Wall clock time and date at job start Tue Mar 31 2020 10:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.52997 * 109.47092 * 120.00120 * 2 1 3 5 5 C 1.52999 * 109.47592 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46626 * 300.00035 * 5 4 2 7 7 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 8 8 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 6 5 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 6 5 11 11 C 1.46500 * 120.00169 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46886 * 34.99624 * 11 10 8 13 13 C 1.52995 * 109.47363 * 154.99498 * 11 10 8 14 14 C 1.50702 * 109.47483 * 295.00415 * 13 11 10 15 15 H 1.08006 * 119.99527 * 359.97438 * 14 13 11 16 16 C 1.37868 * 120.00283 * 179.97438 * 14 13 11 17 17 N 1.31521 * 120.00232 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00231 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47108 * 89.99695 * 18 16 14 20 20 H 1.48494 * 109.47448 * 209.99905 * 18 16 14 21 21 H 1.48496 * 109.46872 * 330.00165 * 18 16 14 22 22 C 1.50698 * 109.47112 * 274.99749 * 11 10 8 23 23 C 1.38227 * 120.00071 * 319.72682 * 22 11 10 24 24 C 1.38239 * 120.00124 * 179.81146 * 23 22 11 25 25 C 1.38237 * 119.99737 * 0.41403 * 24 23 22 26 26 C 1.38237 * 119.99989 * 359.81616 * 25 24 23 27 27 C 1.38228 * 119.99901 * 359.97438 * 26 25 24 28 28 C 1.52997 * 109.47164 * 59.99702 * 6 5 4 29 29 C 1.52996 * 109.46969 * 240.00061 * 2 1 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47067 * 300.00027 * 1 2 3 32 32 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 33 33 H 1.09000 * 109.47140 * 59.99774 * 4 2 1 34 34 H 1.09002 * 109.47045 * 299.99867 * 4 2 1 35 35 H 1.08993 * 109.47839 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47160 * 59.99666 * 5 4 2 37 37 H 0.96996 * 119.99844 * 359.97438 * 10 8 6 38 38 H 1.09009 * 109.46952 * 55.00058 * 13 11 10 39 39 H 1.08996 * 109.47558 * 174.99889 * 13 11 10 40 40 H 0.96998 * 120.00429 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99834 * 359.97438 * 23 22 11 42 42 H 1.07997 * 120.00008 * 180.21356 * 24 23 22 43 43 H 1.07994 * 119.99675 * 179.79252 * 25 24 23 44 44 H 1.07995 * 119.99631 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.00003 * 179.97438 * 27 26 25 46 46 H 1.09000 * 109.47140 * 60.00051 * 28 6 5 47 47 H 1.09001 * 109.47230 * 179.97438 * 28 6 5 48 48 H 1.08992 * 109.47534 * 60.00418 * 29 2 1 49 49 H 1.08996 * 109.47134 * 299.99612 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 1 3.7175 -2.4695 0.0001 8 6 5.5875 -1.4407 0.0004 9 8 6.1935 -0.9147 0.9098 10 7 6.2618 -2.0234 -1.0107 11 6 7.7268 -2.0229 -1.0104 12 1 8.0899 -2.1130 0.0134 13 6 8.2374 -3.2038 -1.8383 14 6 7.8390 -4.4949 -1.1710 15 1 7.2780 -4.4751 -0.2482 16 6 8.1905 -5.7013 -1.7383 17 7 7.8432 -6.8281 -1.1556 18 14 9.1601 -5.7356 -3.3346 19 1 10.6137 -5.7376 -3.0308 20 1 8.8124 -6.9604 -4.0988 21 1 8.8251 -4.5359 -4.1430 22 6 8.2288 -0.7347 -1.6099 23 6 7.5982 -0.1947 -2.7150 24 6 8.0563 0.9891 -3.2626 25 6 9.1504 1.6283 -2.7101 26 6 9.7840 1.0858 -1.6078 27 6 9.3232 -0.0956 -1.0577 28 6 3.5705 -0.7204 -1.2489 29 6 2.0400 -0.7212 -1.2492 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -1.7489 1.2492 34 1 1.6767 -0.2074 2.1392 35 1 3.9333 -1.2350 2.1393 36 1 3.9330 0.3070 1.2499 37 1 5.7771 -2.4437 -1.7382 38 1 7.8029 -3.1620 -2.8372 39 1 9.3237 -3.1531 -1.9122 40 1 8.0908 -7.6769 -1.5544 41 1 6.7459 -0.6963 -3.1491 42 1 7.5614 1.4127 -4.1240 43 1 9.5103 2.5513 -3.1400 44 1 10.6390 1.5850 -1.1765 45 1 9.8185 -0.5197 -0.1967 46 1 3.9335 0.3074 -1.2487 47 1 3.9345 -1.2337 -2.1389 48 1 1.6768 -0.2074 -2.1392 49 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567991092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:28 Heat of formation + Delta-G solvation = -52.857658 kcal Electronic energy + Delta-G solvation = -26873.815817 eV Core-core repulsion = 23377.748590 eV Total energy + Delta-G solvation = -3496.067227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06439 -38.95406 -37.69288 -35.25300 -32.93324 -32.55268 -31.16813 -30.65183 -30.48857 -29.29172 -26.95682 -24.94861 -22.64652 -22.46942 -22.07562 -21.76998 -20.20570 -19.78538 -19.42994 -17.20205 -16.72973 -16.33798 -15.75387 -15.19959 -14.87993 -14.41384 -14.35488 -14.30751 -14.23878 -13.85599 -13.47497 -13.25384 -13.09869 -12.89263 -12.63090 -12.44768 -12.34683 -12.25683 -12.16422 -11.84794 -11.48941 -11.35083 -11.12530 -11.09449 -10.92486 -10.73775 -10.68620 -10.63435 -10.34522 -10.16205 -10.02418 -9.85817 -9.35556 -9.16960 -8.64395 -8.60863 -8.44083 -8.29004 -6.12150 -4.11911 1.68167 1.70826 3.18069 3.24887 3.33142 3.35241 3.74177 4.15581 4.37030 4.60610 4.64212 4.72298 5.06452 5.08668 5.17381 5.18535 5.21049 5.26040 5.32640 5.37916 5.44673 5.45743 5.50841 5.52425 5.58588 5.70220 5.80604 5.81495 5.83836 5.84416 6.00202 6.06067 6.08487 6.14325 6.20277 6.21575 6.26164 6.31869 6.37213 6.43601 6.48852 6.73811 6.76288 6.83272 6.93566 7.06539 7.30711 7.36050 7.64312 8.14651 8.43193 8.81570 8.93644 9.48764 11.00627 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.004607 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.800297 B = 6076.517542 C = 7923.306803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.097 4.097 6 C -0.107 4.107 7 H 0.097 0.903 8 C 0.517 3.483 9 O -0.550 6.550 10 N -0.700 5.700 11 C 0.193 3.807 12 H 0.091 0.909 13 C -0.014 4.014 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.074 4.074 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.108 4.108 28 C -0.109 4.109 29 C -0.112 4.112 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.400 0.600 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 15.375 -2.371 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.135 4.135 6 C -0.128 4.128 7 H 0.115 0.885 8 C 0.303 3.697 9 O -0.428 6.428 10 N -0.349 5.349 11 C 0.089 3.911 12 H 0.109 0.891 13 C -0.051 4.051 14 C -0.558 4.558 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.076 4.076 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.140 4.140 27 C -0.127 4.127 28 C -0.147 4.147 29 C -0.149 4.149 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.048 15.528 -1.736 18.055 hybrid contribution 0.406 -0.489 -1.246 1.399 sum -8.642 15.039 -2.982 17.600 Atomic orbital electron populations 1.21833 0.95488 1.01741 1.01367 1.21167 0.95134 0.99743 0.95224 0.91312 1.21624 0.95540 1.00691 0.97300 1.21305 0.94326 1.01126 0.96710 1.21336 0.92184 1.01974 0.97302 0.88538 1.20523 0.89619 0.77779 0.81803 1.90645 1.70418 1.45690 1.36079 1.45911 1.07108 1.57001 1.24909 1.19933 0.79232 0.90998 1.00947 0.89133 1.19867 0.96822 0.92975 0.95456 1.21014 1.36267 0.88287 1.10231 0.90623 1.24979 0.95408 0.95578 0.97092 1.69905 1.46560 0.97501 1.39670 0.86862 0.80897 0.77716 0.84323 1.20210 1.21348 1.18982 1.20581 0.95178 0.96781 0.95033 1.20916 0.99976 0.95811 0.95986 1.21049 0.97272 0.96002 1.00005 1.21011 0.96925 1.00056 0.97220 1.21057 0.99969 0.96290 0.96729 1.21049 0.96623 0.95156 0.99824 1.21514 0.95796 1.00896 0.96467 1.21592 0.94948 1.00947 0.97442 0.92693 0.92886 0.92906 0.91870 0.91960 0.91255 0.91478 0.76544 0.95904 0.95352 0.92637 0.86543 0.86703 0.86793 0.86535 0.86068 0.91589 0.91388 0.91898 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.09 -0.87 2.72 -90.62 -0.25 -1.12 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 5 C -0.10 -1.25 4.49 -26.73 -0.12 -1.37 16 6 C -0.11 -1.45 2.53 -91.77 -0.23 -1.68 16 7 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 8 C 0.52 9.13 7.11 -10.99 -0.08 9.05 16 9 O -0.55 -11.63 15.65 5.56 0.09 -11.54 16 10 N -0.70 -12.44 3.93 -54.94 -0.22 -12.66 16 11 C 0.19 3.83 2.11 -69.09 -0.15 3.69 16 12 H 0.09 2.01 7.44 -51.93 -0.39 1.62 16 13 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 14 C -0.52 -13.92 9.39 -34.44 -0.32 -14.24 16 15 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 18 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 22 C -0.07 -1.32 4.91 -104.63 -0.51 -1.84 16 23 C -0.11 -1.72 9.32 -39.59 -0.37 -2.09 16 24 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 25 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 26 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 27 C -0.11 -1.81 9.67 -39.58 -0.38 -2.19 16 28 C -0.11 -1.22 5.10 -26.71 -0.14 -1.35 16 29 C -0.11 -1.05 5.21 -26.71 -0.14 -1.19 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.40 6.50 8.02 -40.82 -0.33 6.17 16 38 H 0.02 0.50 7.20 -51.92 -0.37 0.13 16 39 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 1.70 7.73 -52.49 -0.41 1.30 16 42 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.12 1.95 8.04 -52.48 -0.42 1.53 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -31.24 389.53 -10.65 -41.89 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.62 Total: 7.69 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -3.87 Total: -21.47 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.56 Total: -38.61 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.24 -10.65 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567991092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.967 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds