Wall clock time and date at job start Tue Mar 31 2020 11:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46478 * 2 1 4 4 C 1.52992 * 109.47076 * 239.99620 * 2 1 3 5 5 C 1.52997 * 109.47170 * 64.99821 * 4 2 1 6 6 C 1.53005 * 109.47016 * 64.99885 * 5 4 2 7 7 C 1.53003 * 109.46968 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46952 * 299.99848 * 7 6 5 9 9 C 1.52995 * 109.47119 * 60.00219 * 8 7 6 10 10 C 1.52998 * 109.47472 * 185.00114 * 5 4 2 11 11 C 1.50702 * 109.47181 * 119.99671 * 2 1 3 12 12 O 1.21273 * 119.99930 * 119.99971 * 11 2 1 13 13 N 1.34780 * 119.99967 * 300.00413 * 11 2 1 14 14 C 1.39126 * 119.99938 * 174.60370 * 13 11 2 15 15 C 1.38648 * 120.28389 * 340.12373 * 14 13 11 16 16 C 1.38222 * 120.03357 * 179.97438 * 15 14 13 17 17 C 1.38862 * 120.61449 * 0.02562 * 16 15 14 18 18 C 1.36462 * 120.58158 * 0.02562 * 17 16 15 19 19 C 1.40740 * 119.94013 * 359.66271 * 18 17 16 20 20 C 1.41073 * 120.30120 * 180.33679 * 19 18 17 21 21 H 1.08003 * 119.99585 * 151.37090 * 20 19 18 22 22 C 1.39954 * 119.99928 * 331.37161 * 20 19 18 23 23 N 1.30856 * 119.99908 * 167.29442 * 22 20 19 24 24 Si 1.86797 * 120.00131 * 347.29722 * 22 20 19 25 25 H 1.48496 * 109.47461 * 95.37903 * 24 22 20 26 26 H 1.48505 * 109.46785 * 215.38040 * 24 22 20 27 27 H 1.48503 * 109.46906 * 335.37507 * 24 22 20 28 28 H 1.08999 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47029 * 300.00179 * 1 2 3 30 30 H 1.08993 * 109.47111 * 60.00483 * 1 2 3 31 31 H 1.08999 * 109.47179 * 305.00128 * 4 2 1 32 32 H 1.09001 * 109.47185 * 184.99796 * 4 2 1 33 33 H 1.09000 * 109.47182 * 305.00108 * 5 4 2 34 34 H 1.09000 * 109.46963 * 60.00089 * 6 5 4 35 35 H 1.08996 * 109.47084 * 300.00064 * 6 5 4 36 36 H 1.09005 * 109.46846 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47469 * 60.00077 * 7 6 5 38 38 H 1.09000 * 109.46809 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.46909 * 299.99985 * 8 7 6 40 40 H 1.09000 * 109.46943 * 59.99991 * 9 8 7 41 41 H 1.09004 * 109.46809 * 179.97438 * 9 8 7 42 42 H 1.08994 * 109.47714 * 59.99736 * 10 5 4 43 43 H 1.09004 * 109.46601 * 299.99763 * 10 5 4 44 44 H 0.96994 * 119.99696 * 354.59588 * 13 11 2 45 45 H 1.08006 * 119.98088 * 0.02562 * 15 14 13 46 46 H 1.07996 * 119.68935 * 180.02562 * 16 15 14 47 47 H 1.07999 * 119.71111 * 180.02562 * 17 16 15 48 48 H 1.07997 * 120.03250 * 179.97438 * 18 17 16 49 49 H 0.96997 * 119.99946 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6352 0.0688 -2.4952 6 6 2.3449 1.4243 -2.4925 7 6 1.9395 2.2146 -3.7383 8 6 2.3392 1.4323 -4.9910 9 6 1.6297 0.0768 -4.9937 10 6 2.0353 -0.7138 -3.7476 11 6 2.0324 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7068 -0.2498 2.4546 14 6 2.0752 -0.9671 3.5884 15 6 2.3957 -2.3125 3.4910 16 6 2.7616 -3.0200 4.6207 17 6 2.8121 -2.3962 5.8603 18 6 2.5007 -1.0734 5.9851 19 6 2.1314 -0.3286 4.8495 20 6 1.8148 1.0410 4.9686 21 1 1.9816 1.7081 4.1358 22 6 1.2847 1.5351 6.1659 23 7 1.2227 2.8261 6.3704 24 14 0.6658 0.3517 7.4720 25 1 1.7391 0.1097 8.4693 26 1 -0.5175 0.9386 8.1508 27 1 0.2836 -0.9337 6.8342 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6054 -1.7198 -1.2950 32 1 3.1264 -0.7995 -1.2055 33 1 0.5563 0.2235 -2.4928 34 1 3.4238 1.2696 -2.4950 35 1 2.0598 1.9818 -1.6003 36 1 2.4454 3.1802 -3.7366 37 1 0.8606 2.3694 -3.7354 38 1 2.0509 1.9955 -5.8785 39 1 3.4183 1.2776 -4.9938 40 1 0.5507 0.2315 -4.9908 41 1 1.9141 -0.4804 -5.8864 42 1 1.5299 -1.6795 -3.7496 43 1 3.1143 -0.8684 -3.7501 44 1 1.2156 0.5816 2.5451 45 1 2.3603 -2.8078 2.5319 46 1 3.0106 -4.0676 4.5384 47 1 3.1003 -2.9629 6.7333 48 1 2.5425 -0.5973 6.9535 49 1 0.8549 3.1686 7.2001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583226503.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:54 Heat of formation + Delta-G solvation = -54.222112 kcal Electronic energy + Delta-G solvation = -26463.857368 eV Core-core repulsion = 22967.730974 eV Total energy + Delta-G solvation = -3496.126394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.08319 -38.87965 -37.47722 -34.73710 -33.92685 -33.62220 -31.06818 -30.72266 -30.44525 -28.49519 -26.29876 -25.19900 -23.84350 -22.76147 -22.10344 -21.07721 -20.18333 -19.71760 -19.05612 -17.49291 -16.96834 -16.52064 -15.47501 -15.32684 -15.19113 -14.58128 -14.31286 -14.17113 -14.02053 -13.78121 -13.59622 -13.23332 -13.08426 -12.95333 -12.44978 -12.34923 -12.27908 -12.10396 -11.87457 -11.81519 -11.66909 -11.26817 -11.24918 -11.08681 -10.97079 -10.87305 -10.74515 -10.71107 -10.41163 -10.13270 -10.00086 -9.91355 -9.77571 -9.46075 -9.29480 -8.69480 -7.64177 -7.03377 -6.98462 -4.51816 2.40733 2.67716 3.07774 3.14273 3.29105 3.39782 3.83240 3.94050 4.50758 4.53347 4.55193 4.63127 4.91149 4.98223 5.07051 5.15519 5.22728 5.31301 5.38802 5.39534 5.41244 5.42873 5.51137 5.59969 5.70118 5.85141 5.86607 5.90000 5.95242 6.01836 6.02332 6.07324 6.08725 6.15918 6.16740 6.19913 6.26555 6.37642 6.39992 6.49667 6.64668 6.73377 7.00350 7.17722 7.34469 7.51254 7.70168 7.83803 8.00242 8.24748 8.31761 8.59930 8.70677 8.91967 10.02573 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003066 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.873071 B = 9129.709691 C =10106.497468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.092 4.092 5 C -0.088 4.088 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.501 3.499 12 O -0.539 6.539 13 N -0.637 5.637 14 C 0.036 3.964 15 C -0.095 4.095 16 C -0.224 4.224 17 C -0.093 4.093 18 C -0.222 4.222 19 C 0.078 3.922 20 C -0.452 4.452 21 H 0.089 0.911 22 C 0.084 3.916 23 N -0.812 5.812 24 Si 0.913 3.087 25 H -0.272 1.272 26 H -0.294 1.294 27 H -0.240 1.240 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.408 0.592 45 H 0.131 0.869 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -1.183 -16.609 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 H 0.114 0.886 4 C -0.130 4.130 5 C -0.107 4.107 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.152 4.152 11 C 0.288 3.712 12 O -0.418 6.418 13 N -0.278 5.278 14 C -0.059 4.059 15 C -0.116 4.116 16 C -0.244 4.244 17 C -0.112 4.112 18 C -0.241 4.241 19 C 0.073 3.927 20 C -0.481 4.481 21 H 0.107 0.893 22 C -0.134 4.134 23 N -0.437 5.437 24 Si 0.741 3.259 25 H -0.199 1.199 26 H -0.222 1.222 27 H -0.163 1.163 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.244 0.756 45 H 0.149 0.851 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.149 -1.587 -16.610 16.824 hybrid contribution -0.398 0.222 0.933 1.038 sum -2.548 -1.365 -15.678 15.942 Atomic orbital electron populations 1.21831 0.93221 1.02673 1.02559 1.21335 0.97399 1.01054 0.93400 0.88605 1.21409 1.01801 0.98547 0.91281 1.21240 1.00373 0.94863 0.94174 1.21673 1.00530 0.95715 0.97703 1.21536 1.01103 0.98320 0.94732 1.21539 1.00414 0.96097 0.97686 1.21536 1.00276 0.96022 0.97798 1.21578 1.01383 0.98290 0.93915 1.20618 0.80587 0.85389 0.84580 1.90555 1.37816 1.26894 1.86548 1.43034 1.54554 1.25826 1.04365 1.17717 1.10883 0.90817 0.86463 1.21159 0.99042 0.92410 0.98940 1.20360 1.12668 0.98603 0.92744 1.20351 0.99815 0.94719 0.96339 1.20487 1.10926 0.95150 0.97563 1.17484 0.91959 0.93154 0.90074 1.19238 1.36853 0.92135 0.99887 0.89326 1.26125 0.93085 0.95671 0.98561 1.69657 1.34079 1.13964 1.25984 0.86292 0.77859 0.81924 0.79807 1.19869 1.22247 1.16293 0.92180 0.91911 0.91502 0.91364 0.91124 0.90890 0.91928 0.91615 0.92230 0.92120 0.92453 0.92124 0.92156 0.92352 0.92044 0.91969 0.75613 0.85117 0.88631 0.88917 0.88279 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.86 37.16 0.33 -1.34 16 2 C -0.11 -1.46 2.59 -91.77 -0.24 -1.70 16 3 H 0.10 1.17 6.34 -51.93 -0.33 0.84 16 4 C -0.09 -1.13 3.50 -26.74 -0.09 -1.22 16 5 C -0.09 -0.85 2.05 -90.62 -0.19 -1.04 16 6 C -0.12 -1.12 4.96 -26.73 -0.13 -1.25 16 7 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 8 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 9 C -0.12 -0.93 5.92 -26.71 -0.16 -1.09 16 10 C -0.11 -1.02 5.21 -26.71 -0.14 -1.16 16 11 C 0.50 9.13 7.00 -10.98 -0.08 9.06 16 12 O -0.54 -11.44 12.82 5.56 0.07 -11.37 16 13 N -0.64 -12.70 5.02 -9.47 -0.05 -12.75 16 14 C 0.04 0.84 6.53 -83.17 -0.54 0.29 16 15 C -0.10 -2.21 8.78 -39.44 -0.35 -2.55 16 16 C -0.22 -4.95 10.04 -39.36 -0.40 -5.35 16 17 C -0.09 -2.09 9.96 -39.99 -0.40 -2.49 16 18 C -0.22 -5.37 6.84 -39.28 -0.27 -5.64 16 19 C 0.08 1.94 5.21 -106.65 -0.56 1.38 16 20 C -0.45 -11.58 8.89 -37.86 -0.34 -11.92 16 21 H 0.09 2.31 7.33 -52.48 -0.38 1.93 16 22 C 0.08 2.12 5.47 -17.32 -0.09 2.03 16 23 N -0.81 -20.88 13.93 55.55 0.77 -20.11 16 24 Si 0.91 20.44 24.36 -169.99 -4.14 16.30 16 25 H -0.27 -5.98 6.78 56.52 0.38 -5.60 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.24 -5.51 6.43 56.52 0.36 -5.14 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 30 H 0.07 0.62 6.46 -51.93 -0.34 0.29 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.97 7.95 -51.93 -0.41 0.55 16 33 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.63 6.46 -51.93 -0.34 0.30 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.41 7.55 7.01 -40.82 -0.29 7.26 16 45 H 0.13 3.00 5.43 -52.48 -0.28 2.72 16 46 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 47 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 48 H 0.10 2.37 4.16 -52.49 -0.22 2.15 16 49 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -28.24 369.27 -9.73 -37.97 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.00 Total: 10.62 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.95 Total: -26.23 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.73 Total: -32.86 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.14 Total: 16.30 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.24 -9.73 -37.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583226503.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.254 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds