Wall clock time and date at job start Tue Mar 31 2020 11:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 C 1.50703 * 109.46685 * 240.00346 * 2 1 3 5 5 C 1.38233 * 120.00238 * 116.61657 * 4 2 1 6 6 C 1.38229 * 120.00077 * 179.78332 * 5 4 2 7 7 C 1.38234 * 120.00319 * 0.44241 * 6 5 4 8 8 C 1.38243 * 119.99753 * 359.81304 * 7 6 5 9 9 C 1.38236 * 119.99820 * 296.88839 * 4 2 1 10 10 N 1.46491 * 109.47030 * 120.00168 * 2 1 3 11 11 C 1.34775 * 119.99898 * 233.17449 * 10 2 1 12 12 O 1.21286 * 119.99932 * 188.43371 * 11 10 2 13 13 C 1.50704 * 120.00213 * 8.43734 * 11 10 2 14 14 C 1.52994 * 109.47179 * 184.13566 * 13 11 10 15 15 C 1.52998 * 109.47188 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47540 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47531 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99388 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00167 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00057 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47290 * 90.00066 * 21 19 17 23 23 H 1.48502 * 109.46927 * 210.00261 * 21 19 17 24 24 H 1.48501 * 109.46871 * 329.99882 * 21 19 17 25 25 C 1.46502 * 120.00164 * 53.18032 * 10 2 1 26 26 C 1.52996 * 117.49984 * 195.78724 * 25 10 2 27 27 C 1.53005 * 117.49837 * 127.13062 * 25 10 2 28 28 H 1.09000 * 109.47387 * 59.99371 * 1 2 3 29 29 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46946 * 299.99744 * 1 2 3 31 31 H 1.08008 * 119.99639 * 359.97438 * 5 4 2 32 32 H 1.08007 * 120.00338 * 180.27796 * 6 5 4 33 33 H 1.07998 * 120.00358 * 179.83070 * 7 6 5 34 34 H 1.07993 * 119.99854 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.00356 * 359.97438 * 9 4 2 36 36 H 1.08992 * 109.46712 * 304.13539 * 13 11 10 37 37 H 1.08997 * 109.46491 * 64.13344 * 13 11 10 38 38 H 1.09000 * 109.47726 * 300.00095 * 14 13 11 39 39 H 1.09007 * 109.47285 * 59.99989 * 14 13 11 40 40 H 1.09000 * 109.47131 * 300.00786 * 15 14 13 41 41 H 1.09007 * 109.46750 * 59.99988 * 15 14 13 42 42 H 1.09000 * 109.47448 * 300.00467 * 16 15 14 43 43 H 1.09007 * 109.47211 * 60.00145 * 16 15 14 44 44 H 0.97002 * 119.99777 * 180.02562 * 20 19 17 45 45 H 1.08998 * 115.55001 * 341.45906 * 25 10 2 46 46 H 1.09003 * 117.49923 * 0.02562 * 26 25 10 47 47 H 1.09005 * 117.50054 * 145.01690 * 26 25 10 48 48 H 1.09004 * 117.49599 * 214.98044 * 27 25 10 49 49 H 1.08997 * 117.50298 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 6 2.7683 -0.0199 -2.1752 6 6 3.2327 -0.6726 -3.3017 7 6 2.9534 -2.0135 -3.4882 8 6 2.2129 -2.7028 -2.5460 9 6 1.7521 -2.0511 -1.4174 10 7 2.0183 -0.6906 1.1961 11 6 2.9025 -0.0826 2.0115 12 8 3.4229 -0.7046 2.9133 13 6 3.2444 1.3703 1.8029 14 6 4.3391 1.7832 2.7887 15 6 4.6867 3.2580 2.5765 16 6 5.7819 3.6708 3.5619 17 6 6.1238 5.1236 3.3532 18 1 5.6115 5.6951 2.5935 19 6 7.0914 5.7228 4.1316 20 7 7.7162 5.0264 5.0558 21 14 7.5147 7.5238 3.8734 22 1 6.6499 8.3646 4.7396 23 1 8.9392 7.7527 4.2248 24 1 7.2915 7.8856 2.4506 25 6 1.5456 -2.0422 1.5058 26 6 1.7849 -2.5669 2.9229 27 6 2.6023 -3.1208 1.7533 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.9830 1.0288 -2.0316 32 1 3.8116 -0.1343 -4.0377 33 1 3.3140 -2.5228 -4.3696 34 1 1.9943 -3.7503 -2.6919 35 1 1.1737 -2.5896 -0.6813 36 1 3.5998 1.5170 0.7830 37 1 2.3565 1.9800 1.9696 38 1 3.9839 1.6364 3.8087 39 1 5.2271 1.1733 2.6220 40 1 5.0421 3.4044 1.5565 41 1 3.7989 3.8681 2.7429 42 1 5.4269 3.5243 4.5820 43 1 6.6696 3.0607 3.3950 44 1 8.3967 5.4481 5.6036 45 1 0.6254 -2.3445 1.0060 46 1 2.2937 -1.9062 3.6250 47 1 1.0222 -3.2146 3.3554 48 1 2.3770 -4.1327 1.4165 49 1 3.6491 -2.8249 1.6852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588851397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:12 Heat of formation + Delta-G solvation = 8.078925 kcal Electronic energy + Delta-G solvation = -26218.520457 eV Core-core repulsion = 22725.095639 eV Total energy + Delta-G solvation = -3493.424819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.86873 -39.28259 -36.81811 -35.66006 -34.67857 -32.57223 -31.59731 -31.18105 -29.66138 -29.26729 -25.85876 -24.41007 -23.53664 -22.65737 -22.29754 -21.55779 -21.41384 -19.97230 -18.77630 -17.41534 -16.90387 -16.43805 -16.07072 -15.80493 -15.22999 -14.95894 -14.68527 -14.43019 -14.27647 -14.04936 -13.76650 -13.54941 -13.46563 -13.22309 -12.58538 -12.53094 -12.35403 -12.25656 -11.88117 -11.68770 -11.57147 -11.51404 -11.28090 -11.16122 -11.00636 -10.94991 -10.51435 -10.48744 -10.41799 -10.36445 -9.59979 -9.48042 -9.18816 -9.15599 -9.02221 -8.95613 -8.49746 -8.29347 -5.94085 -3.96589 1.04211 1.16428 2.60937 2.76804 3.34717 3.40719 3.43825 3.55675 3.84797 4.26369 4.46446 4.49285 4.53869 4.67561 4.72627 4.82152 4.85948 4.89413 5.02408 5.04109 5.19765 5.25570 5.30068 5.33703 5.38669 5.41417 5.47533 5.51614 5.67390 5.69501 5.76778 5.79740 5.87067 5.99794 6.14400 6.20604 6.26466 6.29367 6.30101 6.31724 6.55755 6.65262 6.73553 6.85133 7.02455 7.20695 7.31455 7.75401 7.91535 8.07416 8.22771 8.49174 9.11164 9.67014 11.17270 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015107 B = 0.002749 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.978829 B =10182.948699 C =11229.543693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.106 0.894 4 C -0.098 4.098 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.123 4.123 9 C -0.103 4.103 10 N -0.585 5.585 11 C 0.517 3.483 12 O -0.523 6.523 13 C -0.140 4.140 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.069 3.931 26 C -0.191 4.191 27 C -0.184 4.184 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.124 0.876 46 H 0.136 0.864 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 -16.781 -16.521 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.071 3.929 3 H 0.124 0.876 4 C -0.099 4.099 5 C -0.126 4.126 6 C -0.138 4.138 7 C -0.138 4.138 8 C -0.141 4.141 9 C -0.121 4.121 10 N -0.316 5.316 11 C 0.307 3.693 12 O -0.399 6.399 13 C -0.180 4.180 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.035 4.035 26 C -0.228 4.228 27 C -0.223 4.223 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.142 0.858 46 H 0.153 0.847 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.922 -17.069 -15.888 28.812 hybrid contribution 0.310 0.875 -0.287 0.971 sum -16.612 -16.194 -16.175 28.282 Atomic orbital electron populations 1.22170 0.93655 1.02815 1.03025 1.20101 0.94848 0.96238 0.81676 0.87572 1.20106 0.99045 0.94771 0.95947 1.21102 0.97246 1.00125 0.94108 1.21152 0.99923 0.94884 0.97810 1.21181 0.98616 0.94715 0.99245 1.21136 0.98607 0.99807 0.94508 1.21130 0.99661 0.94088 0.97207 1.47512 1.44726 1.15058 1.24344 1.21118 0.77386 0.89899 0.80901 1.90562 1.50327 1.66231 1.32749 1.21877 1.01968 0.91464 1.02702 1.21452 0.96478 0.98056 0.98041 1.21643 1.00096 0.92441 1.00543 1.19089 0.92809 0.95822 0.93959 1.21282 1.20226 0.96056 1.18273 0.92769 1.25040 0.96264 0.97932 0.95328 1.69975 1.25634 1.36128 1.21734 0.86617 0.77549 0.85537 0.78421 1.20709 1.21261 1.19912 1.21585 0.98374 0.82744 1.00808 1.23805 1.02844 1.03469 0.92709 1.23229 0.98364 0.97325 1.03381 0.90964 0.92041 0.91362 0.85730 0.85921 0.86229 0.86222 0.85918 0.89440 0.88986 0.91673 0.91936 0.93546 0.93486 0.96605 0.96628 0.93049 0.85813 0.84675 0.89472 0.89106 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.93 37.16 0.33 -0.75 16 2 C 0.17 1.53 2.85 -69.09 -0.20 1.33 16 3 H 0.11 0.88 5.52 -51.93 -0.29 0.59 16 4 C -0.10 -0.89 4.97 -104.62 -0.52 -1.41 16 5 C -0.11 -0.96 9.67 -39.59 -0.38 -1.35 16 6 C -0.12 -1.02 10.05 -39.59 -0.40 -1.41 16 7 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 8 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 9 C -0.10 -0.89 8.44 -39.58 -0.33 -1.22 16 10 N -0.58 -6.49 2.72 -159.90 -0.43 -6.92 16 11 C 0.52 7.37 7.45 -10.98 -0.08 7.29 16 12 O -0.52 -9.15 11.74 5.55 0.07 -9.08 16 13 C -0.14 -1.91 4.13 -27.88 -0.12 -2.03 16 14 C -0.10 -1.84 4.51 -26.74 -0.12 -1.96 16 15 C -0.11 -2.26 5.15 -26.74 -0.14 -2.40 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.07 0.70 4.18 -67.93 -0.28 0.42 16 26 C -0.19 -2.21 9.62 -26.70 -0.26 -2.47 16 27 C -0.18 -2.05 9.88 -26.69 -0.26 -2.32 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.39 6.08 -51.93 -0.32 0.07 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.12 0.96 7.95 -52.48 -0.42 0.55 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.94 4.97 -52.49 -0.26 0.68 16 36 H 0.09 1.05 7.33 -51.93 -0.38 0.67 16 37 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 38 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.12 0.96 5.28 -51.93 -0.27 0.69 16 46 H 0.14 2.01 5.27 -51.99 -0.27 1.74 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.10 1.36 7.57 -51.93 -0.39 0.97 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -33.36 387.70 -10.97 -44.33 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.06 Total: 0.30 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -4.10 Total: -24.48 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.30 Total: -33.86 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.36 -10.97 -44.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588851397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.409 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds