Wall clock time and date at job start Tue Mar 31 2020 11:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47223 * 120.00046 * 2 1 3 5 5 C 1.53002 * 109.47250 * 294.99946 * 4 2 1 6 6 C 1.53006 * 109.47226 * 174.99779 * 5 4 2 7 7 C 1.52990 * 109.46791 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47362 * 299.99966 * 7 6 5 9 9 C 1.52996 * 109.47075 * 60.00632 * 8 7 6 10 10 C 1.52998 * 109.47219 * 294.99925 * 5 4 2 11 11 C 1.50696 * 109.47173 * 240.00135 * 2 1 3 12 12 O 1.21287 * 119.99944 * 239.99945 * 11 2 1 13 13 N 1.34772 * 120.00238 * 59.99900 * 11 2 1 14 14 C 1.39130 * 120.00556 * 175.27834 * 13 11 2 15 15 C 1.38643 * 120.27845 * 34.21570 * 14 13 11 16 16 C 1.38228 * 120.03075 * 179.97438 * 15 14 13 17 17 C 1.38871 * 120.61383 * 0.04983 * 16 15 14 18 18 C 1.36461 * 120.57891 * 359.97438 * 17 16 15 19 19 C 1.40736 * 119.94273 * 359.66136 * 18 17 16 20 20 C 1.41073 * 120.30426 * 180.34645 * 19 18 17 21 21 H 1.08001 * 120.00056 * 148.82490 * 20 19 18 22 22 C 1.39960 * 119.99584 * 328.82281 * 20 19 18 23 23 N 1.30849 * 119.99917 * 167.55496 * 22 20 19 24 24 Si 1.86801 * 119.99922 * 347.54749 * 22 20 19 25 25 H 1.48505 * 109.46821 * 92.50690 * 24 22 20 26 26 H 1.48501 * 109.46786 * 212.50441 * 24 22 20 27 27 H 1.48496 * 109.47227 * 332.50373 * 24 22 20 28 28 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46865 * 299.99525 * 1 2 3 30 30 H 1.08995 * 109.46900 * 59.99755 * 1 2 3 31 31 H 1.08999 * 109.47249 * 174.99782 * 4 2 1 32 32 H 1.09007 * 109.47218 * 55.00359 * 4 2 1 33 33 H 1.08998 * 109.46691 * 55.00232 * 5 4 2 34 34 H 1.09003 * 109.46725 * 60.00164 * 6 5 4 35 35 H 1.09000 * 109.46914 * 300.00237 * 6 5 4 36 36 H 1.09001 * 109.46931 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47427 * 60.00502 * 7 6 5 38 38 H 1.09009 * 109.47268 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47540 * 300.00232 * 8 7 6 40 40 H 1.08998 * 109.47737 * 59.99671 * 9 8 7 41 41 H 1.09004 * 109.47323 * 180.02562 * 9 8 7 42 42 H 1.09003 * 109.47287 * 300.00176 * 10 5 4 43 43 H 1.09001 * 109.46968 * 59.99735 * 10 5 4 44 44 H 0.97004 * 119.99638 * 355.27576 * 13 11 2 45 45 H 1.07995 * 119.98554 * 0.02562 * 15 14 13 46 46 H 1.08000 * 119.69387 * 180.02562 * 16 15 14 47 47 H 1.07997 * 119.70905 * 179.97438 * 17 16 15 48 48 H 1.07995 * 120.03250 * 180.02562 * 18 17 16 49 49 H 0.96995 * 119.99899 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 6 2.0354 -0.7137 3.7478 7 6 1.6301 0.0762 4.9937 8 6 2.3393 1.4319 4.9912 9 6 1.9391 2.2145 3.7389 10 6 2.3449 1.4244 2.4925 11 6 2.0324 -0.7104 -1.2304 12 8 2.7297 -1.6965 -1.1192 13 7 1.7068 -0.2499 -2.4545 14 6 2.2494 -0.8454 -3.5889 15 6 2.5024 -2.2084 -3.6097 16 6 3.0410 -2.7948 -4.7396 17 6 3.3349 -2.0306 -5.8613 18 6 3.0964 -0.6870 -5.8678 19 6 2.5414 -0.0665 -4.7331 20 6 2.2850 1.3207 -4.7342 21 1 1.4615 1.7181 -4.1595 22 6 3.0979 2.1819 -5.4801 23 7 2.7270 3.4204 -5.6819 24 14 4.7124 1.5633 -6.1873 25 1 4.4894 1.0658 -7.5687 26 1 5.6986 2.6733 -6.2141 27 1 5.2327 0.4592 -5.3415 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1264 -0.7995 1.2056 32 1 1.6055 -1.7199 1.2951 33 1 0.5564 0.2236 2.4929 34 1 3.1144 -0.8684 3.7502 35 1 1.5299 -1.6793 3.7497 36 1 1.9156 -0.4811 5.8860 37 1 0.5511 0.2305 4.9911 38 1 2.0508 1.9945 5.8792 39 1 3.4183 1.2776 4.9939 40 1 0.8601 2.3688 3.7362 41 1 2.4446 3.1802 3.7369 42 1 3.4239 1.2696 2.4950 43 1 2.0599 1.9818 1.6003 44 1 1.0941 0.4967 -2.5447 45 1 2.2777 -2.8124 -2.7431 46 1 3.2355 -3.8571 -4.7501 47 1 3.7558 -2.5038 -6.7361 48 1 3.3280 -0.1013 -6.7451 49 1 3.2902 4.0171 -6.1992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583226499.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:42 Heat of formation + Delta-G solvation = -58.112360 kcal Electronic energy + Delta-G solvation = -26543.461940 eV Core-core repulsion = 23047.166852 eV Total energy + Delta-G solvation = -3496.295088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -40.01158 -38.84555 -37.48182 -34.70100 -33.89092 -33.60815 -31.05044 -30.70620 -30.44098 -28.49090 -26.28924 -25.19317 -23.83273 -22.73979 -22.03437 -21.05909 -20.18308 -19.70299 -19.02520 -17.45807 -17.04334 -16.47365 -15.44955 -15.24902 -15.17591 -14.51077 -14.31476 -14.15596 -14.00875 -13.79070 -13.62561 -13.28959 -13.12764 -12.87308 -12.47561 -12.31355 -12.25116 -12.08537 -11.87822 -11.82534 -11.65532 -11.25835 -11.22787 -11.07711 -10.95609 -10.87911 -10.74472 -10.43292 -10.38756 -10.11586 -10.00646 -9.97427 -9.83578 -9.36989 -9.25977 -8.77820 -7.63916 -7.11959 -6.97124 -4.50517 2.43056 2.66094 3.08880 3.16357 3.31959 3.35976 3.86869 3.96838 4.52418 4.55494 4.57217 4.65041 4.93004 4.99786 5.08376 5.17597 5.23625 5.32808 5.33877 5.40807 5.42756 5.44762 5.52807 5.63383 5.71394 5.85733 5.88099 5.91106 5.96849 6.03447 6.04089 6.06991 6.10448 6.15724 6.17168 6.20169 6.27960 6.36497 6.41987 6.51828 6.64029 6.74655 7.00508 7.16308 7.38559 7.50047 7.71315 7.81386 7.97855 8.24424 8.28665 8.59260 8.71819 8.95321 10.05038 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.003312 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.601017 B = 8452.340926 C = 9428.014197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.093 4.093 5 C -0.088 4.088 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.119 4.119 11 C 0.505 3.495 12 O -0.542 6.542 13 N -0.640 5.640 14 C 0.033 3.967 15 C -0.078 4.078 16 C -0.227 4.227 17 C -0.088 4.088 18 C -0.226 4.226 19 C 0.083 3.917 20 C -0.450 4.450 21 H 0.088 0.912 22 C 0.085 3.915 23 N -0.814 5.814 24 Si 0.912 3.088 25 H -0.271 1.271 26 H -0.293 1.293 27 H -0.243 1.243 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.404 0.596 45 H 0.116 0.884 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -1.863 15.800 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 H 0.116 0.884 4 C -0.131 4.131 5 C -0.106 4.106 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.157 4.157 11 C 0.292 3.708 12 O -0.420 6.420 13 N -0.282 5.282 14 C -0.061 4.061 15 C -0.099 4.099 16 C -0.247 4.247 17 C -0.107 4.107 18 C -0.246 4.246 19 C 0.079 3.921 20 C -0.479 4.479 21 H 0.106 0.894 22 C -0.133 4.133 23 N -0.439 5.439 24 Si 0.740 3.260 25 H -0.197 1.197 26 H -0.221 1.221 27 H -0.167 1.167 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.239 0.761 45 H 0.134 0.866 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.121 0.879 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.807 -2.243 15.836 16.239 hybrid contribution 0.458 0.410 -0.603 0.861 sum -2.349 -1.833 15.233 15.522 Atomic orbital electron populations 1.21830 0.93384 1.02555 1.02502 1.21344 0.97286 1.01193 0.93403 0.88404 1.21413 1.01852 0.98482 0.91303 1.21237 1.00326 0.94886 0.94160 1.21572 1.01397 0.98274 0.93936 1.21526 1.00259 0.96033 0.97790 1.21540 1.00425 0.96089 0.97689 1.21541 1.01073 0.98338 0.94722 1.21684 1.00560 0.95697 0.97713 1.20597 0.80537 0.85081 0.84554 1.90627 1.38557 1.26161 1.86623 1.42926 1.45737 1.35184 1.04324 1.17624 1.09813 0.91674 0.86944 1.20807 0.98791 0.92847 0.97413 1.20344 1.11248 0.98143 0.94926 1.20374 0.99190 0.94183 0.96954 1.20630 1.11351 0.94544 0.98096 1.17565 0.91133 0.93388 0.90000 1.19174 1.13546 0.89802 1.25365 0.89434 1.26057 0.99897 0.94467 0.92872 1.69646 1.37094 1.06205 1.30980 0.86311 0.80761 0.78730 0.80208 1.19696 1.22121 1.16661 0.92208 0.91474 0.92081 0.91114 0.91416 0.90924 0.91966 0.92069 0.92366 0.92165 0.92461 0.92122 0.92134 0.92222 0.91912 0.91565 0.76052 0.86611 0.88583 0.88825 0.87930 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.85 37.16 0.33 -1.31 16 2 C -0.11 -1.50 2.60 -91.77 -0.24 -1.74 16 3 H 0.10 1.27 6.34 -51.93 -0.33 0.94 16 4 C -0.09 -1.16 3.50 -26.73 -0.09 -1.25 16 5 C -0.09 -0.87 2.05 -90.62 -0.19 -1.06 16 6 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 7 C -0.12 -0.96 5.92 -26.74 -0.16 -1.12 16 8 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 9 C -0.12 -1.03 5.92 -26.71 -0.16 -1.19 16 10 C -0.12 -1.18 4.97 -26.71 -0.13 -1.31 16 11 C 0.51 9.38 7.00 -10.99 -0.08 9.30 16 12 O -0.54 -11.76 13.30 5.55 0.07 -11.68 16 13 N -0.64 -12.77 4.95 -9.48 -0.05 -12.82 16 14 C 0.03 0.78 6.35 -83.17 -0.53 0.25 16 15 C -0.08 -1.80 8.69 -39.44 -0.34 -2.14 16 16 C -0.23 -4.98 10.04 -39.35 -0.39 -5.37 16 17 C -0.09 -1.96 9.97 -39.99 -0.40 -2.36 16 18 C -0.23 -5.47 6.95 -39.28 -0.27 -5.74 16 19 C 0.08 2.08 5.14 -106.65 -0.55 1.53 16 20 C -0.45 -11.55 9.13 -37.86 -0.35 -11.90 16 21 H 0.09 2.25 7.08 -52.49 -0.37 1.88 16 22 C 0.09 2.18 5.47 -17.33 -0.09 2.08 16 23 N -0.81 -21.10 13.93 55.55 0.77 -20.33 16 24 Si 0.91 20.93 24.40 -169.99 -4.15 16.78 16 25 H -0.27 -6.00 6.66 56.52 0.38 -5.62 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.24 -5.86 6.69 56.52 0.38 -5.48 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.62 6.46 -51.93 -0.34 0.29 16 30 H 0.06 0.68 7.46 -51.93 -0.39 0.30 16 31 H 0.07 1.01 7.95 -51.93 -0.41 0.59 16 32 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.07 0.68 6.34 -51.93 -0.33 0.36 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.68 6.46 -51.93 -0.34 0.34 16 44 H 0.40 7.33 6.87 -40.82 -0.28 7.05 16 45 H 0.12 2.63 6.15 -52.49 -0.32 2.30 16 46 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 47 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 48 H 0.10 2.45 4.41 -52.49 -0.23 2.22 16 49 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -28.53 370.24 -9.72 -38.25 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.02 Total: 9.86 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -3.94 Total: -25.64 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.73 Total: -33.15 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.15 Total: 16.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.53 -9.72 -38.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583226499.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.857 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds