Wall clock time and date at job start Tue Mar 31 2020 10:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87291 * 2 1 4 4 C 1.54314 * 109.87921 * 121.17887 * 2 1 3 5 5 H 1.09002 * 110.72636 * 23.24067 * 4 2 1 6 6 C 1.50708 * 110.72008 * 259.97030 * 4 2 1 7 7 C 1.38239 * 119.99670 * 299.73275 * 6 4 2 8 8 C 1.38235 * 119.99509 * 179.80747 * 7 6 4 9 9 C 1.38236 * 120.00197 * 0.39678 * 8 7 6 10 10 C 1.38230 * 119.99854 * 359.85319 * 9 8 7 11 11 C 1.38230 * 120.00249 * 359.96063 * 10 9 8 12 12 C 1.55157 * 102.94476 * 141.61092 * 4 2 1 13 13 C 1.55132 * 101.48279 * 324.32947 * 12 4 2 14 14 N 1.47023 * 109.87933 * 238.98535 * 2 1 3 15 15 C 1.34777 * 125.65061 * 61.60423 * 14 2 1 16 16 O 1.21284 * 119.99750 * 0.02562 * 15 14 2 17 17 C 1.50696 * 119.99761 * 179.97438 * 15 14 2 18 18 C 1.53002 * 109.46919 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47343 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47346 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.46931 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00193 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99398 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00338 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99424 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47399 * 299.99813 * 25 23 21 28 28 H 1.48498 * 109.47295 * 60.00420 * 25 23 21 29 29 H 1.08999 * 109.47653 * 179.56047 * 1 2 3 30 30 H 1.09000 * 109.47061 * 299.56723 * 1 2 3 31 31 H 1.09006 * 109.47050 * 59.56029 * 1 2 3 32 32 H 1.07997 * 120.00248 * 359.97438 * 7 6 4 33 33 H 1.08006 * 119.99682 * 180.22594 * 8 7 6 34 34 H 1.07999 * 119.99965 * 179.83607 * 9 8 7 35 35 H 1.08000 * 120.00119 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.00369 * 180.02562 * 11 10 9 37 37 H 1.08997 * 111.00761 * 82.56613 * 12 4 2 38 38 H 1.09003 * 111.00454 * 206.42347 * 12 4 2 39 39 H 1.09002 * 110.49573 * 278.45553 * 13 12 4 40 40 H 1.08996 * 110.34579 * 156.05897 * 13 12 4 41 41 H 1.08996 * 109.47244 * 60.00748 * 17 15 14 42 42 H 1.09000 * 109.47319 * 299.99629 * 17 15 14 43 43 H 1.09000 * 109.47312 * 59.99955 * 18 17 15 44 44 H 1.09004 * 109.46930 * 299.99899 * 18 17 15 45 45 H 1.09004 * 109.47368 * 59.99791 * 19 18 17 46 46 H 1.08996 * 109.47261 * 300.00175 * 19 18 17 47 47 H 1.09000 * 109.46986 * 60.00254 * 20 19 18 48 48 H 1.08992 * 109.46974 * 300.00318 * 20 19 18 49 49 H 0.97000 * 119.99706 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2416 5 1 1.3050 -1.4482 1.6162 6 6 2.4669 0.2199 2.3178 7 6 3.4642 1.1444 2.0694 8 6 3.8395 2.0378 3.0552 9 6 3.2233 2.0013 4.2921 10 6 2.2296 1.0735 4.5421 11 6 1.8516 0.1826 3.5551 12 6 3.2876 -1.5153 0.6903 13 6 2.8099 -1.8815 -0.7395 14 7 2.0300 -0.7124 -1.1850 15 6 1.8073 -0.3586 -2.4663 16 8 1.1435 0.6249 -2.7171 17 6 2.3841 -1.1845 -3.5870 18 6 1.9859 -0.5700 -4.9305 19 6 2.5720 -1.4080 -6.0684 20 6 2.1732 -0.7939 -7.4118 21 6 2.7511 -1.6191 -8.5327 22 1 3.3432 -2.4942 -8.3092 23 6 2.5239 -1.2566 -9.8435 24 7 1.8034 -0.1906 -10.1156 25 14 3.2396 -2.2799 -11.2328 26 1 2.8537 -1.6830 -12.5366 27 1 4.7200 -2.3033 -11.1185 28 1 2.7145 -3.6663 -11.1477 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3633 0.5071 0.8938 31 1 -0.3633 0.5207 -0.8861 32 1 3.9483 1.1704 1.1043 33 1 4.6162 2.7625 2.8600 34 1 3.5183 2.6976 5.0631 35 1 1.7484 1.0447 5.5085 36 1 1.0750 -0.5421 3.7502 37 1 4.1654 -0.8699 0.6591 38 1 3.4851 -2.4129 1.2762 39 1 2.1800 -2.7708 -0.7154 40 1 3.6654 -2.0393 -1.3961 41 1 1.9986 -2.2021 -3.5241 42 1 3.4708 -1.2017 -3.5037 43 1 2.3716 0.4476 -4.9932 44 1 0.8992 -0.5524 -5.0141 45 1 2.1867 -2.4258 -6.0059 46 1 3.6586 -1.4252 -5.9846 47 1 2.5583 0.2239 -7.4746 48 1 1.0866 -0.7770 -7.4954 49 1 1.4314 0.3404 -9.3941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:13 Heat of formation + Delta-G solvation = -43.866782 kcal Electronic energy + Delta-G solvation = -25444.961600 eV Core-core repulsion = 21949.284247 eV Total energy + Delta-G solvation = -3495.677353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79351 -39.41137 -37.61695 -35.05920 -33.37875 -32.76176 -31.65008 -31.28285 -30.28407 -29.12160 -26.04374 -25.36427 -23.39675 -23.20025 -22.53403 -21.90646 -20.47088 -20.12785 -18.92354 -17.60820 -16.75649 -16.64033 -16.48248 -15.68028 -15.44226 -15.15499 -14.71215 -14.13455 -14.05031 -13.77429 -13.70510 -13.65312 -13.33468 -13.19896 -12.95877 -12.83440 -12.58737 -12.29250 -12.20656 -12.09086 -11.82194 -11.60225 -11.37030 -11.15914 -11.09568 -10.97364 -10.89824 -10.62793 -10.55210 -10.07956 -9.83271 -9.72270 -9.49310 -9.29853 -9.06922 -8.77136 -8.44437 -8.25472 -6.28799 -3.97293 0.94225 1.02318 2.69632 2.83143 3.35828 3.46940 3.49558 3.68318 4.09687 4.16189 4.25589 4.53957 4.60171 4.61946 4.74468 4.79165 4.80899 4.87424 4.88265 5.10925 5.14063 5.20749 5.25789 5.26555 5.29325 5.35159 5.44373 5.48547 5.53384 5.61007 5.65375 5.70249 5.78071 5.87530 6.03204 6.06607 6.08580 6.14703 6.18492 6.24637 6.29184 6.46272 6.61608 6.73786 6.90215 7.06692 7.42281 7.52172 7.65090 8.21506 8.30575 8.54254 8.96410 9.75392 11.11887 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.032975 B = 0.001936 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.924693 B =14461.416521 C =14511.941021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.077 0.923 4 C -0.059 4.059 5 H 0.094 0.906 6 C -0.071 4.071 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.119 4.119 11 C -0.114 4.114 12 C -0.126 4.126 13 C 0.098 3.902 14 N -0.623 5.623 15 C 0.529 3.471 16 O -0.532 6.532 17 C -0.133 4.133 18 C -0.104 4.104 19 C -0.103 4.103 20 C 0.006 3.994 21 C -0.602 4.602 22 H 0.047 0.953 23 C 0.012 3.988 24 N -0.914 5.914 25 Si 1.069 2.931 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.289 1.289 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.007 0.993 48 H 0.007 0.993 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -1.700 33.649 33.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.095 0.905 4 C -0.077 4.077 5 H 0.113 0.887 6 C -0.071 4.071 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.142 4.142 10 C -0.137 4.137 11 C -0.132 4.132 12 C -0.164 4.164 13 C -0.025 4.025 14 N -0.360 5.360 15 C 0.319 3.681 16 O -0.408 6.408 17 C -0.173 4.173 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.031 4.031 21 C -0.640 4.640 22 H 0.066 0.934 23 C -0.192 4.192 24 N -0.551 5.551 25 Si 0.898 3.102 26 H -0.208 1.208 27 H -0.215 1.215 28 H -0.215 1.215 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.682 -1.251 31.744 31.882 hybrid contribution -0.059 0.052 1.852 1.853 sum 2.624 -1.199 33.596 33.719 Atomic orbital electron populations 1.22139 0.94614 1.02241 1.03083 1.21571 0.94736 0.96256 0.83450 0.90507 1.21297 0.98023 0.95753 0.92672 0.88745 1.19620 0.96470 0.96629 0.94401 1.21055 0.97249 0.95352 0.99414 1.21170 0.99974 0.98841 0.93512 1.21176 0.96886 0.98927 0.97166 1.21143 0.97633 0.95755 0.99193 1.21056 0.99864 0.99363 0.92905 1.22973 0.97404 1.00950 0.95024 1.22394 0.95698 0.88928 0.95478 1.48714 1.53645 1.28493 1.05102 1.20764 0.79950 0.85387 0.82011 1.90697 1.39439 1.27586 1.83073 1.21763 1.01873 0.99837 0.93832 1.21471 1.01495 0.99809 0.91433 1.21513 0.99238 0.98197 0.95094 1.19225 0.96052 0.96010 0.91762 1.22084 1.35922 1.13231 0.92765 0.93432 1.25868 0.95828 0.97727 0.99769 1.70765 1.32208 1.15642 1.36445 0.83546 0.75789 0.75101 0.75791 1.20800 1.21517 1.21510 0.92533 0.91882 0.90878 0.86001 0.86002 0.86152 0.86067 0.86027 0.90060 0.89505 0.91088 0.90005 0.89226 0.89244 0.91869 0.91862 0.93323 0.93324 0.97505 0.97499 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.10 37.16 0.34 -1.37 16 2 C 0.14 1.45 2.96 -66.96 -0.20 1.25 16 3 H 0.08 0.90 7.14 -51.93 -0.37 0.53 16 4 C -0.06 -0.42 2.69 -89.94 -0.24 -0.66 16 5 H 0.09 0.59 7.67 -51.93 -0.40 0.19 16 6 C -0.07 -0.54 4.92 -104.62 -0.51 -1.05 16 7 C -0.11 -0.90 8.16 -39.58 -0.32 -1.22 16 8 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 9 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 10 C -0.12 -0.79 10.05 -39.59 -0.40 -1.18 16 11 C -0.11 -0.79 9.69 -39.59 -0.38 -1.17 16 12 C -0.13 -0.78 6.47 -24.46 -0.16 -0.94 16 13 C 0.10 0.75 6.70 -2.41 -0.02 0.73 16 14 N -0.62 -6.96 3.06 -162.88 -0.50 -7.46 16 15 C 0.53 7.81 7.64 -10.99 -0.08 7.72 16 16 O -0.53 -9.98 15.02 5.55 0.08 -9.90 16 17 C -0.13 -1.86 4.70 -27.88 -0.13 -1.99 16 18 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 19 C -0.10 -2.18 5.15 -26.73 -0.14 -2.32 16 20 C 0.01 0.17 4.28 -27.88 -0.12 0.06 16 21 C -0.60 -17.80 9.11 -34.44 -0.31 -18.11 16 22 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 23 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 24 N -0.91 -29.10 13.65 55.43 0.76 -28.35 16 25 Si 1.07 25.96 29.90 -169.99 -5.08 20.88 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.98 6.88 -51.93 -0.36 0.63 16 32 H 0.12 0.95 7.27 -52.49 -0.38 0.57 16 33 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.12 0.64 7.98 -52.49 -0.42 0.22 16 37 H 0.08 0.52 6.74 -51.93 -0.35 0.17 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.56 7.48 -51.93 -0.39 0.18 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 48 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 49 H 0.27 8.59 7.22 -40.82 -0.29 8.29 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -35.09 392.00 -11.00 -46.09 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.47 Total: -2.63 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -3.69 Total: -24.53 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.26 Total: -35.81 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.09 -11.00 -46.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.223 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds