Wall clock time and date at job start Tue Mar 31 2020 10:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.52997 * 109.47092 * 120.00120 * 2 1 3 5 5 C 1.52999 * 109.47592 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46626 * 300.00035 * 5 4 2 7 7 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 8 8 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 6 5 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 6 5 11 11 C 1.46500 * 120.00169 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46886 * 34.99624 * 11 10 8 13 13 C 1.52995 * 109.47363 * 154.99498 * 11 10 8 14 14 C 1.50702 * 109.47483 * 295.00415 * 13 11 10 15 15 H 1.08006 * 119.99527 * 359.97438 * 14 13 11 16 16 C 1.37868 * 120.00283 * 179.97438 * 14 13 11 17 17 N 1.31521 * 120.00232 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00231 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47108 * 89.99695 * 18 16 14 20 20 H 1.48494 * 109.47448 * 209.99905 * 18 16 14 21 21 H 1.48496 * 109.46872 * 330.00165 * 18 16 14 22 22 C 1.50698 * 109.47112 * 274.99749 * 11 10 8 23 23 C 1.38227 * 120.00071 * 319.72682 * 22 11 10 24 24 C 1.38239 * 120.00124 * 179.81146 * 23 22 11 25 25 C 1.38237 * 119.99737 * 0.41403 * 24 23 22 26 26 C 1.38237 * 119.99989 * 359.81616 * 25 24 23 27 27 C 1.38228 * 119.99901 * 359.97438 * 26 25 24 28 28 C 1.52997 * 109.47164 * 59.99702 * 6 5 4 29 29 C 1.52996 * 109.46969 * 240.00061 * 2 1 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47067 * 300.00027 * 1 2 3 32 32 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 33 33 H 1.09000 * 109.47140 * 59.99774 * 4 2 1 34 34 H 1.09002 * 109.47045 * 299.99867 * 4 2 1 35 35 H 1.08993 * 109.47839 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47160 * 59.99666 * 5 4 2 37 37 H 0.96996 * 119.99844 * 359.97438 * 10 8 6 38 38 H 1.09009 * 109.46952 * 55.00058 * 13 11 10 39 39 H 1.08996 * 109.47558 * 174.99889 * 13 11 10 40 40 H 0.96998 * 120.00429 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99834 * 359.97438 * 23 22 11 42 42 H 1.07997 * 120.00008 * 180.21356 * 24 23 22 43 43 H 1.07994 * 119.99675 * 179.79252 * 25 24 23 44 44 H 1.07995 * 119.99631 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.00003 * 179.97438 * 27 26 25 46 46 H 1.09000 * 109.47140 * 60.00051 * 28 6 5 47 47 H 1.09001 * 109.47230 * 179.97438 * 28 6 5 48 48 H 1.08992 * 109.47534 * 60.00418 * 29 2 1 49 49 H 1.08996 * 109.47134 * 299.99612 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 1 3.7175 -2.4695 0.0001 8 6 5.5875 -1.4407 0.0004 9 8 6.1935 -0.9147 0.9098 10 7 6.2618 -2.0234 -1.0107 11 6 7.7268 -2.0229 -1.0104 12 1 8.0899 -2.1130 0.0134 13 6 8.2374 -3.2038 -1.8383 14 6 7.8390 -4.4949 -1.1710 15 1 7.2780 -4.4751 -0.2482 16 6 8.1905 -5.7013 -1.7383 17 7 7.8432 -6.8281 -1.1556 18 14 9.1601 -5.7356 -3.3346 19 1 10.6137 -5.7376 -3.0308 20 1 8.8124 -6.9604 -4.0988 21 1 8.8251 -4.5359 -4.1430 22 6 8.2288 -0.7347 -1.6099 23 6 7.5982 -0.1947 -2.7150 24 6 8.0563 0.9891 -3.2626 25 6 9.1504 1.6283 -2.7101 26 6 9.7840 1.0858 -1.6078 27 6 9.3232 -0.0956 -1.0577 28 6 3.5705 -0.7204 -1.2489 29 6 2.0400 -0.7212 -1.2492 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -1.7489 1.2492 34 1 1.6767 -0.2074 2.1392 35 1 3.9333 -1.2350 2.1393 36 1 3.9330 0.3070 1.2499 37 1 5.7771 -2.4437 -1.7382 38 1 7.8029 -3.1620 -2.8372 39 1 9.3237 -3.1531 -1.9122 40 1 8.0908 -7.6769 -1.5544 41 1 6.7459 -0.6963 -3.1491 42 1 7.5614 1.4127 -4.1240 43 1 9.5103 2.5513 -3.1400 44 1 10.6390 1.5850 -1.1765 45 1 9.8185 -0.5197 -0.1967 46 1 3.9335 0.3074 -1.2487 47 1 3.9345 -1.2337 -2.1389 48 1 1.6768 -0.2074 -2.1392 49 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567991092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:27 Heat of formation + Delta-G solvation = -68.986411 kcal Electronic energy + Delta-G solvation = -26874.515213 eV Core-core repulsion = 23377.748590 eV Total energy + Delta-G solvation = -3496.766622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39452 -40.09622 -38.81140 -36.82242 -34.71838 -33.84823 -32.43171 -31.72126 -31.54800 -30.97072 -27.95249 -26.52141 -23.64546 -23.55044 -23.45579 -23.11013 -21.46278 -21.01619 -20.56767 -19.07265 -18.17986 -17.66354 -17.10909 -16.45272 -16.23579 -16.05409 -15.60594 -15.21661 -15.16457 -15.07815 -14.79244 -14.63884 -14.26963 -14.19523 -14.09046 -13.78731 -13.60317 -13.40397 -13.11389 -13.08727 -13.00349 -12.58495 -12.42210 -12.30993 -12.00258 -11.93964 -11.87477 -11.74986 -11.73765 -11.55276 -11.43086 -11.23357 -10.90591 -10.80565 -10.57343 -9.98170 -9.76539 -9.54410 -8.28909 -6.33930 0.49033 0.54928 1.36632 1.37769 1.48797 1.75125 2.34833 2.36037 2.95707 3.06885 3.65913 3.73489 3.78928 3.92483 4.01985 4.16841 4.19203 4.19965 4.27067 4.31937 4.40530 4.45276 4.52622 4.57858 4.59102 4.66724 4.72407 4.76000 4.86810 4.95072 5.00964 5.03164 5.07000 5.13369 5.15443 5.17612 5.20377 5.26385 5.27992 5.34564 5.45335 5.46327 5.53895 5.57917 5.63383 5.63739 5.64932 5.87339 6.17119 6.25008 6.69050 6.74503 7.30126 7.38067 8.87435 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.004607 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.800297 B = 6076.517542 C = 7923.306803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.108 4.108 5 C -0.094 4.094 6 C -0.100 4.100 7 H 0.100 0.900 8 C 0.510 3.490 9 O -0.592 6.592 10 N -0.696 5.696 11 C 0.203 3.797 12 H 0.051 0.949 13 C -0.004 4.004 14 C -0.520 4.520 15 H 0.030 0.970 16 C 0.013 3.987 17 N -0.947 5.947 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.242 1.242 22 C -0.098 4.098 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.103 4.103 29 C -0.108 4.108 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.408 0.592 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.110 0.890 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 17.768 -5.495 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.121 4.121 7 H 0.118 0.882 8 C 0.298 3.702 9 O -0.473 6.473 10 N -0.345 5.345 11 C 0.098 3.902 12 H 0.069 0.931 13 C -0.041 4.041 14 C -0.558 4.558 15 H 0.049 0.951 16 C -0.184 4.184 17 N -0.588 5.588 18 Si 0.768 3.232 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.165 1.165 22 C -0.100 4.100 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.152 4.152 28 C -0.140 4.140 29 C -0.145 4.145 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.244 0.756 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.168 0.832 44 H 0.159 0.841 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.810 17.933 -4.875 21.014 hybrid contribution 0.664 -1.195 -0.159 1.376 sum -9.146 16.739 -5.035 19.728 Atomic orbital electron populations 1.21794 0.94039 1.02106 1.02116 1.21157 0.96267 0.99343 0.94345 0.91484 1.21596 0.93000 1.01333 0.98623 1.21267 0.96549 0.99896 0.95453 1.21371 0.88824 1.02709 0.99212 0.88227 1.21315 0.91374 0.76677 0.80800 1.90615 1.71658 1.47501 1.37485 1.45873 1.06455 1.56907 1.25311 1.19532 0.80348 0.91880 0.98463 0.93103 1.19720 0.96712 0.91742 0.95948 1.21188 1.35272 0.90578 1.08796 0.95131 1.25882 0.96561 0.94951 1.01039 1.70062 1.48483 0.98334 1.41873 0.85749 0.79034 0.78627 0.79777 1.19911 1.20963 1.16480 1.20374 0.96553 0.96350 0.96675 1.21088 1.00235 0.96839 0.95472 1.21450 0.97151 0.94890 1.00508 1.21479 0.96056 1.00839 0.96168 1.21370 1.00625 0.95205 0.96954 1.21174 0.97039 0.96718 1.00283 1.21502 0.97333 1.00172 0.95042 1.21589 0.93127 1.01491 0.98281 0.92512 0.92439 0.91931 0.91529 0.91040 0.93498 0.92613 0.75627 0.94394 0.95509 0.92505 0.85658 0.83391 0.83184 0.84056 0.87199 0.92030 0.90631 0.90114 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.09 -1.53 2.72 -10.80 -0.03 -1.56 16 3 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.11 -2.11 5.20 30.59 0.16 -1.95 16 5 C -0.09 -2.50 4.49 30.60 0.14 -2.36 16 6 C -0.10 -2.77 2.53 -11.54 -0.03 -2.80 16 7 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 8 C 0.51 18.98 7.11 87.66 0.62 19.60 16 9 O -0.59 -26.76 15.65 -3.04 -0.05 -26.80 16 10 N -0.70 -25.77 3.93 -446.10 -1.75 -27.52 16 11 C 0.20 8.44 2.11 44.24 0.09 8.53 16 12 H 0.05 2.47 7.44 -2.39 -0.02 2.46 16 13 C 0.00 -0.16 3.56 29.85 0.11 -0.06 16 14 C -0.52 -29.01 9.39 25.60 0.24 -28.76 16 15 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 16 C 0.01 0.74 5.47 84.65 0.46 1.20 16 17 N -0.95 -58.24 13.96 21.44 0.30 -57.94 16 18 Si 0.94 42.88 27.47 68.60 1.88 44.76 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 22 C -0.10 -3.52 4.91 -19.87 -0.10 -3.62 16 23 C -0.12 -3.53 9.32 22.27 0.21 -3.33 16 24 C -0.12 -2.97 10.05 22.27 0.22 -2.74 16 25 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 26 C -0.12 -3.31 10.05 22.27 0.22 -3.08 16 27 C -0.13 -4.52 9.67 22.27 0.22 -4.30 16 28 C -0.10 -2.17 5.10 30.61 0.16 -2.02 16 29 C -0.11 -1.78 5.21 30.61 0.16 -1.62 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.41 13.49 8.02 -92.71 -0.74 12.74 16 38 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 39 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.13 3.41 7.73 -2.91 -0.02 3.39 16 42 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 44 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 45 H 0.11 3.79 8.04 -2.91 -0.02 3.77 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.48 7.56 -2.39 -0.02 1.47 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.45 389.53 4.23 -67.23 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.11 Total: 33.08 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 3.74 Total: -32.80 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.46 Total: -85.46 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Total: -71.45 4.23 -67.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567991092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.760 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds