Wall clock time and date at job start Tue Mar 31 2020 11:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99891 * 2 1 4 4 C 1.50702 * 109.46664 * 269.99725 * 3 2 1 5 5 H 1.07997 * 120.00536 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99556 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99951 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00343 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.46783 * 90.00348 * 8 6 4 10 10 H 1.48493 * 109.47403 * 210.00537 * 8 6 4 11 11 H 1.48502 * 109.46821 * 330.00739 * 8 6 4 12 12 C 1.34779 * 119.99935 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99696 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00209 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.46877 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.46483 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46689 * 180.02562 * 16 15 14 18 18 C 1.38263 * 120.11053 * 269.72339 * 17 16 15 19 19 C 1.37935 * 119.76651 * 180.41560 * 18 17 16 20 20 C 1.38900 * 120.54344 * 0.02562 * 19 18 17 21 21 C 1.37658 * 119.69138 * 359.70441 * 20 19 18 22 22 C 1.37935 * 120.11215 * 90.00262 * 17 16 15 23 23 C 1.50634 * 122.56331 * 180.79939 * 21 20 19 24 24 C 1.52729 * 110.59432 * 341.99912 * 23 21 20 25 25 C 1.53324 * 108.41009 * 51.10413 * 24 23 21 26 26 C 1.50639 * 117.75329 * 179.38690 * 20 19 18 27 27 H 1.09000 * 109.47526 * 270.00012 * 1 2 3 28 28 H 1.09000 * 109.46994 * 30.00722 * 1 2 3 29 29 H 1.09009 * 109.47138 * 150.00121 * 1 2 3 30 30 H 1.08993 * 109.46896 * 29.99675 * 3 2 1 31 31 H 1.08998 * 109.47302 * 150.00019 * 3 2 1 32 32 H 0.97003 * 120.00024 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46807 * 59.99879 * 14 12 2 34 34 H 1.09002 * 109.47096 * 300.00049 * 14 12 2 35 35 H 1.09001 * 109.47045 * 60.00950 * 15 14 12 36 36 H 1.08990 * 109.47355 * 300.00330 * 15 14 12 37 37 H 1.08997 * 109.47375 * 60.00577 * 16 15 14 38 38 H 1.09002 * 109.47313 * 299.99990 * 16 15 14 39 39 H 1.07996 * 120.11747 * 0.39549 * 18 17 16 40 40 H 1.08007 * 119.72876 * 179.97438 * 19 18 17 41 41 H 1.07999 * 119.72461 * 359.73672 * 22 17 16 42 42 H 1.08997 * 109.25147 * 102.28705 * 23 21 20 43 43 H 1.09001 * 109.25257 * 221.71412 * 23 21 20 44 44 H 1.08994 * 109.67716 * 291.37373 * 24 23 21 45 45 H 1.09000 * 109.70613 * 170.84423 * 24 23 21 46 46 H 1.09000 * 109.67889 * 170.47084 * 25 24 23 47 47 H 1.08994 * 109.68330 * 49.91891 * 25 24 23 48 48 H 1.08992 * 109.25427 * 282.51168 * 26 20 19 49 49 H 1.09001 * 109.25420 * 41.94672 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3456 3.2572 -2.9128 8 14 3.7338 3.9288 -0.2530 9 1 5.1069 3.5069 0.1236 10 1 3.7496 5.3553 -0.6649 11 1 2.8273 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4724 0.0017 15 6 2.3797 -3.6352 0.0014 16 6 1.6146 -4.9602 0.0033 17 6 2.5940 -6.1057 0.0037 18 6 3.0395 -6.6378 -1.1922 19 6 3.9293 -7.6918 -1.1835 20 6 4.3815 -8.2239 0.0172 21 6 3.9423 -7.6905 1.2078 22 6 3.0445 -6.6306 1.1970 23 6 4.4039 -8.2053 2.5461 24 6 5.0140 -9.5983 2.4045 25 6 6.0639 -9.5559 1.2879 26 6 5.3413 -9.3832 -0.0466 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8901 -0.5139 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1385 0.5138 32 1 3.8225 4.0832 -3.0900 33 1 0.7584 -2.5307 -0.8881 34 1 0.7591 -2.5295 0.8920 35 1 3.0069 -3.5771 0.8910 36 1 3.0057 -3.5778 -0.8889 37 1 0.9870 -5.0187 -0.8860 38 1 0.9889 -5.0173 0.8940 39 1 2.6918 -6.2299 -2.1298 40 1 4.2766 -8.1072 -2.1180 41 1 2.6958 -6.2144 2.1306 42 1 5.1516 -7.5253 2.9543 43 1 3.5531 -8.2530 3.2257 44 1 4.2347 -10.3159 2.1485 45 1 5.4872 -9.8893 3.3423 46 1 6.6300 -10.4873 1.2809 47 1 6.7395 -8.7163 1.4509 48 1 4.7895 -10.2944 -0.2772 49 1 6.0750 -9.1995 -0.8315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593418601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:44 Heat of formation + Delta-G solvation = -45.697810 kcal Electronic energy + Delta-G solvation = -25270.962164 eV Core-core repulsion = 21775.205411 eV Total energy + Delta-G solvation = -3495.756753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.25409 -39.07534 -36.89582 -34.97614 -34.21015 -32.68573 -32.47188 -30.76646 -29.31610 -28.52871 -26.74374 -25.71059 -23.82129 -23.10750 -22.42176 -21.87705 -20.98754 -19.23326 -18.32172 -16.94591 -16.47629 -16.20201 -15.89249 -15.53610 -15.29626 -15.10943 -14.64265 -14.18362 -14.14097 -14.04349 -13.59653 -13.46648 -13.05783 -12.86501 -12.74316 -12.51822 -12.41422 -12.28688 -12.06856 -11.95075 -11.77484 -11.57652 -11.40815 -11.21276 -11.16000 -11.10514 -10.86072 -10.68285 -10.55329 -10.48855 -10.42894 -10.12537 -9.52475 -8.95231 -8.78070 -8.57296 -8.46022 -7.66250 -6.07143 -4.05624 1.27320 1.31683 3.30385 3.36363 3.38180 3.41551 3.60865 3.92593 4.38054 4.41128 4.43188 4.59380 4.74121 4.82737 4.86540 4.92699 5.04066 5.16095 5.20520 5.25232 5.26376 5.27360 5.34038 5.38691 5.48486 5.54622 5.57343 5.65086 5.67561 5.71400 5.72569 5.77479 5.77578 5.85893 5.87830 5.97463 6.02998 6.10289 6.18273 6.27491 6.40222 6.50877 6.55575 6.62744 6.72889 6.96493 6.97742 7.37856 7.63299 8.29808 8.49307 8.95201 9.04278 9.53391 11.06304 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002206 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.497260 B =12690.419303 C =12953.983712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.215 3.785 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.504 3.496 13 O -0.542 6.542 14 C -0.138 4.138 15 C -0.097 4.097 16 C -0.081 4.081 17 C -0.075 4.075 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.076 4.076 22 C -0.118 4.118 23 C -0.081 4.081 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.079 4.079 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -26.223 9.642 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.333 5.333 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.291 3.709 13 O -0.420 6.420 14 C -0.178 4.178 15 C -0.135 4.135 16 C -0.118 4.118 17 C -0.075 4.075 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.086 4.086 21 C -0.076 4.076 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.116 4.116 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.544 -26.044 9.535 27.851 hybrid contribution 0.201 0.847 0.405 0.960 sum -2.344 -25.197 9.939 27.188 Atomic orbital electron populations 1.21649 0.81026 1.02967 1.00343 1.47870 1.06246 1.07234 1.71991 1.19648 0.92458 0.80215 0.98303 1.21337 1.36870 1.07086 0.91304 0.90826 1.24875 0.95270 0.97389 0.95601 1.69901 1.41559 1.23573 1.18647 0.86833 0.80130 0.79697 0.82923 1.19909 1.21073 1.19090 1.20447 0.88154 0.85222 0.77070 1.90666 1.14054 1.87310 1.49926 1.21700 0.99344 0.93274 1.03501 1.21297 0.97341 0.90829 1.03986 1.20660 0.96194 0.92203 1.02745 1.19818 0.98014 0.96629 0.93087 1.20994 0.98060 0.96641 0.97794 1.21115 0.98111 0.97102 0.97347 1.19538 0.98712 0.97852 0.92498 1.19545 0.97315 0.96346 0.94402 1.21030 0.98240 0.96553 0.97733 1.20465 1.00701 0.96660 0.93969 1.21535 0.98515 0.96804 0.98786 1.21550 0.97769 1.01979 0.94511 1.20445 0.96862 0.96121 0.98172 0.93760 0.90690 0.92081 0.95335 0.94627 0.92588 0.89369 0.89685 0.91241 0.90960 0.90941 0.91101 0.86023 0.86363 0.86289 0.90648 0.90913 0.91730 0.91563 0.91589 0.91543 0.90935 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.61 2.86 -182.95 -0.52 -13.14 16 3 C 0.21 5.38 4.23 -5.19 -0.02 5.35 16 4 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 5 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 8 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 12 C 0.50 10.39 7.67 -10.98 -0.08 10.30 16 13 O -0.54 -13.65 15.56 5.55 0.09 -13.56 16 14 C -0.14 -1.96 4.25 -27.88 -0.12 -2.08 16 15 C -0.10 -1.34 4.49 -26.73 -0.12 -1.46 16 16 C -0.08 -0.86 5.35 -27.88 -0.15 -1.01 16 17 C -0.08 -0.87 5.13 -104.72 -0.54 -1.41 16 18 C -0.12 -1.33 9.71 -39.68 -0.39 -1.71 16 19 C -0.12 -1.26 9.61 -39.45 -0.38 -1.64 16 20 C -0.09 -0.89 5.74 -104.62 -0.60 -1.49 16 21 C -0.08 -0.80 5.74 -104.62 -0.60 -1.40 16 22 C -0.12 -1.30 9.27 -39.44 -0.37 -1.67 16 23 C -0.08 -0.67 5.67 -28.05 -0.16 -0.83 16 24 C -0.12 -0.82 5.98 -26.70 -0.16 -0.98 16 25 C -0.12 -0.85 5.98 -26.70 -0.16 -1.01 16 26 C -0.08 -0.63 5.67 -28.05 -0.16 -0.79 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.06 0.76 6.44 -51.92 -0.33 0.43 16 30 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 34 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.04 8.05 -52.48 -0.42 0.61 16 41 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -35.18 390.79 -10.89 -46.07 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.62 Total: -1.50 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -3.83 Total: -13.71 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.25 Total: -40.44 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.18 -10.89 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593418601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.369 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds