Wall clock time and date at job start Tue Mar 31 2020 11:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50697 * 120.00094 * 2 1 4 4 C 1.30997 * 119.99756 * 179.97438 * 2 1 3 5 5 C 1.50704 * 120.00049 * 353.43432 * 4 2 1 6 6 C 1.53006 * 109.46987 * 118.02180 * 5 4 2 7 7 C 1.53003 * 109.46508 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.46928 * 55.00756 * 7 6 5 9 9 C 1.52998 * 109.47530 * 295.00034 * 7 6 5 10 10 C 1.53004 * 109.46391 * 174.99914 * 7 6 5 11 11 C 1.50706 * 109.46962 * 185.00459 * 10 7 6 12 12 O 1.21286 * 119.99915 * 359.97438 * 11 10 7 13 13 N 1.34771 * 120.00092 * 180.02562 * 11 10 7 14 14 C 1.39132 * 119.99916 * 184.78126 * 13 11 10 15 15 C 1.38643 * 120.28325 * 331.33118 * 14 13 11 16 16 C 1.38228 * 120.02985 * 180.02562 * 15 14 13 17 17 C 1.38855 * 120.61775 * 0.02562 * 16 15 14 18 18 C 1.36469 * 120.57789 * 0.02562 * 17 16 15 19 19 C 1.40735 * 119.94329 * 359.97438 * 18 17 16 20 20 C 1.41071 * 120.29963 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99447 * 148.01871 * 20 19 18 22 22 C 1.39956 * 120.00133 * 328.01392 * 20 19 18 23 23 N 1.30854 * 120.00053 * 164.79624 * 22 20 19 24 24 Si 1.86800 * 119.99888 * 344.79522 * 22 20 19 25 25 H 1.48501 * 109.47225 * 86.31751 * 24 22 20 26 26 H 1.48503 * 109.46772 * 206.31486 * 24 22 20 27 27 H 1.48500 * 109.47463 * 326.31478 * 24 22 20 28 28 H 1.09003 * 109.47448 * 267.37274 * 1 2 3 29 29 H 1.09002 * 109.46446 * 27.37074 * 1 2 3 30 30 H 1.09002 * 109.47185 * 147.36687 * 1 2 3 31 31 H 1.08999 * 109.47253 * 269.99370 * 3 2 1 32 32 H 1.08999 * 109.47484 * 29.99808 * 3 2 1 33 33 H 1.09006 * 109.47149 * 149.99389 * 3 2 1 34 34 H 1.08002 * 119.99758 * 173.42989 * 4 2 1 35 35 H 1.08991 * 109.47012 * 358.02194 * 5 4 2 36 36 H 1.09003 * 109.46700 * 238.01727 * 5 4 2 37 37 H 1.09000 * 109.46950 * 60.00259 * 6 5 4 38 38 H 1.08996 * 109.47028 * 299.99749 * 6 5 4 39 39 H 1.08992 * 109.46890 * 60.00188 * 9 7 6 40 40 H 1.09000 * 109.47029 * 180.02562 * 9 7 6 41 41 H 1.09004 * 109.46987 * 300.00260 * 9 7 6 42 42 H 1.08992 * 109.47268 * 65.00769 * 10 7 6 43 43 H 1.09002 * 109.47589 * 305.00300 * 10 7 6 44 44 H 0.97002 * 119.99917 * 4.78530 * 13 11 10 45 45 H 1.08002 * 119.98420 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.68804 * 180.28015 * 16 15 14 47 47 H 1.08000 * 119.71328 * 179.97438 * 17 16 15 48 48 H 1.07999 * 120.02779 * 180.02562 * 18 17 16 49 49 H 0.96998 * 120.00424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4158 -2.4353 0.1503 6 6 1.6222 -3.2888 -1.1026 7 6 0.8652 -4.6097 -0.9502 8 1 -0.1828 -4.4046 -0.7318 9 6 1.4762 -5.4185 0.1958 10 6 0.9681 -5.4094 -2.2505 11 6 0.1221 -6.6520 -2.1443 12 8 -0.5013 -6.8762 -1.1284 13 7 0.0592 -7.5148 -3.1778 14 6 -0.7978 -8.6092 -3.1191 15 6 -1.1273 -9.1744 -1.8967 16 6 -1.9788 -10.2620 -1.8445 17 6 -2.5115 -10.7997 -3.0087 18 6 -2.2031 -10.2638 -4.2253 19 6 -1.3386 -9.1562 -4.3063 20 6 -1.0152 -8.5960 -5.5599 21 1 -0.8214 -7.5368 -5.6442 22 6 -0.9454 -9.4126 -6.6944 23 7 -0.9432 -8.8759 -7.8878 24 14 -0.8554 -11.2688 -6.5049 25 1 -2.2291 -11.8229 -6.3998 26 1 -0.1745 -11.8546 -7.6875 27 1 -0.0909 -11.6046 -5.2768 28 1 -0.3634 -0.0471 1.0266 29 1 -0.3632 0.9127 -0.4725 30 1 -0.3633 -0.8654 -0.5542 31 1 2.4423 1.6197 -1.0276 32 1 1.6715 2.0648 0.5138 33 1 3.2130 1.1747 0.5140 34 1 3.2367 -1.1376 -0.1065 35 1 0.3530 -2.2315 0.2802 36 1 1.7921 -2.9717 1.0214 37 1 2.6851 -3.4925 -1.2324 38 1 1.2460 -2.7524 -1.9737 39 1 1.4029 -4.8487 1.1220 40 1 0.9371 -6.3596 0.3041 41 1 2.5243 -5.6235 -0.0227 42 1 2.0069 -5.6907 -2.4227 43 1 0.6144 -4.7990 -3.0815 44 1 0.6114 -7.3726 -3.9625 45 1 -0.7185 -8.7647 -0.9849 46 1 -2.2354 -10.6951 -0.8890 47 1 -3.1750 -11.6499 -2.9510 48 1 -2.6228 -10.6888 -5.1251 49 1 -0.8944 -9.4418 -8.6741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572002170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:48 Heat of formation + Delta-G solvation = -43.636236 kcal Electronic energy + Delta-G solvation = -25552.484677 eV Core-core repulsion = 22056.817321 eV Total energy + Delta-G solvation = -3495.667356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.37837 -39.41119 -38.36267 -36.46996 -35.54853 -35.38063 -32.27219 -32.15336 -30.60771 -28.66396 -28.48599 -27.31892 -26.83142 -24.28268 -23.53503 -22.32629 -21.15181 -20.69212 -19.35842 -18.70796 -18.42391 -17.84625 -16.97199 -16.65954 -16.36635 -15.90340 -15.72401 -15.38995 -15.24728 -14.99541 -14.80315 -14.65134 -14.25804 -14.12334 -13.85649 -13.62339 -13.43912 -13.30793 -13.21232 -12.95492 -12.76392 -12.72425 -12.66239 -12.42108 -12.40471 -12.18272 -11.88667 -11.75096 -11.66017 -11.64668 -11.39476 -11.31198 -11.13216 -10.90412 -10.34054 -9.49033 -9.46120 -8.88204 -8.80527 -6.44462 0.68036 0.82983 1.29591 1.32814 1.38832 1.49961 1.83770 2.13604 2.45701 2.64085 3.50897 3.76640 3.82505 4.00677 4.06915 4.15081 4.31889 4.36013 4.40506 4.46238 4.55822 4.64886 4.68069 4.70894 4.72413 4.77686 4.80519 4.86520 4.88503 4.93897 4.98050 4.98222 5.03016 5.13134 5.16185 5.20631 5.25077 5.31277 5.33125 5.35897 5.54465 5.59977 5.63205 5.73372 5.87434 5.98529 6.01954 6.11852 6.15145 6.40164 6.62558 6.83768 6.89031 7.40800 8.20029 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019705 B = 0.002516 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.634513 B =11128.075497 C =11994.589603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.147 4.147 3 C -0.116 4.116 4 C -0.170 4.170 5 C -0.095 4.095 6 C -0.100 4.100 7 C -0.068 4.068 8 H 0.057 0.943 9 C -0.149 4.149 10 C -0.129 4.129 11 C 0.497 3.503 12 O -0.563 6.563 13 N -0.646 5.646 14 C 0.030 3.970 15 C -0.103 4.103 16 C -0.216 4.216 17 C -0.098 4.098 18 C -0.241 4.241 19 C 0.057 3.943 20 C -0.476 4.476 21 H 0.068 0.932 22 C 0.054 3.946 23 N -0.847 5.847 24 Si 0.961 3.039 25 H -0.259 1.259 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.412 0.588 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.106 0.894 49 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.703 12.653 11.529 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.147 4.147 3 C -0.173 4.173 4 C -0.188 4.188 5 C -0.132 4.132 6 C -0.137 4.137 7 C -0.087 4.087 8 H 0.076 0.924 9 C -0.206 4.206 10 C -0.168 4.168 11 C 0.287 3.713 12 O -0.443 6.443 13 N -0.288 5.288 14 C -0.065 4.065 15 C -0.123 4.123 16 C -0.236 4.236 17 C -0.116 4.116 18 C -0.261 4.261 19 C 0.053 3.947 20 C -0.505 4.505 21 H 0.087 0.913 22 C -0.161 4.161 23 N -0.473 5.473 24 Si 0.786 3.214 25 H -0.184 1.184 26 H -0.207 1.207 27 H -0.184 1.184 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.249 0.751 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.124 0.876 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.315 12.602 11.930 18.832 hybrid contribution 0.013 -0.672 -0.873 1.102 sum 7.328 11.930 11.057 17.840 Atomic orbital electron populations 1.20918 0.92429 1.02503 1.02154 1.21861 0.96154 0.95703 1.00958 1.20837 0.99681 0.94484 1.02301 1.22722 0.99758 0.93730 1.02580 1.20811 1.00244 0.93847 0.98279 1.21505 1.00724 0.93516 0.97990 1.20831 1.00059 0.94676 0.93179 0.92433 1.21928 1.00356 1.00209 0.98126 1.21808 1.00974 0.92809 1.01231 1.21520 0.82326 0.85079 0.82394 1.90544 1.46727 1.76524 1.30487 1.43139 1.40857 1.24025 1.20777 1.17990 1.00093 0.94352 0.94057 1.21237 0.99107 0.95443 0.96552 1.20810 1.04643 1.00189 0.97936 1.20732 0.99248 0.99318 0.92341 1.20955 1.04679 1.02653 0.97782 1.17731 0.91343 0.93304 0.92355 1.19166 1.43993 0.96572 0.90812 0.91345 1.26654 0.90654 1.04816 0.93973 1.69695 1.37450 1.40489 0.99699 0.85610 0.79619 0.78072 0.78101 1.18440 1.20655 1.18437 0.91428 0.91423 0.91942 0.91351 0.91312 0.91591 0.86932 0.91545 0.90715 0.90756 0.91845 0.91927 0.93574 0.92226 0.86740 0.87682 0.75088 0.85470 0.85706 0.85613 0.87636 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.02 71.24 0.64 -1.24 16 2 C -0.15 -2.32 6.05 -16.48 -0.10 -2.42 16 3 C -0.12 -1.44 10.01 71.23 0.71 -0.72 16 4 C -0.17 -2.76 9.10 25.65 0.23 -2.53 16 5 C -0.09 -1.64 5.07 29.85 0.15 -1.48 16 6 C -0.10 -1.78 4.67 30.60 0.14 -1.63 16 7 C -0.07 -1.57 2.04 -10.79 -0.02 -1.59 16 8 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 9 C -0.15 -3.51 8.69 71.98 0.63 -2.88 16 10 C -0.13 -3.17 5.18 29.85 0.15 -3.02 16 11 C 0.50 17.62 7.42 87.66 0.65 18.27 16 12 O -0.56 -23.05 11.02 -3.05 -0.03 -23.09 16 13 N -0.65 -25.61 5.04 -302.28 -1.52 -27.13 16 14 C 0.03 1.41 6.44 38.87 0.25 1.66 16 15 C -0.10 -4.63 8.75 22.36 0.20 -4.43 16 16 C -0.22 -9.01 10.04 22.42 0.22 -8.79 16 17 C -0.10 -4.13 9.97 22.00 0.22 -3.91 16 18 C -0.24 -11.43 7.23 22.47 0.16 -11.27 16 19 C 0.06 2.84 5.09 -21.18 -0.11 2.73 16 20 C -0.48 -24.95 8.79 23.38 0.21 -24.75 16 21 H 0.07 3.75 7.62 -2.91 -0.02 3.73 16 22 C 0.05 2.76 5.43 85.25 0.46 3.22 16 23 N -0.85 -44.28 13.93 21.83 0.30 -43.98 16 24 Si 0.96 41.78 24.61 68.60 1.69 43.47 16 25 H -0.26 -10.80 6.31 99.48 0.63 -10.18 16 26 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.26 -11.68 7.10 99.48 0.71 -10.97 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.91 8.11 -2.39 -0.02 0.89 16 30 H 0.06 1.04 6.49 -2.39 -0.02 1.02 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 33 H 0.07 0.74 8.07 -2.38 -0.02 0.72 16 34 H 0.11 1.65 8.05 -2.91 -0.02 1.63 16 35 H 0.07 1.22 5.61 -2.39 -0.01 1.20 16 36 H 0.07 1.27 6.56 -2.39 -0.02 1.25 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.30 6.56 -2.39 -0.02 1.29 16 40 H 0.05 1.38 5.95 -2.39 -0.01 1.37 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.41 15.16 7.81 -92.71 -0.72 14.44 16 45 H 0.13 5.65 5.72 -2.91 -0.02 5.64 16 46 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 47 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 48 H 0.11 4.96 4.55 -2.91 -0.01 4.95 16 49 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 Total: -1.00 -60.65 382.67 5.38 -55.27 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: 0.14 Total: 40.23 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 4.81 Total: -44.78 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.22 Total: -71.11 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.03 Total: -23.09 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.69 Total: 43.47 kcal Total: -60.65 5.38 -55.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572002170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.635 kcal (2) G-P(sol) polarization free energy of solvation -60.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds