Wall clock time and date at job start Tue Mar 31 2020 11:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00069 * 2 1 4 4 O 1.21281 * 119.99661 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99833 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47153 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47421 * 180.02562 * 6 5 3 8 8 C 1.53005 * 109.46944 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.46785 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99700 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99830 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00070 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99870 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47286 * 90.00008 * 13 11 9 15 15 H 1.48508 * 109.46818 * 209.99493 * 13 11 9 16 16 H 1.48493 * 109.47355 * 329.99194 * 13 11 9 17 17 C 1.46498 * 119.99853 * 180.02562 * 2 1 3 18 18 H 1.09004 * 109.70623 * 179.45872 * 17 2 1 19 19 C 1.53328 * 109.68300 * 299.99778 * 17 2 1 20 20 C 1.52734 * 108.38351 * 189.60633 * 19 17 2 21 21 C 1.50634 * 110.58750 * 308.90921 * 20 19 17 22 22 C 1.38911 * 117.74376 * 197.48233 * 21 20 19 23 23 C 1.37938 * 120.54225 * 180.28608 * 22 21 20 24 24 C 1.38268 * 119.76886 * 0.09005 * 23 22 21 25 25 C 1.37933 * 119.77068 * 0.18321 * 24 23 22 26 26 C 1.37664 * 122.56625 * 17.71030 * 21 20 19 27 27 C 1.50625 * 122.56665 * 359.37353 * 26 21 20 28 28 H 1.09004 * 109.47115 * 270.00437 * 1 2 3 29 29 H 1.09005 * 109.47286 * 29.99634 * 1 2 3 30 30 H 1.09000 * 109.47216 * 149.99893 * 1 2 3 31 31 H 1.08997 * 109.47985 * 300.00041 * 5 3 2 32 32 H 1.09005 * 109.47289 * 60.00495 * 5 3 2 33 33 H 1.09000 * 109.47581 * 300.00475 * 6 5 3 34 34 H 1.08997 * 109.46908 * 60.00060 * 6 5 3 35 35 H 1.08996 * 109.47089 * 300.00222 * 7 6 5 36 36 H 1.09006 * 109.46665 * 60.00582 * 7 6 5 37 37 H 1.08996 * 109.47514 * 300.00090 * 8 7 6 38 38 H 1.08999 * 109.47207 * 60.00770 * 8 7 6 39 39 H 0.96991 * 119.99919 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.67823 * 69.88002 * 19 17 2 41 41 H 1.09001 * 109.68021 * 309.33130 * 19 17 2 42 42 H 1.08998 * 109.24928 * 188.62242 * 20 19 17 43 43 H 1.08999 * 109.21851 * 69.17720 * 20 19 17 44 44 H 1.07994 * 119.73052 * 0.26873 * 22 21 20 45 45 H 1.07996 * 120.11309 * 180.11978 * 23 22 21 46 46 H 1.08002 * 120.10977 * 179.89752 * 24 23 22 47 47 H 1.08003 * 119.72685 * 179.64979 * 25 24 23 48 48 H 1.08998 * 109.25921 * 257.43071 * 27 26 21 49 49 H 1.08993 * 109.25413 * 137.99700 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 6 1.6146 4.9603 0.0002 8 6 2.6090 6.1232 0.0017 9 6 1.8554 7.4283 0.0023 10 1 0.7754 7.4283 0.0022 11 6 2.5448 8.6223 0.0031 12 7 1.8873 9.7613 0.0032 13 14 4.4128 8.6222 0.0026 14 1 4.9075 8.6233 -1.3976 15 1 4.9081 9.8343 0.7034 16 1 4.9080 7.4093 0.7016 17 6 2.1974 -1.2687 -0.0006 18 1 3.2699 -1.0740 -0.0102 19 6 1.8305 -2.0774 1.2494 20 6 2.7778 -3.2716 1.3457 21 6 2.8137 -4.0257 0.0422 22 6 3.3162 -5.3207 0.0580 23 6 3.3811 -6.0615 -1.1038 24 6 2.9445 -5.5108 -2.2945 25 6 2.4505 -4.2231 -2.3131 26 6 2.3760 -3.4786 -1.1427 27 6 1.8118 -2.0849 -1.2327 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7590 2.5299 -0.8907 32 1 0.7584 2.5303 0.8892 33 1 3.0057 3.5775 0.8906 34 1 3.0069 3.5775 -0.8893 35 1 0.9884 5.0183 -0.8899 36 1 0.9877 5.0177 0.8901 37 1 3.2349 6.0650 0.8921 38 1 3.2363 6.0659 -0.8879 39 1 2.3723 10.6013 0.0033 40 1 0.8022 -2.4300 1.1697 41 1 1.9370 -1.4519 2.1356 42 1 2.4362 -3.9383 2.1374 43 1 3.7805 -2.9160 1.5830 44 1 3.6590 -5.7509 0.9873 45 1 3.7712 -7.0684 -1.0832 46 1 2.9943 -6.0854 -3.2077 47 1 2.1149 -3.7916 -3.2445 48 1 0.7254 -2.1406 -1.3012 49 1 2.2029 -1.5957 -2.1247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588366277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:47 Heat of formation + Delta-G solvation = -59.391712 kcal Electronic energy + Delta-G solvation = -25406.038897 eV Core-core repulsion = 21909.688332 eV Total energy + Delta-G solvation = -3496.350565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.54379 -40.44644 -37.81022 -36.62842 -35.32626 -34.57470 -33.40397 -31.97511 -30.70891 -29.61944 -27.88365 -27.46264 -24.82017 -24.11945 -23.07238 -22.93837 -21.72568 -20.44269 -19.89479 -18.86757 -18.02387 -17.50779 -17.17279 -16.93061 -16.37066 -16.30052 -15.74968 -15.71596 -15.22309 -14.94230 -14.84716 -14.59428 -14.30430 -14.11205 -13.88696 -13.72983 -13.64619 -13.58202 -13.51111 -13.15409 -12.97805 -12.86028 -12.50355 -12.36975 -12.31476 -12.06574 -11.89389 -11.77644 -11.75679 -11.48519 -11.47135 -11.34230 -11.26029 -10.76104 -10.71136 -9.69840 -9.65447 -9.43187 -8.29756 -6.32598 0.44434 0.46446 1.34332 1.35764 1.48694 1.62168 1.96827 2.35648 2.83163 3.05555 3.54669 3.64517 3.80101 3.84578 4.00719 4.03683 4.04267 4.13195 4.21456 4.27144 4.28229 4.41207 4.51110 4.55679 4.58975 4.62538 4.66824 4.72724 4.75781 4.83027 4.84592 4.86274 4.93002 5.00748 5.07494 5.13018 5.14220 5.19357 5.24002 5.25312 5.28392 5.54850 5.59879 5.62070 5.64268 5.65622 5.68680 5.73181 6.12992 6.29452 6.37130 6.75156 7.18429 7.32155 8.86724 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.029589 B = 0.002004 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.084033 B =13968.394548 C =14172.221313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.610 5.610 3 C 0.510 3.490 4 O -0.588 6.588 5 C -0.128 4.128 6 C -0.097 4.097 7 C -0.093 4.093 8 C -0.018 4.018 9 C -0.530 4.530 10 H 0.038 0.962 11 C 0.004 3.996 12 N -0.949 5.949 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.253 1.253 17 C 0.138 3.862 18 H 0.070 0.930 19 C -0.118 4.118 20 C -0.077 4.077 21 C -0.090 4.090 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.130 4.130 25 C -0.131 4.131 26 C -0.087 4.087 27 C -0.081 4.081 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.266 0.734 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.099 0.901 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 -37.210 -0.708 37.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.342 5.342 3 C 0.300 3.700 4 O -0.469 6.469 5 C -0.167 4.167 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.055 4.055 9 C -0.568 4.568 10 H 0.056 0.944 11 C -0.193 4.193 12 N -0.590 5.590 13 Si 0.770 3.230 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.177 1.177 17 C 0.035 3.965 18 H 0.088 0.912 19 C -0.156 4.156 20 C -0.114 4.114 21 C -0.090 4.090 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.149 4.149 26 C -0.088 4.088 27 C -0.119 4.119 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.148 0.852 48 H 0.117 0.883 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.537 -37.027 -0.705 37.121 hybrid contribution 0.834 0.713 -0.138 1.106 sum -1.703 -36.314 -0.844 36.364 Atomic orbital electron populations 1.22132 0.77065 1.04938 1.03571 1.47999 1.08455 1.04757 1.72958 1.21250 0.87619 0.86638 0.74507 1.90670 1.16375 1.88014 1.51816 1.21706 0.99060 0.89670 1.06308 1.21287 0.97506 0.93169 1.01595 1.21334 0.97738 0.92551 1.01409 1.19583 0.96025 0.93857 0.96029 1.21540 0.94013 0.91284 1.49922 0.94358 1.25982 1.03827 0.95143 0.94336 1.70055 1.37910 0.98200 1.52877 0.85708 0.79885 0.78211 0.79164 1.19242 1.20669 1.17736 1.20974 0.96906 0.82781 0.95847 0.91185 1.21829 1.00743 0.96127 0.96891 1.20460 1.00161 0.96237 0.94569 1.19833 0.99175 0.95094 0.94890 1.21423 0.99904 0.93894 0.99479 1.21395 0.99820 1.00812 0.92648 1.21365 0.98939 0.95464 0.99044 1.21372 1.00471 0.95136 0.97915 1.19621 1.00179 0.95661 0.93334 1.20722 1.02131 0.91278 0.97763 0.90929 0.89372 0.89151 0.86579 0.86697 0.93212 0.93158 0.92340 0.92367 0.96879 0.96988 0.92522 0.89652 0.91361 0.88538 0.91093 0.84584 0.84156 0.84319 0.85224 0.88320 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 9.53 127.77 1.22 1.88 16 2 N -0.61 -11.49 2.78 -822.46 -2.29 -13.78 16 3 C 0.51 13.56 7.67 87.65 0.67 14.23 16 4 O -0.59 -21.37 15.32 -3.03 -0.05 -21.42 16 5 C -0.13 -3.03 4.25 29.85 0.13 -2.90 16 6 C -0.10 -3.24 4.50 30.59 0.14 -3.10 16 7 C -0.09 -3.59 5.15 30.60 0.16 -3.43 16 8 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 9 C -0.53 -31.38 9.66 25.60 0.25 -31.13 16 10 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 11 C 0.00 0.23 5.47 84.65 0.46 0.69 16 12 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 13 Si 0.95 46.36 27.47 68.60 1.88 48.24 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.25 -11.87 6.54 99.48 0.65 -11.22 16 17 C 0.14 2.60 2.55 45.02 0.11 2.72 16 18 H 0.07 1.83 6.87 -2.38 -0.02 1.82 16 19 C -0.12 -1.67 5.13 30.62 0.16 -1.52 16 20 C -0.08 -1.05 5.67 29.74 0.17 -0.88 16 21 C -0.09 -1.42 5.74 -19.86 -0.11 -1.53 16 22 C -0.13 -1.78 9.61 22.36 0.21 -1.56 16 23 C -0.13 -1.64 10.05 22.21 0.22 -1.42 16 24 C -0.13 -1.73 10.05 22.20 0.22 -1.50 16 25 C -0.13 -1.98 9.61 22.36 0.21 -1.76 16 26 C -0.09 -1.44 5.74 -19.86 -0.11 -1.56 16 27 C -0.08 -1.27 5.10 29.74 0.15 -1.12 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.77 6.44 -2.38 -0.02 0.76 16 30 H 0.09 0.61 6.23 -2.39 -0.01 0.60 16 31 H 0.12 2.21 7.40 -2.39 -0.02 2.19 16 32 H 0.11 2.21 8.11 -2.38 -0.02 2.20 16 33 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 34 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 38 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 39 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.08 0.94 7.97 -2.39 -0.02 0.92 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 0.95 8.13 -2.39 -0.02 0.93 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.14 1.34 8.05 -2.91 -0.02 1.31 16 45 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 46 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 47 H 0.13 1.59 8.05 -2.91 -0.02 1.57 16 48 H 0.10 1.15 6.29 -2.39 -0.02 1.13 16 49 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 Total: -1.00 -76.64 385.56 5.08 -71.56 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.85 Total: 10.38 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 4.38 Total: -34.64 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.99 Total: -74.13 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.24 kcal Total: -76.64 5.08 -71.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588366277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.163 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds