69 16 13 C 0.04 2.35 4.68 29.85 0.14 2.49 16 14 C -0.53 -30.92 8.53 25.60 0.22 -30.70 16 15 H 0.06 3.44 6.79 -2.91 -0.02 3.42 16 16 C 0.00 0.25 5.46 84.65 0.46 0.72 16 17 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 18 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 19 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 C -0.07 -2.76 4.50 -19.87 -0.09 -2.85 16 23 C -0.13 -4.12 9.02 22.27 0.20 -3.92 16 24 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 25 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 26 C -0.12 -3.58 10.05 22.27 0.22 -3.36 16 27 C -0.12 -4.51 8.84 22.27 0.20 -4.31 16 28 C -0.11 -2.58 5.11 30.59 0.16 -2.42 16 29 C -0.10 -1.73 5.20 30.59 0.16 -1.57 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.04 1.27 8.10 -2.38 -0.02 1.25 16 37 H 0.41 11.49 6.45 -92.71 -0.60 10.90 16 38 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 39 H -0.02 -1.60 8.08 -2.39 -0.02 -1.61 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.13 3.58 6.95 -2.91 -0.02 3.56 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 44 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 45 H 0.11 4.05 7.84 -2.91 -0.02 4.03 16 46 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.64 7.69 -2.39 -0.02 1.62 16 48 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.13 389.07 4.11 -73.01 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.31 Total: 26.61 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 3.73 Total: -32.93 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.90 Total: -86.05 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -77.13 4.11 -73.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567991091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.444 kcal (2) G-P(sol) polarization free energy of solvation -77.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds