Wall clock time and date at job start Tue Mar 31 2020 11:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 C 1.50703 * 109.46685 * 240.00346 * 2 1 3 5 5 C 1.38233 * 120.00238 * 116.61657 * 4 2 1 6 6 C 1.38229 * 120.00077 * 179.78332 * 5 4 2 7 7 C 1.38234 * 120.00319 * 0.44241 * 6 5 4 8 8 C 1.38243 * 119.99753 * 359.81304 * 7 6 5 9 9 C 1.38236 * 119.99820 * 296.88839 * 4 2 1 10 10 N 1.46491 * 109.47030 * 120.00168 * 2 1 3 11 11 C 1.34775 * 119.99898 * 233.17449 * 10 2 1 12 12 O 1.21286 * 119.99932 * 188.43371 * 11 10 2 13 13 C 1.50704 * 120.00213 * 8.43734 * 11 10 2 14 14 C 1.52994 * 109.47179 * 184.13566 * 13 11 10 15 15 C 1.52998 * 109.47188 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47540 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47531 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99388 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00167 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00057 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47290 * 90.00066 * 21 19 17 23 23 H 1.48502 * 109.46927 * 210.00261 * 21 19 17 24 24 H 1.48501 * 109.46871 * 329.99882 * 21 19 17 25 25 C 1.46502 * 120.00164 * 53.18032 * 10 2 1 26 26 C 1.52996 * 117.49984 * 195.78724 * 25 10 2 27 27 C 1.53005 * 117.49837 * 127.13062 * 25 10 2 28 28 H 1.09000 * 109.47387 * 59.99371 * 1 2 3 29 29 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46946 * 299.99744 * 1 2 3 31 31 H 1.08008 * 119.99639 * 359.97438 * 5 4 2 32 32 H 1.08007 * 120.00338 * 180.27796 * 6 5 4 33 33 H 1.07998 * 120.00358 * 179.83070 * 7 6 5 34 34 H 1.07993 * 119.99854 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.00356 * 359.97438 * 9 4 2 36 36 H 1.08992 * 109.46712 * 304.13539 * 13 11 10 37 37 H 1.08997 * 109.46491 * 64.13344 * 13 11 10 38 38 H 1.09000 * 109.47726 * 300.00095 * 14 13 11 39 39 H 1.09007 * 109.47285 * 59.99989 * 14 13 11 40 40 H 1.09000 * 109.47131 * 300.00786 * 15 14 13 41 41 H 1.09007 * 109.46750 * 59.99988 * 15 14 13 42 42 H 1.09000 * 109.47448 * 300.00467 * 16 15 14 43 43 H 1.09007 * 109.47211 * 60.00145 * 16 15 14 44 44 H 0.97002 * 119.99777 * 180.02562 * 20 19 17 45 45 H 1.08998 * 115.55001 * 341.45906 * 25 10 2 46 46 H 1.09003 * 117.49923 * 0.02562 * 26 25 10 47 47 H 1.09005 * 117.50054 * 145.01690 * 26 25 10 48 48 H 1.09004 * 117.49599 * 214.98044 * 27 25 10 49 49 H 1.08997 * 117.50298 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 6 2.7683 -0.0199 -2.1752 6 6 3.2327 -0.6726 -3.3017 7 6 2.9534 -2.0135 -3.4882 8 6 2.2129 -2.7028 -2.5460 9 6 1.7521 -2.0511 -1.4174 10 7 2.0183 -0.6906 1.1961 11 6 2.9025 -0.0826 2.0115 12 8 3.4229 -0.7046 2.9133 13 6 3.2444 1.3703 1.8029 14 6 4.3391 1.7832 2.7887 15 6 4.6867 3.2580 2.5765 16 6 5.7819 3.6708 3.5619 17 6 6.1238 5.1236 3.3532 18 1 5.6115 5.6951 2.5935 19 6 7.0914 5.7228 4.1316 20 7 7.7162 5.0264 5.0558 21 14 7.5147 7.5238 3.8734 22 1 6.6499 8.3646 4.7396 23 1 8.9392 7.7527 4.2248 24 1 7.2915 7.8856 2.4506 25 6 1.5456 -2.0422 1.5058 26 6 1.7849 -2.5669 2.9229 27 6 2.6023 -3.1208 1.7533 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.9830 1.0288 -2.0316 32 1 3.8116 -0.1343 -4.0377 33 1 3.3140 -2.5228 -4.3696 34 1 1.9943 -3.7503 -2.6919 35 1 1.1737 -2.5896 -0.6813 36 1 3.5998 1.5170 0.7830 37 1 2.3565 1.9800 1.9696 38 1 3.9839 1.6364 3.8087 39 1 5.2271 1.1733 2.6220 40 1 5.0421 3.4044 1.5565 41 1 3.7989 3.8681 2.7429 42 1 5.4269 3.5243 4.5820 43 1 6.6696 3.0607 3.3950 44 1 8.3967 5.4481 5.6036 45 1 0.6254 -2.3445 1.0060 46 1 2.2937 -1.9062 3.6250 47 1 1.0222 -3.2146 3.3554 48 1 2.3770 -4.1327 1.4165 49 1 3.6491 -2.8249 1.6852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588851397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:09 Heat of formation + Delta-G solvation = -8.491457 kcal Electronic energy + Delta-G solvation = -26219.239003 eV Core-core repulsion = 22725.095639 eV Total energy + Delta-G solvation = -3494.143364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.78546 -40.01684 -37.83612 -36.72423 -36.14531 -34.53188 -32.49530 -31.78681 -31.26871 -29.93221 -27.61480 -25.21490 -24.75318 -23.60453 -23.16467 -22.78912 -22.14397 -21.67467 -19.75642 -18.42954 -18.25320 -17.54898 -17.23627 -16.94293 -16.52091 -16.05351 -15.66724 -15.54972 -15.53733 -14.92169 -14.57584 -14.54996 -14.36490 -14.13756 -14.03110 -13.69836 -13.60840 -13.27321 -13.16334 -12.91360 -12.84110 -12.52330 -12.39879 -12.31877 -12.22652 -12.13723 -11.97241 -11.87236 -11.66273 -11.39074 -11.32626 -11.23722 -11.09048 -10.55363 -10.43458 -9.76730 -9.65250 -9.42457 -8.18885 -6.31201 0.41478 0.55326 1.40194 1.42613 1.53255 1.53655 1.89025 2.41818 2.88751 3.02174 3.13896 3.48888 3.65107 3.83879 3.90317 3.99637 4.07072 4.11605 4.12309 4.17739 4.25722 4.30117 4.36025 4.53362 4.61470 4.63675 4.68729 4.72340 4.78521 4.82095 4.84686 4.91585 4.95543 5.08542 5.12727 5.16420 5.19525 5.29912 5.31774 5.34627 5.38063 5.55681 5.60636 5.65947 5.67290 5.75822 5.77119 5.87402 6.14692 6.24903 6.35531 6.87262 7.17574 7.38536 8.93475 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015107 B = 0.002749 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.978829 B =10182.948699 C =11229.543693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.171 3.829 3 H 0.112 0.888 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.132 4.132 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.111 4.111 10 N -0.577 5.577 11 C 0.510 3.490 12 O -0.565 6.565 13 C -0.131 4.131 14 C -0.092 4.092 15 C -0.094 4.094 16 C 0.020 3.980 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.258 1.258 25 C 0.079 3.921 26 C -0.202 4.202 27 C -0.185 4.185 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.061 0.939 42 H -0.016 1.016 43 H -0.017 1.017 44 H 0.263 0.737 45 H 0.158 0.842 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.425 -16.222 -18.992 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.068 3.932 3 H 0.130 0.870 4 C -0.109 4.109 5 C -0.140 4.140 6 C -0.150 4.150 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.129 4.129 10 N -0.307 5.307 11 C 0.300 3.700 12 O -0.445 6.445 13 C -0.170 4.170 14 C -0.130 4.130 15 C -0.132 4.132 16 C -0.017 4.017 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.182 1.182 25 C -0.024 4.024 26 C -0.240 4.240 27 C -0.224 4.224 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.003 0.997 43 H 0.001 0.999 44 H 0.071 0.929 45 H 0.175 0.825 46 H 0.118 0.882 47 H 0.129 0.871 48 H 0.135 0.865 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.043 -16.514 -18.403 31.209 hybrid contribution 0.988 0.632 0.473 1.264 sum -18.056 -15.882 -17.930 29.995 Atomic orbital electron populations 1.22149 0.91797 1.03570 1.03672 1.20336 0.96269 0.96184 0.80381 0.86979 1.20175 0.99525 0.95171 0.96068 1.21323 0.97455 1.00802 0.94461 1.21414 1.00122 0.95371 0.98106 1.21478 0.98405 0.94781 0.99912 1.21426 0.98320 1.00796 0.94315 1.21313 0.99867 0.94073 0.97673 1.47547 1.43432 1.15392 1.24310 1.21207 0.77762 0.90108 0.80875 1.90582 1.52121 1.67094 1.34699 1.21753 1.01283 0.91712 1.02262 1.21219 0.97273 0.96093 0.98466 1.21436 0.98420 0.94084 0.99244 1.19041 0.93546 0.95118 0.94011 1.21753 1.20536 0.97034 1.18607 0.91518 1.26098 0.96046 1.03450 0.94807 1.70136 1.26331 1.38584 1.22848 0.85382 0.77268 0.78817 0.79190 1.19672 1.20971 1.18223 1.21867 0.98928 0.81901 0.99722 1.23693 1.03578 1.03879 0.92832 1.23168 0.96646 0.98971 1.03616 0.89655 0.91263 0.91347 0.84893 0.84729 0.84575 0.84463 0.84953 0.87179 0.86394 0.93680 0.94175 0.92167 0.91980 0.99747 0.99859 0.92857 0.82451 0.88246 0.87126 0.86474 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.93 71.98 0.64 -0.98 16 2 C 0.17 2.57 2.85 44.25 0.13 2.70 16 3 H 0.11 1.54 5.52 -2.39 -0.01 1.53 16 4 C -0.11 -1.75 4.97 -19.87 -0.10 -1.84 16 5 C -0.12 -1.98 9.67 22.27 0.22 -1.76 16 6 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 7 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 8 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 9 C -0.11 -1.67 8.44 22.27 0.19 -1.48 16 10 N -0.58 -12.02 2.72 -778.18 -2.11 -14.14 16 11 C 0.51 14.55 7.45 87.66 0.65 15.20 16 12 O -0.57 -20.84 11.74 -3.05 -0.04 -20.88 16 13 C -0.13 -3.43 4.13 29.85 0.12 -3.31 16 14 C -0.09 -3.42 4.51 30.59 0.14 -3.28 16 15 C -0.09 -3.90 5.15 30.59 0.16 -3.75 16 16 C 0.02 1.11 4.97 29.85 0.15 1.26 16 17 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 18 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 20 N -0.94 -59.57 13.29 21.45 0.28 -59.29 16 21 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 C 0.08 1.48 4.18 44.99 0.19 1.67 16 26 C -0.20 -4.63 9.62 30.62 0.29 -4.34 16 27 C -0.19 -4.03 9.88 30.62 0.30 -3.73 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.62 6.08 -2.39 -0.01 0.61 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.13 1.81 7.95 -2.91 -0.02 1.78 16 32 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.13 1.62 4.97 -2.91 -0.01 1.60 16 36 H 0.11 2.41 7.33 -2.39 -0.02 2.39 16 37 H 0.12 2.51 8.11 -2.39 -0.02 2.49 16 38 H 0.04 1.82 8.06 -2.39 -0.02 1.80 16 39 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 44 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.16 1.89 5.28 -2.39 -0.01 1.87 16 46 H 0.10 3.12 5.27 -3.32 -0.02 3.11 16 47 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 49 H 0.06 1.82 7.57 -2.39 -0.02 1.80 16 Total: -1.00 -75.80 387.70 5.52 -70.28 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.91 Total: 16.99 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 4.45 Total: -40.00 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.83 Total: -73.42 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.04 Total: -20.88 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.80 5.52 -70.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588851397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.793 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds