Wall clock time and date at job start Tue Mar 31 2020 10:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87291 * 2 1 4 4 C 1.54314 * 109.87921 * 121.17887 * 2 1 3 5 5 H 1.09002 * 110.72636 * 23.24067 * 4 2 1 6 6 C 1.50708 * 110.72008 * 259.97030 * 4 2 1 7 7 C 1.38239 * 119.99670 * 299.73275 * 6 4 2 8 8 C 1.38235 * 119.99509 * 179.80747 * 7 6 4 9 9 C 1.38236 * 120.00197 * 0.39678 * 8 7 6 10 10 C 1.38230 * 119.99854 * 359.85319 * 9 8 7 11 11 C 1.38230 * 120.00249 * 359.96063 * 10 9 8 12 12 C 1.55157 * 102.94476 * 141.61092 * 4 2 1 13 13 C 1.55132 * 101.48279 * 324.32947 * 12 4 2 14 14 N 1.47023 * 109.87933 * 238.98535 * 2 1 3 15 15 C 1.34777 * 125.65061 * 61.60423 * 14 2 1 16 16 O 1.21284 * 119.99750 * 0.02562 * 15 14 2 17 17 C 1.50696 * 119.99761 * 179.97438 * 15 14 2 18 18 C 1.53002 * 109.46919 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47343 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47346 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.46931 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00193 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99398 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00338 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99424 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47399 * 299.99813 * 25 23 21 28 28 H 1.48498 * 109.47295 * 60.00420 * 25 23 21 29 29 H 1.08999 * 109.47653 * 179.56047 * 1 2 3 30 30 H 1.09000 * 109.47061 * 299.56723 * 1 2 3 31 31 H 1.09006 * 109.47050 * 59.56029 * 1 2 3 32 32 H 1.07997 * 120.00248 * 359.97438 * 7 6 4 33 33 H 1.08006 * 119.99682 * 180.22594 * 8 7 6 34 34 H 1.07999 * 119.99965 * 179.83607 * 9 8 7 35 35 H 1.08000 * 120.00119 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.00369 * 180.02562 * 11 10 9 37 37 H 1.08997 * 111.00761 * 82.56613 * 12 4 2 38 38 H 1.09003 * 111.00454 * 206.42347 * 12 4 2 39 39 H 1.09002 * 110.49573 * 278.45553 * 13 12 4 40 40 H 1.08996 * 110.34579 * 156.05897 * 13 12 4 41 41 H 1.08996 * 109.47244 * 60.00748 * 17 15 14 42 42 H 1.09000 * 109.47319 * 299.99629 * 17 15 14 43 43 H 1.09000 * 109.47312 * 59.99955 * 18 17 15 44 44 H 1.09004 * 109.46930 * 299.99899 * 18 17 15 45 45 H 1.09004 * 109.47368 * 59.99791 * 19 18 17 46 46 H 1.08996 * 109.47261 * 300.00175 * 19 18 17 47 47 H 1.09000 * 109.46986 * 60.00254 * 20 19 18 48 48 H 1.08992 * 109.46974 * 300.00318 * 20 19 18 49 49 H 0.97000 * 119.99706 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2416 5 1 1.3050 -1.4482 1.6162 6 6 2.4669 0.2199 2.3178 7 6 3.4642 1.1444 2.0694 8 6 3.8395 2.0378 3.0552 9 6 3.2233 2.0013 4.2921 10 6 2.2296 1.0735 4.5421 11 6 1.8516 0.1826 3.5551 12 6 3.2876 -1.5153 0.6903 13 6 2.8099 -1.8815 -0.7395 14 7 2.0300 -0.7124 -1.1850 15 6 1.8073 -0.3586 -2.4663 16 8 1.1435 0.6249 -2.7171 17 6 2.3841 -1.1845 -3.5870 18 6 1.9859 -0.5700 -4.9305 19 6 2.5720 -1.4080 -6.0684 20 6 2.1732 -0.7939 -7.4118 21 6 2.7511 -1.6191 -8.5327 22 1 3.3432 -2.4942 -8.3092 23 6 2.5239 -1.2566 -9.8435 24 7 1.8034 -0.1906 -10.1156 25 14 3.2396 -2.2799 -11.2328 26 1 2.8537 -1.6830 -12.5366 27 1 4.7200 -2.3033 -11.1185 28 1 2.7145 -3.6663 -11.1477 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3633 0.5071 0.8938 31 1 -0.3633 0.5207 -0.8861 32 1 3.9483 1.1704 1.1043 33 1 4.6162 2.7625 2.8600 34 1 3.5183 2.6976 5.0631 35 1 1.7484 1.0447 5.5085 36 1 1.0750 -0.5421 3.7502 37 1 4.1654 -0.8699 0.6591 38 1 3.4851 -2.4129 1.2762 39 1 2.1800 -2.7708 -0.7154 40 1 3.6654 -2.0393 -1.3961 41 1 1.9986 -2.2021 -3.5241 42 1 3.4708 -1.2017 -3.5037 43 1 2.3716 0.4476 -4.9932 44 1 0.8992 -0.5524 -5.0141 45 1 2.1867 -2.4258 -6.0059 46 1 3.6586 -1.4252 -5.9846 47 1 2.5583 0.2239 -7.4746 48 1 1.0866 -0.7770 -7.4954 49 1 1.4314 0.3404 -9.3941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588160641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:12 Heat of formation + Delta-G solvation = -62.363201 kcal Electronic energy + Delta-G solvation = -25445.763665 eV Core-core repulsion = 21949.284247 eV Total energy + Delta-G solvation = -3496.479418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59542 -40.18391 -38.48835 -36.88112 -34.84821 -34.02990 -32.45064 -31.80557 -31.40352 -30.39448 -27.15704 -26.70528 -24.82689 -23.84011 -23.37822 -23.01689 -21.94367 -20.99531 -19.90413 -18.83975 -18.32969 -17.64203 -17.30062 -16.80711 -16.13732 -15.86442 -15.80839 -15.62679 -15.23975 -15.02829 -14.82350 -14.42783 -14.28753 -14.26819 -13.98080 -13.85335 -13.76968 -13.53423 -13.22319 -12.92306 -12.77621 -12.68011 -12.57321 -12.32656 -12.23397 -12.11362 -11.98572 -11.95155 -11.73838 -11.65112 -11.54238 -11.49794 -10.89204 -10.60743 -10.54881 -9.83755 -9.73344 -9.55026 -8.69914 -6.40491 0.41631 0.50562 1.52355 1.57954 1.62242 1.81216 1.91692 2.58217 2.82743 3.15521 3.44445 3.53479 3.62344 3.86482 3.93154 4.01377 4.03340 4.12355 4.16214 4.24812 4.29470 4.33717 4.37289 4.49703 4.52419 4.56798 4.60812 4.66645 4.67680 4.69844 4.78035 4.83213 4.99345 5.01649 5.03543 5.09714 5.11406 5.14989 5.17427 5.19178 5.26256 5.41434 5.47883 5.54832 5.58935 5.64233 5.71250 5.99553 6.12069 6.18146 6.46459 6.55499 7.13176 7.43763 8.70261 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.032975 B = 0.001936 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.924693 B =14461.416521 C =14511.941021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 H 0.054 0.946 4 C -0.047 4.047 5 H 0.112 0.888 6 C -0.080 4.080 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.131 4.131 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.090 3.910 14 N -0.617 5.617 15 C 0.523 3.477 16 O -0.587 6.587 17 C -0.122 4.122 18 C -0.095 4.095 19 C -0.088 4.088 20 C 0.002 3.998 21 C -0.618 4.618 22 H 0.058 0.942 23 C -0.047 4.047 24 N -0.940 5.940 25 Si 1.123 2.877 26 H -0.285 1.285 27 H -0.266 1.266 28 H -0.265 1.265 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.061 0.939 47 H -0.019 1.019 48 H -0.019 1.019 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 -4.567 35.759 36.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.072 0.928 4 C -0.066 4.066 5 H 0.130 0.870 6 C -0.080 4.080 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.149 4.149 10 C -0.143 4.143 11 C -0.137 4.137 12 C -0.156 4.156 13 C -0.032 4.032 14 N -0.351 5.351 15 C 0.313 3.687 16 O -0.467 6.467 17 C -0.161 4.161 18 C -0.133 4.133 19 C -0.126 4.126 20 C -0.035 4.035 21 C -0.656 4.656 22 H 0.076 0.924 23 C -0.244 4.244 24 N -0.578 5.578 25 Si 0.943 3.057 26 H -0.211 1.211 27 H -0.191 1.191 28 H -0.190 1.190 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.079 0.921 47 H -0.001 1.001 48 H 0.000 1.000 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.094 -4.150 33.927 34.424 hybrid contribution -0.508 1.008 1.287 1.712 sum 3.586 -3.142 35.214 35.535 Atomic orbital electron populations 1.22075 0.94977 1.02513 1.01963 1.21656 0.94478 0.95741 0.84552 0.92813 1.21235 0.98822 0.95543 0.90955 0.87016 1.19692 0.96598 0.96801 0.94910 1.21136 0.97925 0.96134 0.99407 1.21382 1.00531 0.99101 0.93875 1.21460 0.96824 0.99313 0.97299 1.21461 0.97443 0.95350 1.00074 1.21322 1.00039 0.99750 0.92603 1.22985 0.96580 1.01738 0.94268 1.22747 0.96056 0.87940 0.96445 1.48723 1.52878 1.29281 1.04231 1.20866 0.79574 0.84827 0.83394 1.90682 1.42022 1.29913 1.84097 1.21628 1.03444 1.00323 0.90697 1.21247 0.99919 0.98667 0.93465 1.21331 1.00060 0.98584 0.92614 1.19238 0.94246 0.94980 0.95018 1.22546 1.35724 1.13619 0.93668 0.92365 1.27648 0.95306 0.97948 1.03462 1.70918 1.34060 1.17024 1.35784 0.82890 0.76368 0.74342 0.72136 1.21096 1.19059 1.19025 0.91414 0.90448 0.94574 0.86687 0.85211 0.84501 0.84082 0.84206 0.90501 0.86879 0.89138 0.88750 0.86581 0.86659 0.93956 0.93881 0.92012 0.92052 1.00078 1.00032 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.10 71.98 0.66 -2.63 16 2 C 0.14 2.75 2.96 45.34 0.13 2.89 16 3 H 0.05 1.32 7.14 -2.39 -0.02 1.30 16 4 C -0.05 -0.57 2.69 -10.35 -0.03 -0.60 16 5 H 0.11 1.01 7.67 -2.39 -0.02 0.99 16 6 C -0.08 -1.09 4.92 -19.86 -0.10 -1.19 16 7 C -0.13 -1.98 8.16 22.27 0.18 -1.80 16 8 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 9 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 10 C -0.13 -1.40 10.05 22.27 0.22 -1.17 16 11 C -0.12 -1.39 9.69 22.27 0.22 -1.17 16 12 C -0.12 -1.11 6.47 32.06 0.21 -0.90 16 13 C 0.09 1.08 6.70 86.93 0.58 1.66 16 14 N -0.62 -13.11 3.06 -787.62 -2.41 -15.52 16 15 C 0.52 15.43 7.64 87.66 0.67 16.10 16 16 O -0.59 -23.22 15.02 -3.04 -0.05 -23.27 16 17 C -0.12 -3.21 4.70 29.85 0.14 -3.07 16 18 C -0.09 -3.55 4.50 30.59 0.14 -3.41 16 19 C -0.09 -3.71 5.15 30.59 0.16 -3.56 16 20 C 0.00 0.12 4.28 29.85 0.13 0.25 16 21 C -0.62 -36.68 9.11 25.60 0.23 -36.45 16 22 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 23 C -0.05 -2.86 5.46 84.66 0.46 -2.39 16 24 N -0.94 -61.45 13.65 21.45 0.29 -61.16 16 25 Si 1.12 51.37 29.90 68.60 2.05 53.42 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.02 6.88 -2.38 -0.02 1.01 16 32 H 0.12 1.84 7.27 -2.91 -0.02 1.82 16 33 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16 36 H 0.14 1.05 7.98 -2.91 -0.02 1.02 16 37 H 0.08 0.82 6.74 -2.39 -0.02 0.81 16 38 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.94 7.48 -2.39 -0.02 0.93 16 41 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.12 2.48 7.85 -2.39 -0.02 2.46 16 43 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 44 H 0.04 1.76 8.10 -2.38 -0.02 1.74 16 45 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 47 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 48 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 49 H 0.25 16.88 7.22 -92.71 -0.67 16.21 16 Total: -1.00 -79.96 392.00 5.33 -74.62 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.00 Total: 12.34 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 4.45 Total: -40.44 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.12 Total: -76.68 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Total: -79.96 5.33 -74.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.260 kcal (2) G-P(sol) polarization free energy of solvation -79.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds