Wall clock time and date at job start Tue Mar 31 2020 11:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99891 * 2 1 4 4 C 1.50702 * 109.46664 * 269.99725 * 3 2 1 5 5 H 1.07997 * 120.00536 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99556 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99951 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00343 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.46783 * 90.00348 * 8 6 4 10 10 H 1.48493 * 109.47403 * 210.00537 * 8 6 4 11 11 H 1.48502 * 109.46821 * 330.00739 * 8 6 4 12 12 C 1.34779 * 119.99935 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99696 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00209 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.46877 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.46483 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46689 * 180.02562 * 16 15 14 18 18 C 1.38263 * 120.11053 * 269.72339 * 17 16 15 19 19 C 1.37935 * 119.76651 * 180.41560 * 18 17 16 20 20 C 1.38900 * 120.54344 * 0.02562 * 19 18 17 21 21 C 1.37658 * 119.69138 * 359.70441 * 20 19 18 22 22 C 1.37935 * 120.11215 * 90.00262 * 17 16 15 23 23 C 1.50634 * 122.56331 * 180.79939 * 21 20 19 24 24 C 1.52729 * 110.59432 * 341.99912 * 23 21 20 25 25 C 1.53324 * 108.41009 * 51.10413 * 24 23 21 26 26 C 1.50639 * 117.75329 * 179.38690 * 20 19 18 27 27 H 1.09000 * 109.47526 * 270.00012 * 1 2 3 28 28 H 1.09000 * 109.46994 * 30.00722 * 1 2 3 29 29 H 1.09009 * 109.47138 * 150.00121 * 1 2 3 30 30 H 1.08993 * 109.46896 * 29.99675 * 3 2 1 31 31 H 1.08998 * 109.47302 * 150.00019 * 3 2 1 32 32 H 0.97003 * 120.00024 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46807 * 59.99879 * 14 12 2 34 34 H 1.09002 * 109.47096 * 300.00049 * 14 12 2 35 35 H 1.09001 * 109.47045 * 60.00950 * 15 14 12 36 36 H 1.08990 * 109.47355 * 300.00330 * 15 14 12 37 37 H 1.08997 * 109.47375 * 60.00577 * 16 15 14 38 38 H 1.09002 * 109.47313 * 299.99990 * 16 15 14 39 39 H 1.07996 * 120.11747 * 0.39549 * 18 17 16 40 40 H 1.08007 * 119.72876 * 179.97438 * 19 18 17 41 41 H 1.07999 * 119.72461 * 359.73672 * 22 17 16 42 42 H 1.08997 * 109.25147 * 102.28705 * 23 21 20 43 43 H 1.09001 * 109.25257 * 221.71412 * 23 21 20 44 44 H 1.08994 * 109.67716 * 291.37373 * 24 23 21 45 45 H 1.09000 * 109.70613 * 170.84423 * 24 23 21 46 46 H 1.09000 * 109.67889 * 170.47084 * 25 24 23 47 47 H 1.08994 * 109.68330 * 49.91891 * 25 24 23 48 48 H 1.08992 * 109.25427 * 282.51168 * 26 20 19 49 49 H 1.09001 * 109.25420 * 41.94672 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3456 3.2572 -2.9128 8 14 3.7338 3.9288 -0.2530 9 1 5.1069 3.5069 0.1236 10 1 3.7496 5.3553 -0.6649 11 1 2.8273 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4724 0.0017 15 6 2.3797 -3.6352 0.0014 16 6 1.6146 -4.9602 0.0033 17 6 2.5940 -6.1057 0.0037 18 6 3.0395 -6.6378 -1.1922 19 6 3.9293 -7.6918 -1.1835 20 6 4.3815 -8.2239 0.0172 21 6 3.9423 -7.6905 1.2078 22 6 3.0445 -6.6306 1.1970 23 6 4.4039 -8.2053 2.5461 24 6 5.0140 -9.5983 2.4045 25 6 6.0639 -9.5559 1.2879 26 6 5.3413 -9.3832 -0.0466 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8901 -0.5139 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1385 0.5138 32 1 3.8225 4.0832 -3.0900 33 1 0.7584 -2.5307 -0.8881 34 1 0.7591 -2.5295 0.8920 35 1 3.0069 -3.5771 0.8910 36 1 3.0057 -3.5778 -0.8889 37 1 0.9870 -5.0187 -0.8860 38 1 0.9889 -5.0173 0.8940 39 1 2.6918 -6.2299 -2.1298 40 1 4.2766 -8.1072 -2.1180 41 1 2.6958 -6.2144 2.1306 42 1 5.1516 -7.5253 2.9543 43 1 3.5531 -8.2530 3.2257 44 1 4.2347 -10.3159 2.1485 45 1 5.4872 -9.8893 3.3423 46 1 6.6300 -10.4873 1.2809 47 1 6.7395 -8.7163 1.4509 48 1 4.7895 -10.2944 -0.2772 49 1 6.0750 -9.1995 -0.8315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593418601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:42 Heat of formation + Delta-G solvation = -65.012280 kcal Electronic energy + Delta-G solvation = -25271.799702 eV Core-core repulsion = 21775.205411 eV Total energy + Delta-G solvation = -3496.594291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.03219 -40.64165 -37.66465 -36.64975 -35.26347 -34.67048 -33.38861 -31.79450 -30.50437 -29.84272 -27.82652 -27.15138 -24.89652 -24.22545 -23.26066 -23.05433 -22.00837 -20.04156 -19.77607 -19.16634 -17.79947 -17.19892 -17.09901 -16.80693 -16.47431 -16.21350 -15.84867 -15.34715 -15.16869 -14.78177 -14.71118 -14.52343 -14.40416 -14.22981 -13.85594 -13.65738 -13.57612 -13.47267 -13.24646 -13.14661 -12.95858 -12.85110 -12.62839 -12.48746 -12.30765 -12.08077 -11.99728 -11.96055 -11.76495 -11.75311 -11.58225 -11.29027 -11.13437 -10.85240 -10.62508 -9.58923 -9.37893 -9.26426 -8.36069 -6.41149 0.45863 0.50117 1.30584 1.35106 1.43614 1.83961 2.29224 2.38323 2.81714 2.98165 3.69675 3.76104 3.77127 3.90144 4.03960 4.04700 4.11572 4.23274 4.29439 4.33467 4.39933 4.52193 4.57178 4.62254 4.66233 4.66715 4.68114 4.71396 4.74663 4.84486 4.89677 4.94801 4.97984 5.00609 5.01087 5.06813 5.12444 5.15642 5.16841 5.29018 5.36594 5.43677 5.44688 5.44991 5.61617 5.63523 5.77904 5.79802 6.18872 6.22562 6.59927 6.73071 7.19983 7.45606 8.80960 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002206 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.497260 B =12690.419303 C =12953.983712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.221 3.779 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.008 3.992 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.237 1.237 12 C 0.490 3.510 13 O -0.602 6.602 14 C -0.123 4.123 15 C -0.090 4.090 16 C -0.069 4.069 17 C -0.093 4.093 18 C -0.135 4.135 19 C -0.131 4.131 20 C -0.096 4.096 21 C -0.088 4.088 22 C -0.130 4.130 23 C -0.082 4.082 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.079 4.079 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.269 0.731 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 -27.450 11.991 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.099 3.901 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.160 1.160 12 C 0.280 3.720 13 O -0.484 6.484 14 C -0.162 4.162 15 C -0.128 4.128 16 C -0.106 4.106 17 C -0.093 4.093 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.096 4.096 21 C -0.088 4.088 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.154 4.154 25 C -0.158 4.158 26 C -0.116 4.116 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.101 0.899 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.120 -27.292 11.891 30.053 hybrid contribution 0.673 1.165 -0.423 1.410 sum -3.448 -26.126 11.468 28.740 Atomic orbital electron populations 1.21991 0.77419 1.04088 1.03034 1.48037 1.08596 1.05985 1.71631 1.19321 0.92708 0.82888 0.95214 1.21573 1.36779 1.06699 0.92435 0.95462 1.25901 0.95319 0.99030 0.98738 1.70054 1.42729 1.24509 1.21281 0.85684 0.79487 0.77759 0.79819 1.20345 1.19794 1.16039 1.21661 0.87931 0.87031 0.75406 1.90631 1.16940 1.88290 1.52497 1.21725 0.99034 0.89007 1.06443 1.21194 0.97203 0.92815 1.01578 1.20577 0.95819 0.89681 1.04495 1.20005 0.98710 0.97218 0.93339 1.21209 0.98667 0.97228 0.98173 1.21388 0.98096 0.97137 0.98297 1.19902 0.98892 0.98463 0.92380 1.19901 0.97114 0.96261 0.95564 1.21282 0.98534 0.96890 0.98092 1.20521 1.01081 0.97387 0.92889 1.21539 0.98492 0.95913 0.99426 1.21566 0.97725 1.02432 0.94059 1.20503 0.96629 0.95569 0.98930 0.90093 0.91864 0.88837 0.93171 0.96663 0.92249 0.87030 0.85552 0.93038 0.94210 0.89596 0.88818 0.85619 0.85040 0.85228 0.90876 0.89931 0.91515 0.90088 0.89878 0.92533 0.89854 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 10.24 127.77 1.31 3.43 16 2 N -0.61 -25.08 2.86 -851.12 -2.43 -27.51 16 3 C 0.22 11.07 4.23 85.63 0.36 11.43 16 4 C -0.54 -32.37 9.94 25.60 0.25 -32.12 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.48 5.47 84.65 0.46 0.94 16 7 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 8 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 9 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 12 C 0.49 20.07 7.67 87.66 0.67 20.74 16 13 O -0.60 -31.41 15.56 -3.04 -0.05 -31.46 16 14 C -0.12 -3.20 4.25 29.85 0.13 -3.07 16 15 C -0.09 -2.44 4.49 30.60 0.14 -2.30 16 16 C -0.07 -1.34 5.35 29.85 0.16 -1.18 16 17 C -0.09 -2.09 5.13 -19.93 -0.10 -2.19 16 18 C -0.13 -3.07 9.71 22.20 0.22 -2.86 16 19 C -0.13 -2.79 9.61 22.36 0.21 -2.57 16 20 C -0.10 -1.95 5.74 -19.86 -0.11 -2.06 16 21 C -0.09 -1.81 5.74 -19.86 -0.11 -1.92 16 22 C -0.13 -2.80 9.27 22.36 0.21 -2.60 16 23 C -0.08 -1.25 5.67 29.74 0.17 -1.08 16 24 C -0.12 -1.40 5.98 30.61 0.18 -1.21 16 25 C -0.12 -1.52 5.98 30.62 0.18 -1.34 16 26 C -0.08 -1.17 5.67 29.74 0.17 -1.00 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 29 H 0.09 1.97 6.44 -2.38 -0.02 1.96 16 30 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 31 H 0.02 0.83 6.85 -2.39 -0.02 0.81 16 32 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 33 H 0.11 2.44 7.40 -2.38 -0.02 2.43 16 34 H 0.13 2.32 8.11 -2.39 -0.02 2.30 16 35 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 36 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 38 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 39 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.13 2.28 8.05 -2.91 -0.02 2.26 16 41 H 0.13 2.38 8.05 -2.91 -0.02 2.36 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 44 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 45 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 Total: -1.00 -81.64 390.79 5.04 -76.60 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.84 Total: 16.64 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.50 Total: -20.96 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.13 Total: -88.10 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.05 Total: -31.46 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -81.64 5.04 -76.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593418601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.583 kcal (2) G-P(sol) polarization free energy of solvation -81.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds