Wall clock time and date at job start Tue Mar 31 2020 11:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99770 * 2 1 3 5 5 C 1.50701 * 109.47011 * 65.00120 * 4 2 1 6 6 O 1.21280 * 119.99974 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99782 * 180.02562 * 5 4 2 8 8 C 1.46926 * 120.63492 * 359.71949 * 7 5 4 9 9 C 1.53620 * 108.54760 * 126.36978 * 8 7 5 10 10 C 1.53035 * 109.24265 * 54.85412 * 9 8 7 11 11 C 1.53003 * 109.46227 * 178.49177 * 10 9 8 12 12 C 1.50704 * 109.46942 * 295.07271 * 11 10 9 13 13 H 1.07997 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99721 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99712 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47233 * 60.00469 * 16 14 12 18 18 H 1.48505 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47295 * 300.00051 * 16 14 12 20 20 C 1.53037 * 109.54022 * 298.51442 * 10 9 8 21 21 C 1.46930 * 120.63231 * 179.97438 * 7 5 4 22 22 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 23 23 C 1.38229 * 120.00050 * 59.73240 * 22 2 1 24 24 C 1.38239 * 120.00190 * 179.78690 * 23 22 2 25 25 C 1.38238 * 119.99635 * 0.43836 * 24 23 22 26 26 C 1.38237 * 119.99674 * 359.81293 * 25 24 23 27 27 C 1.38225 * 120.00273 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47196 * 184.99837 * 4 2 1 32 32 H 1.09001 * 109.47630 * 304.99932 * 4 2 1 33 33 H 1.09006 * 109.58875 * 246.20354 * 8 7 5 34 34 H 1.09006 * 109.58465 * 6.62335 * 8 7 5 35 35 H 1.09000 * 109.63166 * 294.86746 * 9 8 7 36 36 H 1.08999 * 109.45972 * 174.74466 * 9 8 7 37 37 H 1.09008 * 109.44882 * 58.52996 * 10 9 8 38 38 H 1.08999 * 109.46771 * 55.06733 * 11 10 9 39 39 H 1.09000 * 109.47297 * 175.07070 * 11 10 9 40 40 H 0.96998 * 119.99877 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.49919 * 301.41176 * 20 10 9 42 42 H 1.09000 * 109.52390 * 181.33295 * 20 10 9 43 43 H 1.09009 * 109.58085 * 353.37164 * 21 7 5 44 44 H 1.08998 * 109.58641 * 113.64960 * 21 7 5 45 45 H 1.08001 * 120.00196 * 359.97438 * 23 22 2 46 46 H 1.08000 * 120.00138 * 180.27454 * 24 23 22 47 47 H 1.08001 * 119.99700 * 179.83733 * 25 24 23 48 48 H 1.08003 * 119.99553 * 180.02562 * 26 25 24 49 49 H 1.08008 * 120.00146 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 6 2.7523 -1.6353 -3.8532 9 6 1.9963 -2.5609 -4.8183 10 6 1.7365 -1.8175 -6.1305 11 6 1.0167 -2.7474 -7.1094 12 6 1.9242 -3.8945 -7.4721 13 1 2.9154 -3.9541 -7.0472 14 6 1.4891 -4.8679 -8.3462 15 7 0.2820 -4.7956 -8.8631 16 14 2.6143 -6.2895 -8.7963 17 1 2.9736 -7.0442 -7.5690 18 1 1.9157 -7.1921 -9.7463 19 1 3.8483 -5.7620 -9.4321 20 6 0.8646 -0.5894 -5.8591 21 6 1.6026 0.3554 -4.9061 22 6 2.0323 -0.7104 1.2306 23 6 1.6938 -2.0321 1.4522 24 6 2.1582 -2.6851 2.5787 25 6 2.9536 -2.0135 3.4882 26 6 3.2878 -0.6901 3.2691 27 6 2.8271 -0.0386 2.1404 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7995 -1.2056 32 1 1.6055 -1.7199 -1.2951 33 1 3.7387 -1.4081 -4.2577 34 1 2.8562 -2.1223 -2.8835 35 1 1.0461 -2.8564 -4.3734 36 1 2.5973 -3.4485 -5.0158 37 1 2.6859 -1.5005 -6.5622 38 1 0.1106 -3.1343 -6.6433 39 1 0.7537 -2.1932 -8.0104 40 1 -0.0239 -5.4802 -9.4784 41 1 -0.0749 -0.9035 -5.4044 42 1 0.6600 -0.0733 -6.7971 43 1 0.9475 1.1822 -4.6313 44 1 2.4967 0.7440 -5.3935 45 1 1.0690 -2.5557 0.7437 46 1 1.8973 -3.7191 2.7496 47 1 3.3142 -2.5228 4.3696 48 1 3.9096 -0.1655 3.9795 49 1 3.0886 0.9952 1.9691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592821114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:56 Heat of formation + Delta-G solvation = -55.872337 kcal Electronic energy + Delta-G solvation = -26103.267587 eV Core-core repulsion = 22607.069634 eV Total energy + Delta-G solvation = -3496.197953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.40801 -40.19274 -38.76088 -35.99514 -35.65152 -34.00684 -32.22366 -31.73781 -30.66248 -29.91057 -28.64656 -26.24207 -24.63605 -24.08956 -23.49771 -23.17011 -21.54603 -20.75107 -19.70290 -18.43977 -18.32347 -17.42095 -16.94047 -16.53698 -16.48270 -16.01469 -15.80484 -15.27070 -15.06885 -14.85369 -14.73430 -14.49683 -14.31239 -14.18125 -13.99772 -13.95451 -13.59648 -13.35723 -13.25749 -12.95867 -12.74451 -12.70985 -12.47733 -12.30611 -12.20379 -12.15194 -12.07122 -11.76908 -11.69745 -11.53019 -11.33550 -11.06499 -10.84181 -10.63100 -10.50265 -9.75844 -9.56955 -9.54975 -8.15276 -6.25033 0.49723 0.56219 1.42640 1.44906 1.52334 1.65891 2.07631 2.43774 2.93799 3.18427 3.48285 3.78707 3.90818 3.98037 4.06669 4.10226 4.17928 4.21735 4.22991 4.26126 4.36395 4.42222 4.47821 4.59688 4.65865 4.66658 4.70106 4.71175 4.84014 4.85153 4.90983 4.98182 5.01781 5.13121 5.17662 5.20188 5.26422 5.32444 5.34602 5.38002 5.42399 5.56095 5.63013 5.65551 5.69433 5.80049 5.83102 5.90556 6.18197 6.29694 6.49258 6.91892 7.21244 7.43851 8.96550 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.002717 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.505991 B =10303.590704 C =11461.937081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.511 3.489 6 O -0.579 6.579 7 N -0.610 5.610 8 C 0.111 3.889 9 C -0.114 4.114 10 C -0.073 4.073 11 C 0.033 3.967 12 C -0.526 4.526 13 H 0.068 0.932 14 C -0.004 4.004 15 N -0.938 5.938 16 Si 0.960 3.040 17 H -0.263 1.263 18 H -0.290 1.290 19 H -0.267 1.267 20 C -0.121 4.121 21 C 0.119 3.881 22 C -0.083 4.083 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.125 4.125 27 C -0.128 4.128 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.062 0.938 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.126 0.874 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.645 7.147 23.730 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 H 0.093 0.907 4 C -0.166 4.166 5 C 0.302 3.698 6 O -0.459 6.459 7 N -0.342 5.342 8 C -0.011 4.011 9 C -0.152 4.152 10 C -0.092 4.092 11 C -0.005 4.005 12 C -0.564 4.564 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.579 5.579 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.159 4.159 21 C -0.004 4.004 22 C -0.083 4.083 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.143 4.143 27 C -0.146 4.146 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.144 0.856 46 H 0.154 0.846 47 H 0.157 0.843 48 H 0.156 0.844 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.207 7.597 23.669 25.882 hybrid contribution -0.175 -0.833 -1.020 1.329 sum 7.033 6.764 22.649 24.661 Atomic orbital electron populations 1.21899 0.94439 1.01849 1.02047 1.19772 0.96073 0.98630 0.90218 0.90676 1.21801 1.04120 1.00183 0.90471 1.21142 0.78273 0.85308 0.85122 1.90622 1.41971 1.26620 1.86730 1.48295 1.54877 1.25288 1.05744 1.22058 0.94493 0.83240 1.01303 1.21862 1.00271 0.98472 0.94595 1.21036 0.98181 0.94249 0.95707 1.19019 0.94635 0.93727 0.93072 1.21643 1.01051 1.07949 1.25780 0.91358 1.25982 0.96522 1.01295 0.96338 1.70110 1.19487 1.36033 1.32298 0.85570 0.78794 0.78783 0.78334 1.18816 1.21606 1.19218 1.21889 0.98407 0.96633 0.99013 1.21508 0.99851 0.94190 0.84825 1.19865 0.97884 0.94518 0.96014 1.21194 1.00346 0.94360 0.98344 1.21430 0.97865 1.00769 0.94400 1.21461 0.98500 0.95024 1.00014 1.21413 1.00050 0.95269 0.97590 1.21288 0.98129 1.00456 0.94766 0.92614 0.92586 0.92430 0.86947 0.87480 0.89797 0.87299 0.93516 0.90588 0.91950 0.99793 0.99781 0.93081 0.93665 0.91316 0.90218 0.90324 0.85569 0.84598 0.84338 0.84350 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.74 71.98 0.63 -2.54 16 2 C -0.03 -0.56 2.21 -11.54 -0.03 -0.58 16 3 H 0.07 1.63 7.69 -2.39 -0.02 1.61 16 4 C -0.13 -2.42 3.26 29.85 0.10 -2.33 16 5 C 0.51 13.55 7.42 87.66 0.65 14.20 16 6 O -0.58 -19.01 13.38 -3.03 -0.04 -19.05 16 7 N -0.61 -16.13 2.97 -818.12 -2.43 -18.56 16 8 C 0.11 2.59 6.37 86.51 0.55 3.14 16 9 C -0.11 -3.67 5.21 30.81 0.16 -3.51 16 10 C -0.07 -2.77 2.10 -10.77 -0.02 -2.80 16 11 C 0.03 1.66 4.45 29.85 0.13 1.79 16 12 C -0.53 -28.38 8.39 25.60 0.21 -28.17 16 13 H 0.07 3.43 7.06 -2.91 -0.02 3.41 16 14 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 15 N -0.94 -56.86 13.29 21.45 0.28 -56.57 16 16 Si 0.96 43.06 29.54 68.60 2.03 45.08 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 C -0.12 -4.08 5.36 30.66 0.16 -3.92 16 21 C 0.12 3.39 6.43 86.35 0.55 3.94 16 22 C -0.08 -1.48 4.78 -19.87 -0.09 -1.57 16 23 C -0.12 -2.09 8.76 22.27 0.20 -1.89 16 24 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 25 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 26 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 27 C -0.13 -2.11 9.67 22.27 0.22 -1.90 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.51 5.95 -2.39 -0.01 1.50 16 30 H 0.06 1.15 7.37 -2.38 -0.02 1.13 16 31 H 0.11 1.75 7.93 -2.39 -0.02 1.73 16 32 H 0.11 1.84 7.15 -2.39 -0.02 1.82 16 33 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.11 1.90 5.93 -2.38 -0.01 1.89 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 2.59 6.91 -2.39 -0.02 2.57 16 37 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 38 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.08 2.39 7.01 -2.38 -0.02 2.37 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.13 1.93 7.16 -2.91 -0.02 1.91 16 46 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 49 H 0.13 1.82 7.95 -2.91 -0.02 1.80 16 Total: -1.00 -67.88 383.10 5.31 -62.58 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.91 Total: 17.24 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.56 Total: -30.72 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -2.14 Total: -75.13 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.04 Total: -19.05 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -67.88 5.31 -62.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592821114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.704 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds