Wall clock time and date at job start Tue Mar 31 2020 10:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.51113 * 2 1 4 4 C 1.53097 * 109.51565 * 120.10018 * 2 1 3 5 5 N 1.47016 * 109.29232 * 177.22786 * 4 2 1 6 6 C 1.46905 * 110.99716 * 177.24916 * 5 4 2 7 7 C 1.50702 * 109.46926 * 66.05145 * 6 5 4 8 8 C 1.38636 * 119.75076 * 89.99790 * 7 6 5 9 9 C 1.37611 * 120.25151 * 180.02562 * 8 7 6 10 10 C 1.40722 * 119.74546 * 359.97438 * 9 8 7 11 11 C 1.41393 * 120.24478 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00196 * 335.04437 * 11 10 9 13 13 C 1.39943 * 119.99706 * 155.04512 * 11 10 9 14 14 N 1.30827 * 120.00209 * 334.23259 * 13 11 10 15 15 Si 1.86800 * 120.00120 * 154.23199 * 13 11 10 16 16 H 1.48509 * 109.46982 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47448 * 240.00124 * 15 13 11 18 18 H 1.48493 * 109.47269 * 119.99785 * 15 13 11 19 19 C 1.40719 * 119.50978 * 0.27869 * 10 9 8 20 20 C 1.37624 * 119.74119 * 359.42406 * 19 10 9 21 21 C 1.47069 * 110.72432 * 301.00477 * 5 4 2 22 22 C 1.52742 * 109.32195 * 57.92511 * 21 5 4 23 23 C 1.53576 * 110.01522 * 65.91539 * 22 21 5 24 24 C 1.54345 * 106.49867 * 119.05811 * 23 22 21 25 25 C 1.54921 * 104.20094 * 23.55988 * 24 23 22 26 26 C 1.53992 * 109.76186 * 183.26212 * 22 21 5 27 27 O 1.42614 * 110.26656 * 304.33519 * 22 21 5 28 28 H 1.09001 * 109.46802 * 299.89801 * 1 2 3 29 29 H 1.08996 * 109.47152 * 59.89721 * 1 2 3 30 30 H 1.08999 * 109.47096 * 179.89789 * 1 2 3 31 31 H 1.09009 * 109.49749 * 57.28649 * 4 2 1 32 32 H 1.08997 * 109.50186 * 297.17976 * 4 2 1 33 33 H 1.09000 * 109.47521 * 306.05194 * 6 5 4 34 34 H 1.08999 * 109.46593 * 186.04483 * 6 5 4 35 35 H 1.08002 * 119.87322 * 0.02562 * 8 7 6 36 36 H 1.07997 * 120.13362 * 179.97438 * 9 8 7 37 37 H 0.97000 * 119.99756 * 354.23951 * 14 13 11 38 38 H 1.08001 * 120.12862 * 179.70537 * 19 10 9 39 39 H 1.08004 * 119.87155 * 180.32363 * 20 19 10 40 40 H 1.09001 * 109.49395 * 177.88128 * 21 5 4 41 41 H 1.09000 * 109.49623 * 297.97499 * 21 5 4 42 42 H 1.09002 * 110.04978 * 238.31724 * 23 22 21 43 43 H 1.08998 * 110.05191 * 359.79892 * 23 22 21 44 44 H 1.09003 * 110.48548 * 264.88204 * 24 23 22 45 45 H 1.08997 * 110.48948 * 142.24241 * 24 23 22 46 46 H 1.08991 * 110.75412 * 203.89653 * 25 24 23 47 47 H 1.09003 * 110.74814 * 80.53425 * 25 24 23 48 48 H 1.09005 * 110.49834 * 335.92858 * 26 22 21 49 49 H 1.08998 * 110.50252 * 98.47249 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0415 -0.7237 1.2484 5 7 3.5101 -0.7792 1.2103 6 6 4.0448 -1.4096 2.4247 7 6 3.6322 -2.8586 2.4617 8 6 4.4450 -3.8204 1.8819 9 6 4.0780 -5.1463 1.9093 10 6 2.8728 -5.5245 2.5295 11 6 2.4857 -6.8840 2.5642 12 1 2.8526 -7.5693 1.8145 13 6 1.6270 -7.3415 3.5701 14 7 1.5752 -6.7185 4.7194 15 14 0.5548 -8.8417 3.2719 16 1 0.7990 -9.3604 1.9020 17 1 -0.8746 -8.4642 3.4112 18 1 0.8880 -9.8937 4.2656 19 6 2.0530 -4.5391 3.1101 20 6 2.4431 -3.2197 3.0762 21 6 3.9732 -1.4816 0.0041 22 6 3.4303 -0.7713 -1.2343 23 6 4.0467 0.6307 -1.3487 24 6 4.8169 0.6631 -2.6858 25 6 4.1396 -0.4366 -3.5413 26 6 3.8412 -1.5452 -2.5006 27 8 2.0089 -0.6767 -1.1662 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0018 31 1 1.6396 -1.7367 1.2720 32 1 1.7207 -0.1836 2.1392 33 1 3.6521 -0.8974 3.3031 34 1 5.1326 -1.3416 2.4204 35 1 5.3698 -3.5278 1.4068 36 1 4.7124 -5.8940 1.4566 37 1 2.1904 -5.9919 4.9053 38 1 1.1236 -4.8176 3.5845 39 1 1.8180 -2.4623 3.5258 40 1 5.0629 -1.4783 -0.0230 41 1 3.6124 -2.5101 0.0209 42 1 3.2603 1.3855 -1.3519 43 1 4.7310 0.8069 -0.5188 44 1 5.8691 0.4279 -2.5257 45 1 4.7112 1.6372 -3.1634 46 1 4.8204 -0.8018 -4.3101 47 1 3.2161 -0.0658 -3.9861 48 1 4.7341 -2.1410 -2.3109 49 1 3.0242 -2.1814 -2.8411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592195546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:56 Heat of formation + Delta-G solvation = -58.832971 kcal Electronic energy + Delta-G solvation = -27588.220013 eV Core-core repulsion = 24091.893677 eV Total energy + Delta-G solvation = -3496.326336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57783 -39.83812 -37.76642 -36.89126 -35.41211 -33.15372 -32.05845 -31.30315 -29.87757 -29.70339 -28.26322 -26.78079 -25.76134 -23.54287 -23.04277 -22.58129 -21.77348 -21.39287 -19.95470 -19.73172 -17.76030 -17.12696 -16.82354 -16.63389 -16.42046 -16.03050 -15.92000 -15.50447 -15.40203 -15.13683 -14.72359 -14.37511 -14.18937 -14.01137 -13.94500 -13.71624 -13.41212 -13.21076 -13.04945 -12.80436 -12.68664 -12.56490 -12.44853 -12.23190 -12.11202 -12.02812 -11.98911 -11.82975 -11.75020 -11.53301 -11.44744 -11.39945 -11.22116 -10.89123 -10.40705 -9.64367 -9.48676 -9.33513 -9.17334 -6.50610 0.82042 0.89537 1.45215 1.58374 1.74434 2.27658 2.57331 2.71909 2.97593 3.50226 3.64109 3.69208 3.84194 3.94021 4.08083 4.15206 4.21356 4.25637 4.26986 4.34795 4.43170 4.50040 4.54419 4.56257 4.64390 4.69883 4.74597 4.79447 4.81111 4.86427 4.91113 4.93121 4.99497 5.04340 5.08104 5.16680 5.19195 5.19585 5.21064 5.25890 5.37996 5.38522 5.48312 5.68408 5.74035 5.78580 5.89567 6.00796 6.12860 6.20751 6.36238 6.40891 6.75093 6.89022 7.98450 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.003553 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.318186 B = 7879.552390 C = 8008.943081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.090 3.910 3 H 0.076 0.924 4 C 0.022 3.978 5 N -0.515 5.515 6 C 0.116 3.884 7 C -0.240 4.240 8 C -0.063 4.063 9 C -0.248 4.248 10 C 0.072 3.928 11 C -0.562 4.562 12 H 0.067 0.933 13 C 0.005 3.995 14 N -0.817 5.817 15 Si 1.119 2.881 16 H -0.266 1.266 17 H -0.266 1.266 18 H -0.263 1.263 19 C -0.240 4.240 20 C -0.070 4.070 21 C 0.036 3.964 22 C 0.115 3.885 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.117 4.117 27 O -0.391 6.391 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.283 0.717 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 14.897 -10.773 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.094 0.906 4 C -0.107 4.107 5 N -0.237 5.237 6 C -0.011 4.011 7 C -0.243 4.243 8 C -0.082 4.082 9 C -0.268 4.268 10 C 0.069 3.931 11 C -0.591 4.591 12 H 0.085 0.915 13 C -0.211 4.211 14 N -0.441 5.441 15 Si 0.936 3.064 16 H -0.190 1.190 17 H -0.191 1.191 18 H -0.188 1.188 19 C -0.260 4.260 20 C -0.088 4.088 21 C -0.092 4.092 22 C 0.076 3.924 23 C -0.169 4.169 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.154 4.154 27 O -0.311 6.311 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.759 14.435 -10.184 17.753 hybrid contribution 0.938 -0.403 0.016 1.021 sum 2.696 14.032 -10.168 17.537 Atomic orbital electron populations 1.21751 0.92094 1.02262 1.03707 1.22230 0.95310 0.95612 0.83601 0.90600 1.22822 0.88741 0.99358 0.99750 1.62829 1.08354 1.50364 1.02114 1.20926 0.99974 0.87763 0.92403 1.20062 0.98209 0.96935 1.09072 1.20714 0.98049 0.92199 0.97250 1.21125 0.98015 0.96224 1.11435 1.17981 0.90742 0.93733 0.90599 1.20797 1.29066 0.95386 1.13832 0.91498 1.28405 0.96901 1.04893 0.90906 1.70519 1.32751 1.18979 1.21804 0.82998 0.74951 0.71153 0.77339 1.19028 1.19067 1.18797 1.21081 1.00316 0.93681 1.10919 1.20695 0.96130 0.94502 0.97513 1.22722 1.00525 0.95614 0.90361 1.22085 0.80411 0.95814 0.94101 1.22574 1.00060 0.95211 0.99020 1.22359 0.99414 0.99341 0.94414 1.22464 1.00773 0.94975 0.97041 1.22382 1.01111 0.98156 0.93797 1.87934 1.21502 1.78711 1.42985 0.89157 0.90760 0.93725 0.96165 0.89217 0.90240 0.89762 0.86701 0.89046 0.90468 0.89908 0.87718 0.89437 0.96171 0.91523 0.90559 0.90713 0.90388 0.89883 0.91678 0.89911 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.57 71.98 0.69 -2.53 16 2 C 0.09 2.38 3.10 30.63 0.09 2.48 16 3 H 0.08 1.81 6.67 -2.38 -0.02 1.79 16 4 C 0.02 0.66 4.38 86.31 0.38 1.03 16 5 N -0.51 -15.15 4.60 -900.33 -4.14 -19.29 16 6 C 0.12 3.66 5.57 85.56 0.48 4.13 16 7 C -0.24 -9.69 4.04 -19.67 -0.08 -9.77 16 8 C -0.06 -2.71 7.87 22.22 0.17 -2.53 16 9 C -0.25 -12.44 9.80 22.73 0.22 -12.21 16 10 C 0.07 3.98 5.30 -21.29 -0.11 3.87 16 11 C -0.56 -31.61 8.99 23.46 0.21 -31.40 16 12 H 0.07 3.71 7.96 -2.91 -0.02 3.69 16 13 C 0.00 0.26 4.93 85.26 0.42 0.68 16 14 N -0.82 -45.34 12.31 21.83 0.27 -45.08 16 15 Si 1.12 44.76 30.00 68.60 2.06 46.81 16 16 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 17 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 19 C -0.24 -12.73 7.96 22.73 0.18 -12.55 16 20 C -0.07 -3.13 8.00 22.22 0.18 -2.96 16 21 C 0.04 1.09 3.16 86.19 0.27 1.36 16 22 C 0.12 3.07 0.96 -10.35 -0.01 3.06 16 23 C -0.13 -2.81 5.49 31.24 0.17 -2.63 16 24 C -0.12 -1.99 6.84 31.71 0.22 -1.78 16 25 C -0.12 -2.12 6.91 31.92 0.22 -1.90 16 26 C -0.12 -2.81 6.08 31.60 0.19 -2.62 16 27 O -0.39 -11.90 9.84 -148.98 -1.47 -13.37 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.02 0.76 6.35 -2.38 -0.02 0.75 16 32 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 33 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 34 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 35 H 0.12 4.20 8.01 -2.91 -0.02 4.17 16 36 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 37 H 0.28 16.35 6.70 -92.71 -0.62 15.73 16 38 H 0.08 4.65 6.49 -2.91 -0.02 4.63 16 39 H 0.10 4.24 8.03 -2.91 -0.02 4.22 16 40 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.02 0.76 6.16 -2.39 -0.01 0.75 16 42 H 0.07 1.45 6.68 -2.39 -0.02 1.43 16 43 H 0.08 1.67 7.55 -2.39 -0.02 1.65 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 1.89 7.84 -2.38 -0.02 1.87 16 49 H 0.06 1.63 8.06 -2.39 -0.02 1.61 16 Total: -1.00 -61.74 370.96 1.68 -60.06 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 1.06 Total: 37.11 kcal Atomic # 6 Polarization: -70.15 SS G_CDS: 3.90 Total: -66.25 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -3.87 Total: -64.37 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.47 Total: -13.37 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.06 Total: 46.81 kcal Total: -61.74 1.68 -60.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592195546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.227 kcal (2) G-P(sol) polarization free energy of solvation -61.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds