Wall clock time and date at job start Tue Mar 31 2020 11:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99770 * 2 1 3 5 5 C 1.50701 * 109.47011 * 65.00120 * 4 2 1 6 6 O 1.21280 * 119.99974 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99782 * 180.02562 * 5 4 2 8 8 C 1.46926 * 120.63492 * 359.71949 * 7 5 4 9 9 C 1.53620 * 108.54760 * 126.36978 * 8 7 5 10 10 C 1.53035 * 109.24265 * 54.85412 * 9 8 7 11 11 C 1.53003 * 109.46227 * 178.49177 * 10 9 8 12 12 C 1.50704 * 109.46942 * 295.07271 * 11 10 9 13 13 H 1.07997 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99721 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99712 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47233 * 60.00469 * 16 14 12 18 18 H 1.48505 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47295 * 300.00051 * 16 14 12 20 20 C 1.53037 * 109.54022 * 298.51442 * 10 9 8 21 21 C 1.46930 * 120.63231 * 179.97438 * 7 5 4 22 22 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 23 23 C 1.38229 * 120.00050 * 59.73240 * 22 2 1 24 24 C 1.38239 * 120.00190 * 179.78690 * 23 22 2 25 25 C 1.38238 * 119.99635 * 0.43836 * 24 23 22 26 26 C 1.38237 * 119.99674 * 359.81293 * 25 24 23 27 27 C 1.38225 * 120.00273 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47196 * 184.99837 * 4 2 1 32 32 H 1.09001 * 109.47630 * 304.99932 * 4 2 1 33 33 H 1.09006 * 109.58875 * 246.20354 * 8 7 5 34 34 H 1.09006 * 109.58465 * 6.62335 * 8 7 5 35 35 H 1.09000 * 109.63166 * 294.86746 * 9 8 7 36 36 H 1.08999 * 109.45972 * 174.74466 * 9 8 7 37 37 H 1.09008 * 109.44882 * 58.52996 * 10 9 8 38 38 H 1.08999 * 109.46771 * 55.06733 * 11 10 9 39 39 H 1.09000 * 109.47297 * 175.07070 * 11 10 9 40 40 H 0.96998 * 119.99877 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.49919 * 301.41176 * 20 10 9 42 42 H 1.09000 * 109.52390 * 181.33295 * 20 10 9 43 43 H 1.09009 * 109.58085 * 353.37164 * 21 7 5 44 44 H 1.08998 * 109.58641 * 113.64960 * 21 7 5 45 45 H 1.08001 * 120.00196 * 359.97438 * 23 22 2 46 46 H 1.08000 * 120.00138 * 180.27454 * 24 23 22 47 47 H 1.08001 * 119.99700 * 179.83733 * 25 24 23 48 48 H 1.08003 * 119.99553 * 180.02562 * 26 25 24 49 49 H 1.08008 * 120.00146 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 6 2.7523 -1.6353 -3.8532 9 6 1.9963 -2.5609 -4.8183 10 6 1.7365 -1.8175 -6.1305 11 6 1.0167 -2.7474 -7.1094 12 6 1.9242 -3.8945 -7.4721 13 1 2.9154 -3.9541 -7.0472 14 6 1.4891 -4.8679 -8.3462 15 7 0.2820 -4.7956 -8.8631 16 14 2.6143 -6.2895 -8.7963 17 1 2.9736 -7.0442 -7.5690 18 1 1.9157 -7.1921 -9.7463 19 1 3.8483 -5.7620 -9.4321 20 6 0.8646 -0.5894 -5.8591 21 6 1.6026 0.3554 -4.9061 22 6 2.0323 -0.7104 1.2306 23 6 1.6938 -2.0321 1.4522 24 6 2.1582 -2.6851 2.5787 25 6 2.9536 -2.0135 3.4882 26 6 3.2878 -0.6901 3.2691 27 6 2.8271 -0.0386 2.1404 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7995 -1.2056 32 1 1.6055 -1.7199 -1.2951 33 1 3.7387 -1.4081 -4.2577 34 1 2.8562 -2.1223 -2.8835 35 1 1.0461 -2.8564 -4.3734 36 1 2.5973 -3.4485 -5.0158 37 1 2.6859 -1.5005 -6.5622 38 1 0.1106 -3.1343 -6.6433 39 1 0.7537 -2.1932 -8.0104 40 1 -0.0239 -5.4802 -9.4784 41 1 -0.0749 -0.9035 -5.4044 42 1 0.6600 -0.0733 -6.7971 43 1 0.9475 1.1822 -4.6313 44 1 2.4967 0.7440 -5.3935 45 1 1.0690 -2.5557 0.7437 46 1 1.8973 -3.7191 2.7496 47 1 3.3142 -2.5228 4.3696 48 1 3.9096 -0.1655 3.9795 49 1 3.0886 0.9952 1.9691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592821114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:00 Heat of formation + Delta-G solvation = -41.830456 kcal Electronic energy + Delta-G solvation = -26102.658686 eV Core-core repulsion = 22607.069634 eV Total energy + Delta-G solvation = -3495.589052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.36507 -39.41089 -37.47963 -35.12828 -34.02231 -32.20837 -31.13151 -30.97249 -29.85748 -28.45064 -27.42263 -24.64640 -23.71599 -22.86349 -22.71502 -21.79518 -20.47144 -19.55335 -18.53659 -17.43488 -16.62797 -16.30946 -15.95051 -15.41553 -15.24859 -15.03199 -14.56222 -14.07102 -13.98533 -13.76149 -13.55792 -13.49725 -13.35762 -12.92840 -12.81010 -12.73794 -12.48906 -12.26795 -11.91864 -11.75020 -11.50615 -11.27689 -11.20411 -11.01489 -10.98789 -10.83620 -10.74850 -10.70405 -10.46215 -10.14098 -9.74358 -9.51360 -9.27830 -9.12644 -8.99993 -8.89715 -8.38106 -8.33301 -6.02079 -4.04383 1.14647 1.19421 2.73944 3.15405 3.30055 3.35536 3.36821 3.58804 4.39060 4.42932 4.55333 4.77524 4.81167 4.87185 4.93168 4.96970 5.12611 5.29374 5.32139 5.32573 5.34038 5.40191 5.47636 5.50591 5.54226 5.62510 5.66893 5.74234 5.80431 5.82583 5.93007 5.98689 6.04272 6.06342 6.23007 6.30221 6.33989 6.36960 6.38021 6.48454 6.51497 6.67950 6.80054 6.94454 6.97130 7.08543 7.58620 7.64319 7.79059 7.97450 8.30547 8.39566 9.01963 9.59472 11.09122 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.002717 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.505991 B =10303.590704 C =11461.937081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 H 0.085 0.915 4 C -0.133 4.133 5 C 0.514 3.486 6 O -0.549 6.549 7 N -0.606 5.606 8 C 0.102 3.898 9 C -0.119 4.119 10 C -0.081 4.081 11 C 0.028 3.972 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.129 4.129 21 C 0.112 3.888 22 C -0.073 4.073 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.117 4.117 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 7.861 21.673 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 H 0.103 0.897 4 C -0.173 4.173 5 C 0.303 3.697 6 O -0.428 6.428 7 N -0.338 5.338 8 C -0.021 4.021 9 C -0.157 4.157 10 C -0.099 4.099 11 C -0.009 4.009 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.167 4.167 21 C -0.010 4.010 22 C -0.074 4.074 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.135 4.135 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.701 8.308 21.595 23.611 hybrid contribution 0.664 -1.082 -0.393 1.329 sum 5.365 7.226 21.203 23.034 Atomic orbital electron populations 1.21963 0.93616 1.01820 1.03193 1.19890 0.96826 0.98994 0.89659 0.89684 1.21774 1.02852 1.00354 0.92278 1.20564 0.79126 0.85521 0.84493 1.90626 1.40758 1.25101 1.86318 1.48204 1.54758 1.25035 1.05850 1.22050 0.94890 0.84449 1.00677 1.21973 1.00412 0.98174 0.95099 1.21189 0.98586 0.94412 0.95741 1.19119 0.95409 0.93230 0.93150 1.21196 1.00422 1.07664 1.26286 0.92661 1.25024 0.95048 0.98164 0.96219 1.69951 1.17335 1.34862 1.31304 0.86707 0.80853 0.82397 0.78321 1.20266 1.21364 1.20302 1.22010 0.99212 0.97050 0.98428 1.21646 0.99559 0.94977 0.84853 1.19943 0.97053 0.94237 0.96122 1.21065 1.00009 0.94384 0.97734 1.21168 0.97963 0.99903 0.94607 1.21141 0.99007 0.94927 0.99496 1.21131 1.00107 0.94989 0.97581 1.21098 0.98030 0.99926 0.94458 0.92910 0.90094 0.93067 0.88967 0.88685 0.91495 0.90428 0.92262 0.89737 0.92378 0.96666 0.96613 0.92969 0.92117 0.91191 0.89710 0.91963 0.85967 0.86110 0.86328 0.86244 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.74 37.16 0.32 -1.33 16 2 C -0.03 -0.37 2.21 -91.77 -0.20 -0.57 16 3 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 4 C -0.13 -1.42 3.26 -27.88 -0.09 -1.51 16 5 C 0.51 7.18 7.42 -10.99 -0.08 7.10 16 6 O -0.55 -9.11 13.38 5.56 0.07 -9.04 16 7 N -0.61 -8.55 2.97 -172.52 -0.51 -9.06 16 8 C 0.10 1.33 6.37 -3.49 -0.02 1.31 16 9 C -0.12 -1.97 5.21 -26.39 -0.14 -2.11 16 10 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 11 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 12 C -0.52 -13.84 8.39 -34.44 -0.29 -14.13 16 13 H 0.06 1.41 7.06 -52.49 -0.37 1.04 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 16 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 C -0.13 -2.14 5.36 -26.63 -0.14 -2.29 16 21 C 0.11 1.65 6.43 -3.73 -0.02 1.62 16 22 C -0.07 -0.72 4.78 -104.62 -0.50 -1.22 16 23 C -0.11 -1.07 8.76 -39.58 -0.35 -1.42 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 25 C -0.13 -1.05 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 27 C -0.12 -1.07 9.67 -39.59 -0.38 -1.45 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 30 H 0.05 0.53 7.37 -51.93 -0.38 0.15 16 31 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 32 H 0.09 0.94 7.15 -51.93 -0.37 0.57 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.83 5.93 -51.93 -0.31 0.52 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 37 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.29 7.01 -51.92 -0.36 0.92 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.12 1.05 7.16 -52.49 -0.38 0.68 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 49 H 0.12 0.95 7.95 -52.48 -0.42 0.54 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -30.71 383.10 -10.73 -41.44 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.28 Total: 0.45 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.50 Total: -19.93 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.22 Total: -34.73 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.71 -10.73 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592821114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.392 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds