Wall clock time and date at job start Tue Mar 31 2020 10:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.51113 * 2 1 4 4 C 1.53097 * 109.51565 * 120.10018 * 2 1 3 5 5 N 1.47016 * 109.29232 * 177.22786 * 4 2 1 6 6 C 1.46905 * 110.99716 * 177.24916 * 5 4 2 7 7 C 1.50702 * 109.46926 * 66.05145 * 6 5 4 8 8 C 1.38636 * 119.75076 * 89.99790 * 7 6 5 9 9 C 1.37611 * 120.25151 * 180.02562 * 8 7 6 10 10 C 1.40722 * 119.74546 * 359.97438 * 9 8 7 11 11 C 1.41393 * 120.24478 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00196 * 335.04437 * 11 10 9 13 13 C 1.39943 * 119.99706 * 155.04512 * 11 10 9 14 14 N 1.30827 * 120.00209 * 334.23259 * 13 11 10 15 15 Si 1.86800 * 120.00120 * 154.23199 * 13 11 10 16 16 H 1.48509 * 109.46982 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47448 * 240.00124 * 15 13 11 18 18 H 1.48493 * 109.47269 * 119.99785 * 15 13 11 19 19 C 1.40719 * 119.50978 * 0.27869 * 10 9 8 20 20 C 1.37624 * 119.74119 * 359.42406 * 19 10 9 21 21 C 1.47069 * 110.72432 * 301.00477 * 5 4 2 22 22 C 1.52742 * 109.32195 * 57.92511 * 21 5 4 23 23 C 1.53576 * 110.01522 * 65.91539 * 22 21 5 24 24 C 1.54345 * 106.49867 * 119.05811 * 23 22 21 25 25 C 1.54921 * 104.20094 * 23.55988 * 24 23 22 26 26 C 1.53992 * 109.76186 * 183.26212 * 22 21 5 27 27 O 1.42614 * 110.26656 * 304.33519 * 22 21 5 28 28 H 1.09001 * 109.46802 * 299.89801 * 1 2 3 29 29 H 1.08996 * 109.47152 * 59.89721 * 1 2 3 30 30 H 1.08999 * 109.47096 * 179.89789 * 1 2 3 31 31 H 1.09009 * 109.49749 * 57.28649 * 4 2 1 32 32 H 1.08997 * 109.50186 * 297.17976 * 4 2 1 33 33 H 1.09000 * 109.47521 * 306.05194 * 6 5 4 34 34 H 1.08999 * 109.46593 * 186.04483 * 6 5 4 35 35 H 1.08002 * 119.87322 * 0.02562 * 8 7 6 36 36 H 1.07997 * 120.13362 * 179.97438 * 9 8 7 37 37 H 0.97000 * 119.99756 * 354.23951 * 14 13 11 38 38 H 1.08001 * 120.12862 * 179.70537 * 19 10 9 39 39 H 1.08004 * 119.87155 * 180.32363 * 20 19 10 40 40 H 1.09001 * 109.49395 * 177.88128 * 21 5 4 41 41 H 1.09000 * 109.49623 * 297.97499 * 21 5 4 42 42 H 1.09002 * 110.04978 * 238.31724 * 23 22 21 43 43 H 1.08998 * 110.05191 * 359.79892 * 23 22 21 44 44 H 1.09003 * 110.48548 * 264.88204 * 24 23 22 45 45 H 1.08997 * 110.48948 * 142.24241 * 24 23 22 46 46 H 1.08991 * 110.75412 * 203.89653 * 25 24 23 47 47 H 1.09003 * 110.74814 * 80.53425 * 25 24 23 48 48 H 1.09005 * 110.49834 * 335.92858 * 26 22 21 49 49 H 1.08998 * 110.50252 * 98.47249 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0415 -0.7237 1.2484 5 7 3.5101 -0.7792 1.2103 6 6 4.0448 -1.4096 2.4247 7 6 3.6322 -2.8586 2.4617 8 6 4.4450 -3.8204 1.8819 9 6 4.0780 -5.1463 1.9093 10 6 2.8728 -5.5245 2.5295 11 6 2.4857 -6.8840 2.5642 12 1 2.8526 -7.5693 1.8145 13 6 1.6270 -7.3415 3.5701 14 7 1.5752 -6.7185 4.7194 15 14 0.5548 -8.8417 3.2719 16 1 0.7990 -9.3604 1.9020 17 1 -0.8746 -8.4642 3.4112 18 1 0.8880 -9.8937 4.2656 19 6 2.0530 -4.5391 3.1101 20 6 2.4431 -3.2197 3.0762 21 6 3.9732 -1.4816 0.0041 22 6 3.4303 -0.7713 -1.2343 23 6 4.0467 0.6307 -1.3487 24 6 4.8169 0.6631 -2.6858 25 6 4.1396 -0.4366 -3.5413 26 6 3.8412 -1.5452 -2.5006 27 8 2.0089 -0.6767 -1.1662 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0018 31 1 1.6396 -1.7367 1.2720 32 1 1.7207 -0.1836 2.1392 33 1 3.6521 -0.8974 3.3031 34 1 5.1326 -1.3416 2.4204 35 1 5.3698 -3.5278 1.4068 36 1 4.7124 -5.8940 1.4566 37 1 2.1904 -5.9919 4.9053 38 1 1.1236 -4.8176 3.5845 39 1 1.8180 -2.4623 3.5258 40 1 5.0629 -1.4783 -0.0230 41 1 3.6124 -2.5101 0.0209 42 1 3.2603 1.3855 -1.3519 43 1 4.7310 0.8069 -0.5188 44 1 5.8691 0.4279 -2.5257 45 1 4.7112 1.6372 -3.1634 46 1 4.8204 -0.8018 -4.3101 47 1 3.2161 -0.0658 -3.9861 48 1 4.7341 -2.1410 -2.3109 49 1 3.0242 -2.1814 -2.8411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592195546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:57 Heat of formation + Delta-G solvation = -45.436338 kcal Electronic energy + Delta-G solvation = -27587.639091 eV Core-core repulsion = 24091.893677 eV Total energy + Delta-G solvation = -3495.745415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.37555 -38.13844 -36.55680 -35.51102 -33.64110 -32.06933 -30.34279 -29.46762 -28.79738 -28.53500 -26.78162 -25.43036 -24.23497 -22.15256 -21.57691 -21.04772 -20.61086 -19.91647 -18.66330 -17.95802 -16.63788 -15.89221 -15.48538 -15.32064 -14.92903 -14.47072 -14.23786 -14.11878 -13.93868 -13.75187 -13.52380 -13.18770 -12.89731 -12.41711 -12.33631 -12.24900 -12.15792 -11.85996 -11.63648 -11.41164 -11.29596 -11.20157 -11.12384 -11.08424 -10.89888 -10.77507 -10.66701 -10.57971 -10.54323 -10.45652 -10.07793 -9.68541 -9.58941 -9.23119 -9.00964 -7.94348 -7.73147 -7.54012 -7.22007 -4.48665 2.66339 2.81479 3.12649 3.22245 3.31708 3.80049 3.97755 4.20974 4.52092 4.61900 4.66836 4.87406 5.06543 5.18153 5.25130 5.32878 5.44587 5.48471 5.50433 5.58187 5.63967 5.65158 5.70391 5.79126 5.84770 5.88099 5.89686 5.95493 6.00420 6.05790 6.13344 6.16072 6.17279 6.23534 6.24846 6.28222 6.30101 6.40590 6.46824 6.72075 6.93078 7.08944 7.28903 7.34723 7.36584 7.52068 7.62650 7.72430 7.78080 7.90848 8.15032 8.26960 8.71207 8.84193 10.00111 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.003553 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.318186 B = 7879.552390 C = 8008.943081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.061 0.939 4 C 0.021 3.979 5 N -0.529 5.529 6 C 0.115 3.885 7 C -0.263 4.263 8 C -0.066 4.066 9 C -0.230 4.230 10 C 0.101 3.899 11 C -0.522 4.522 12 H 0.075 0.925 13 C 0.039 3.961 14 N -0.796 5.796 15 Si 1.068 2.932 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.278 1.278 19 C -0.222 4.222 20 C -0.067 4.067 21 C 0.033 3.967 22 C 0.121 3.879 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.112 4.112 27 O -0.371 6.371 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.300 0.700 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 12.436 -9.688 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.079 0.921 4 C -0.107 4.107 5 N -0.251 5.251 6 C -0.012 4.012 7 C -0.266 4.266 8 C -0.085 4.085 9 C -0.250 4.250 10 C 0.098 3.902 11 C -0.549 4.549 12 H 0.093 0.907 13 C -0.183 4.183 14 N -0.419 5.419 15 Si 0.892 3.108 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.203 1.203 19 C -0.241 4.241 20 C -0.086 4.086 21 C -0.095 4.095 22 C 0.081 3.919 23 C -0.175 4.175 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.150 4.150 27 O -0.291 6.291 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.931 11.951 -9.091 15.045 hybrid contribution 1.096 0.171 -0.256 1.139 sum 2.028 12.123 -9.347 15.442 Atomic orbital electron populations 1.21735 0.93314 1.03061 1.02030 1.22114 0.94290 0.95447 0.84950 0.92138 1.22769 0.89042 1.00979 0.97927 1.62784 1.08290 1.51433 1.02608 1.20818 0.98665 0.90551 0.91159 1.19567 0.99864 0.94741 1.12400 1.20401 0.96975 0.93194 0.97929 1.20926 0.98329 0.94674 1.11060 1.17673 0.89687 0.93293 0.89560 1.20632 1.26559 0.94937 1.12818 0.90673 1.27019 0.96458 1.02877 0.91910 1.70404 1.32192 1.18350 1.20978 0.83603 0.76379 0.74134 0.76665 1.20101 1.19903 1.20345 1.21129 1.00716 0.92353 1.09933 1.20443 0.95227 0.95291 0.97686 1.22707 0.99853 0.97547 0.89431 1.21915 0.80971 0.94427 0.94579 1.22652 1.00089 0.96994 0.97795 1.22362 0.99283 0.98712 0.95751 1.22487 1.00379 0.95776 0.97262 1.22325 1.01593 0.97575 0.93489 1.87937 1.20480 1.78286 1.42381 0.91215 0.92021 0.91729 0.92499 0.90725 0.91652 0.91616 0.89646 0.89091 0.88666 0.87863 0.89654 0.90700 0.92333 0.91473 0.90418 0.91744 0.91972 0.91661 0.91392 0.90327 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 37.16 0.36 -1.40 16 2 C 0.09 1.27 3.10 -26.68 -0.08 1.18 16 3 H 0.06 0.81 6.67 -51.93 -0.35 0.46 16 4 C 0.02 0.34 4.38 -3.71 -0.02 0.32 16 5 N -0.53 -8.39 4.60 -235.92 -1.08 -9.48 16 6 C 0.11 1.96 5.57 -4.97 -0.03 1.93 16 7 C -0.26 -5.43 4.04 -104.33 -0.42 -5.85 16 8 C -0.07 -1.43 7.87 -39.66 -0.31 -1.74 16 9 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 10 C 0.10 2.66 5.30 -106.82 -0.57 2.09 16 11 C -0.52 -13.91 8.99 -37.74 -0.34 -14.25 16 12 H 0.08 1.97 7.96 -52.49 -0.42 1.55 16 13 C 0.04 1.00 4.93 -17.34 -0.09 0.91 16 14 N -0.80 -21.14 12.31 55.55 0.68 -20.45 16 15 Si 1.07 21.71 30.00 -169.99 -5.10 16.61 16 16 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 19 C -0.22 -5.62 7.96 -38.87 -0.31 -5.93 16 20 C -0.07 -1.51 8.00 -39.66 -0.32 -1.82 16 21 C 0.03 0.52 3.16 -3.86 -0.01 0.51 16 22 C 0.12 1.71 0.96 -89.94 -0.09 1.62 16 23 C -0.14 -1.68 5.49 -25.73 -0.14 -1.82 16 24 C -0.12 -1.26 6.84 -25.01 -0.17 -1.43 16 25 C -0.12 -1.27 6.91 -24.68 -0.17 -1.44 16 26 C -0.11 -1.42 6.08 -25.18 -0.15 -1.57 16 27 O -0.37 -5.83 9.84 -35.23 -0.35 -6.18 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.08 6.35 -51.92 -0.33 0.75 16 32 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 33 H 0.06 1.07 8.04 -51.93 -0.42 0.66 16 34 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 35 H 0.09 1.65 8.01 -52.49 -0.42 1.23 16 36 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.30 8.17 6.70 -40.82 -0.27 7.90 16 38 H 0.10 2.73 6.49 -52.49 -0.34 2.39 16 39 H 0.09 1.75 8.03 -52.48 -0.42 1.33 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 42 H 0.07 0.83 6.68 -51.93 -0.35 0.49 16 43 H 0.08 0.98 7.55 -51.93 -0.39 0.59 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 49 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -27.03 370.96 -11.79 -38.82 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.29 Total: 9.77 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: -3.24 Total: -34.67 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: -0.40 Total: -29.93 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.35 Total: -6.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.10 Total: 16.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.03 -11.79 -38.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592195546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.619 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds