Wall clock time and date at job start Tue Mar 31 2020 11:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46478 * 2 1 4 4 C 1.52992 * 109.47076 * 239.99620 * 2 1 3 5 5 C 1.52997 * 109.47170 * 64.99821 * 4 2 1 6 6 C 1.53005 * 109.47016 * 64.99885 * 5 4 2 7 7 C 1.53003 * 109.46968 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46952 * 299.99848 * 7 6 5 9 9 C 1.52995 * 109.47119 * 60.00219 * 8 7 6 10 10 C 1.52998 * 109.47472 * 185.00114 * 5 4 2 11 11 C 1.50702 * 109.47181 * 119.99671 * 2 1 3 12 12 O 1.21273 * 119.99930 * 119.99971 * 11 2 1 13 13 N 1.34780 * 119.99967 * 300.00413 * 11 2 1 14 14 C 1.39126 * 119.99938 * 174.60370 * 13 11 2 15 15 C 1.38648 * 120.28389 * 340.12373 * 14 13 11 16 16 C 1.38222 * 120.03357 * 179.97438 * 15 14 13 17 17 C 1.38862 * 120.61449 * 0.02562 * 16 15 14 18 18 C 1.36462 * 120.58158 * 0.02562 * 17 16 15 19 19 C 1.40740 * 119.94013 * 359.66271 * 18 17 16 20 20 C 1.41073 * 120.30120 * 180.33679 * 19 18 17 21 21 H 1.08003 * 119.99585 * 151.37090 * 20 19 18 22 22 C 1.39954 * 119.99928 * 331.37161 * 20 19 18 23 23 N 1.30856 * 119.99908 * 167.29442 * 22 20 19 24 24 Si 1.86797 * 120.00131 * 347.29722 * 22 20 19 25 25 H 1.48496 * 109.47461 * 95.37903 * 24 22 20 26 26 H 1.48505 * 109.46785 * 215.38040 * 24 22 20 27 27 H 1.48503 * 109.46906 * 335.37507 * 24 22 20 28 28 H 1.08999 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47029 * 300.00179 * 1 2 3 30 30 H 1.08993 * 109.47111 * 60.00483 * 1 2 3 31 31 H 1.08999 * 109.47179 * 305.00128 * 4 2 1 32 32 H 1.09001 * 109.47185 * 184.99796 * 4 2 1 33 33 H 1.09000 * 109.47182 * 305.00108 * 5 4 2 34 34 H 1.09000 * 109.46963 * 60.00089 * 6 5 4 35 35 H 1.08996 * 109.47084 * 300.00064 * 6 5 4 36 36 H 1.09005 * 109.46846 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47469 * 60.00077 * 7 6 5 38 38 H 1.09000 * 109.46809 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.46909 * 299.99985 * 8 7 6 40 40 H 1.09000 * 109.46943 * 59.99991 * 9 8 7 41 41 H 1.09004 * 109.46809 * 179.97438 * 9 8 7 42 42 H 1.08994 * 109.47714 * 59.99736 * 10 5 4 43 43 H 1.09004 * 109.46601 * 299.99763 * 10 5 4 44 44 H 0.96994 * 119.99696 * 354.59588 * 13 11 2 45 45 H 1.08006 * 119.98088 * 0.02562 * 15 14 13 46 46 H 1.07996 * 119.68935 * 180.02562 * 16 15 14 47 47 H 1.07999 * 119.71111 * 180.02562 * 17 16 15 48 48 H 1.07997 * 120.03250 * 179.97438 * 18 17 16 49 49 H 0.96997 * 119.99946 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6352 0.0688 -2.4952 6 6 2.3449 1.4243 -2.4925 7 6 1.9395 2.2146 -3.7383 8 6 2.3392 1.4323 -4.9910 9 6 1.6297 0.0768 -4.9937 10 6 2.0353 -0.7138 -3.7476 11 6 2.0324 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7068 -0.2498 2.4546 14 6 2.0752 -0.9671 3.5884 15 6 2.3957 -2.3125 3.4910 16 6 2.7616 -3.0200 4.6207 17 6 2.8121 -2.3962 5.8603 18 6 2.5007 -1.0734 5.9851 19 6 2.1314 -0.3286 4.8495 20 6 1.8148 1.0410 4.9686 21 1 1.9816 1.7081 4.1358 22 6 1.2847 1.5351 6.1659 23 7 1.2227 2.8261 6.3704 24 14 0.6658 0.3517 7.4720 25 1 1.7391 0.1097 8.4693 26 1 -0.5175 0.9386 8.1508 27 1 0.2836 -0.9337 6.8342 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6054 -1.7198 -1.2950 32 1 3.1264 -0.7995 -1.2055 33 1 0.5563 0.2235 -2.4928 34 1 3.4238 1.2696 -2.4950 35 1 2.0598 1.9818 -1.6003 36 1 2.4454 3.1802 -3.7366 37 1 0.8606 2.3694 -3.7354 38 1 2.0509 1.9955 -5.8785 39 1 3.4183 1.2776 -4.9938 40 1 0.5507 0.2315 -4.9908 41 1 1.9141 -0.4804 -5.8864 42 1 1.5299 -1.6795 -3.7496 43 1 3.1143 -0.8684 -3.7501 44 1 1.2156 0.5816 2.5451 45 1 2.3603 -2.8078 2.5319 46 1 3.0106 -4.0676 4.5384 47 1 3.1003 -2.9629 6.7333 48 1 2.5425 -0.5973 6.9535 49 1 0.8549 3.1686 7.2001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583226503.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:48 Heat of formation + Delta-G solvation = -67.422968 kcal Electronic energy + Delta-G solvation = -26464.429800 eV Core-core repulsion = 22967.730974 eV Total energy + Delta-G solvation = -3496.698826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.56398 -39.89480 -39.04941 -35.81796 -35.57435 -35.46914 -32.31501 -31.92316 -31.49932 -30.13601 -27.22064 -27.02238 -25.08526 -23.80278 -23.40464 -22.41501 -21.53517 -20.65476 -20.28192 -19.36914 -18.57828 -17.98796 -17.04350 -16.56304 -16.26481 -15.89975 -15.60218 -15.42729 -15.19101 -14.96596 -14.87123 -14.65149 -14.27415 -14.21592 -14.03805 -13.84078 -13.49933 -13.20843 -13.03952 -12.88215 -12.80776 -12.71062 -12.60656 -12.46261 -12.12196 -11.94502 -11.90242 -11.74797 -11.59684 -11.57517 -11.22815 -11.18415 -11.06370 -10.87584 -10.74489 -10.31093 -9.50588 -8.89010 -8.79421 -6.44804 0.65494 0.82442 1.28305 1.38868 1.50385 1.81833 2.12942 2.37782 2.63463 3.52024 3.65632 3.70180 3.83104 3.97491 4.08320 4.13248 4.27201 4.34240 4.38386 4.43562 4.53255 4.59894 4.66447 4.67152 4.68856 4.70854 4.80487 4.81609 4.88900 4.93082 4.95794 5.01398 5.13108 5.20523 5.22665 5.25150 5.30213 5.32480 5.33436 5.38647 5.43756 5.46776 5.55380 5.57866 5.69077 5.70418 5.94639 6.00986 6.11550 6.36987 6.59256 6.81204 6.85987 7.33847 8.17973 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003066 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.873071 B = 9129.709691 C =10106.497468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.109 0.891 4 C -0.086 4.086 5 C -0.079 4.079 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.120 4.120 9 C -0.116 4.116 10 C -0.115 4.115 11 C 0.498 3.502 12 O -0.569 6.569 13 N -0.640 5.640 14 C 0.032 3.968 15 C -0.113 4.113 16 C -0.215 4.215 17 C -0.100 4.100 18 C -0.235 4.235 19 C 0.055 3.945 20 C -0.472 4.472 21 H 0.069 0.931 22 C 0.052 3.948 23 N -0.846 5.846 24 Si 0.962 3.038 25 H -0.264 1.264 26 H -0.283 1.283 27 H -0.250 1.250 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.413 0.587 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.100 0.900 49 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -1.919 -17.478 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.127 0.873 4 C -0.124 4.124 5 C -0.098 4.098 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.158 4.158 9 C -0.153 4.153 10 C -0.152 4.152 11 C 0.288 3.712 12 O -0.450 6.450 13 N -0.282 5.282 14 C -0.063 4.063 15 C -0.133 4.133 16 C -0.235 4.235 17 C -0.118 4.118 18 C -0.255 4.255 19 C 0.051 3.949 20 C -0.501 4.501 21 H 0.087 0.913 22 C -0.163 4.163 23 N -0.472 5.472 24 Si 0.787 3.213 25 H -0.190 1.190 26 H -0.210 1.210 27 H -0.174 1.174 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.250 0.750 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.118 0.882 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.929 -2.307 -17.496 17.889 hybrid contribution -0.070 0.336 1.099 1.151 sum -2.999 -1.971 -16.397 16.785 Atomic orbital electron populations 1.21836 0.91353 1.02816 1.03851 1.21379 0.98769 1.01019 0.91010 0.87280 1.21357 1.00424 0.98550 0.92046 1.21179 1.00966 0.94579 0.93036 1.21679 0.99922 0.95728 0.98444 1.21526 1.01551 0.98255 0.94164 1.21548 1.00134 0.96167 0.97905 1.21520 1.00640 0.95863 0.97306 1.21576 1.00903 0.98529 0.94212 1.21557 0.79469 0.84955 0.85202 1.90526 1.39052 1.28391 1.86983 1.43149 1.54795 1.25947 1.04280 1.17977 1.09832 0.91331 0.87192 1.21353 0.99936 0.92481 0.99568 1.20778 1.10479 0.99952 0.92245 1.20696 0.99182 0.94262 0.97699 1.20689 1.11203 0.96168 0.97420 1.17664 0.92966 0.93136 0.91168 1.19204 1.38558 0.92434 0.99941 0.91270 1.26680 0.93011 0.96740 0.99864 1.69676 1.35528 1.14933 1.27063 0.85548 0.77899 0.79828 0.78019 1.19034 1.21043 1.17369 0.92615 0.92233 0.88612 0.92168 0.93080 0.89690 0.92952 0.91822 0.91950 0.91409 0.91339 0.92648 0.91495 0.91606 0.91918 0.92830 0.75024 0.85128 0.85716 0.85577 0.88210 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.86 71.98 0.64 -2.38 16 2 C -0.10 -2.60 2.59 -11.54 -0.03 -2.63 16 3 H 0.11 2.57 6.34 -2.39 -0.02 2.55 16 4 C -0.09 -2.04 3.50 30.59 0.11 -1.94 16 5 C -0.08 -1.41 2.05 -10.79 -0.02 -1.43 16 6 C -0.12 -2.11 4.96 30.60 0.15 -1.96 16 7 C -0.12 -1.71 5.92 30.60 0.18 -1.53 16 8 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 9 C -0.12 -1.57 5.92 30.61 0.18 -1.39 16 10 C -0.11 -1.90 5.21 30.61 0.16 -1.74 16 11 C 0.50 18.29 7.00 87.66 0.61 18.90 16 12 O -0.57 -24.39 12.82 -3.01 -0.04 -24.43 16 13 N -0.64 -25.93 5.02 -302.28 -1.52 -27.45 16 14 C 0.03 1.51 6.53 38.88 0.25 1.77 16 15 C -0.11 -5.17 8.78 22.36 0.20 -4.97 16 16 C -0.22 -9.08 10.04 22.42 0.22 -8.86 16 17 C -0.10 -4.25 9.96 22.00 0.22 -4.03 16 18 C -0.24 -11.21 6.84 22.47 0.15 -11.05 16 19 C 0.05 2.75 5.21 -21.18 -0.11 2.64 16 20 C -0.47 -24.77 8.89 23.38 0.21 -24.56 16 21 H 0.07 3.77 7.33 -2.91 -0.02 3.75 16 22 C 0.05 2.66 5.47 85.25 0.47 3.13 16 23 N -0.85 -44.12 13.93 21.83 0.30 -43.82 16 24 Si 0.96 41.80 24.36 68.60 1.67 43.47 16 25 H -0.26 -11.05 6.78 99.48 0.67 -10.38 16 26 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.25 -11.17 6.43 99.48 0.64 -10.53 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.32 7.69 -2.39 -0.02 1.31 16 30 H 0.10 1.51 6.46 -2.39 -0.02 1.50 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.41 7.95 -2.39 -0.02 1.39 16 33 H 0.08 1.34 6.34 -2.39 -0.02 1.32 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.14 6.46 -2.39 -0.02 1.12 16 36 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.41 15.67 7.01 -92.71 -0.65 15.02 16 45 H 0.13 5.97 5.43 -2.91 -0.02 5.96 16 46 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 47 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 48 H 0.10 4.67 4.16 -2.91 -0.01 4.66 16 49 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 Total: -1.00 -60.71 369.27 4.39 -56.33 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: 0.19 Total: 39.36 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 3.77 Total: -43.46 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.21 Total: -71.26 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.43 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.67 Total: 43.47 kcal Total: -60.71 4.39 -56.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583226503.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.093 kcal (2) G-P(sol) polarization free energy of solvation -60.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds