Wall clock time and date at job start Tue Mar 31 2020 11:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47574 * 89.99780 * 9 7 5 11 11 H 1.48500 * 109.47346 * 209.99892 * 9 7 5 12 12 H 1.48499 * 109.47067 * 329.99541 * 9 7 5 13 13 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 14 14 C 1.46874 * 111.00056 * 59.17775 * 13 2 1 15 15 C 1.53052 * 109.48193 * 174.02918 * 14 13 2 16 16 C 1.52992 * 109.33914 * 59.01589 * 15 14 13 17 17 C 1.53271 * 109.41865 * 182.67433 * 16 15 14 18 18 C 1.53061 * 108.40071 * 175.87103 * 17 16 15 19 19 C 1.50767 * 109.68191 * 48.15130 * 18 17 16 20 20 C 1.38508 * 118.75625 * 161.89101 * 19 18 17 21 21 C 1.38103 * 120.31891 * 179.79132 * 20 19 18 22 22 C 1.38289 * 119.97333 * 0.02562 * 21 20 19 23 23 C 1.37974 * 119.96813 * 0.12281 * 22 21 20 24 24 C 1.38373 * 121.40697 * 341.91184 * 19 18 17 25 25 O 1.35846 * 121.81951 * 0.47866 * 24 19 18 26 26 C 1.52952 * 109.43560 * 302.71380 * 16 15 14 27 27 C 1.46833 * 110.99849 * 294.99707 * 13 2 1 28 28 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 29 29 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 31 31 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 32 32 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 33 33 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46601 * 294.03187 * 14 13 2 35 35 H 1.09002 * 109.46996 * 54.02271 * 14 13 2 36 36 H 1.08998 * 109.49203 * 299.05481 * 15 14 13 37 37 H 1.09002 * 109.51596 * 178.98924 * 15 14 13 38 38 H 1.08994 * 109.67933 * 295.60337 * 17 16 15 39 39 H 1.09004 * 109.67284 * 56.11352 * 17 16 15 40 40 H 1.08999 * 109.43659 * 168.21049 * 18 17 16 41 41 H 1.08996 * 109.44205 * 288.08475 * 18 17 16 42 42 H 1.07996 * 119.83905 * 359.80705 * 20 19 18 43 43 H 1.08001 * 120.01463 * 179.97438 * 21 20 19 44 44 H 1.08002 * 120.01622 * 180.09837 * 22 21 20 45 45 H 1.08001 * 119.88819 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.48738 * 297.27723 * 26 16 15 47 47 H 1.09000 * 109.49312 * 177.20035 * 26 16 15 48 48 H 1.09003 * 109.46388 * 305.95652 * 27 13 2 49 49 H 1.08998 * 109.46105 * 65.93632 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8370 -3.3002 9 14 6.0919 -1.0616 -2.4368 10 1 6.6998 -2.2149 -1.7258 11 1 6.5293 -1.0686 -3.8559 12 1 6.5267 0.2030 -1.7912 13 7 2.0197 -0.6926 1.1994 14 6 1.5327 -2.0775 1.2432 15 6 2.1801 -2.8092 2.4214 16 6 1.8327 -2.0822 3.7219 17 6 2.5345 -2.7742 4.8957 18 6 2.2560 -1.9695 6.1675 19 6 0.7824 -1.6654 6.2636 20 6 0.2579 -1.2908 7.4896 21 6 -1.0866 -1.0008 7.6133 22 6 -1.9159 -1.0845 6.5098 23 6 -1.3997 -1.4602 5.2867 24 6 -0.0457 -1.7542 5.1586 25 8 0.4239 -2.1273 3.9397 26 6 2.2987 -0.6281 3.6323 27 6 1.6489 0.0388 2.4175 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7514 -1.7715 -1.2057 32 1 1.6052 -0.2617 -2.1370 33 1 4.0605 -2.2437 -4.0356 34 1 0.4496 -2.0781 1.3659 35 1 1.7932 -2.5838 0.3137 36 1 3.2621 -2.8235 2.2905 37 1 1.8055 -3.8319 2.4651 38 1 2.1471 -3.7866 5.0097 39 1 3.6082 -2.8106 4.7114 40 1 2.5643 -2.5486 7.0380 41 1 2.8176 -1.0358 6.1364 42 1 0.9036 -1.2248 8.3528 43 1 -1.4905 -0.7095 8.5717 44 1 -2.9672 -0.8564 6.6055 45 1 -2.0484 -1.5248 4.4257 46 1 3.3831 -0.5998 3.5260 47 1 2.0076 -0.0964 4.5381 48 1 1.9941 1.0699 2.3413 49 1 0.5651 0.0262 2.5329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595829657.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:51 Heat of formation + Delta-G solvation = -20.469899 kcal Electronic energy + Delta-G solvation = -27724.295459 eV Core-core repulsion = 24229.632670 eV Total energy + Delta-G solvation = -3494.662788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22516 -38.78618 -37.23700 -34.87405 -33.53833 -32.29164 -30.81679 -30.36603 -29.93090 -27.88145 -27.22471 -24.73807 -23.40974 -23.31730 -22.60483 -22.31434 -20.93525 -19.15599 -18.70672 -17.29697 -16.24149 -16.10266 -15.74787 -15.55914 -15.02568 -14.70162 -14.51567 -14.34490 -14.13514 -13.89049 -13.64437 -13.31776 -13.29631 -12.85428 -12.63444 -12.38202 -12.06241 -11.85855 -11.81499 -11.66657 -11.57863 -11.45144 -11.36834 -11.09449 -10.90312 -10.83857 -10.58929 -10.51877 -10.35440 -10.11475 -9.83925 -9.75293 -9.09508 -8.94180 -8.89793 -8.24088 -8.16039 -7.39290 -5.87568 -3.85297 1.20672 1.36045 3.26174 3.39333 3.45489 3.49535 3.66988 4.49609 4.55591 4.56628 4.60746 4.65412 4.75179 4.92906 4.95320 5.08158 5.15442 5.33845 5.39238 5.43437 5.49173 5.52494 5.65692 5.69301 5.75282 5.79730 5.84583 5.87300 5.89761 5.96552 6.00534 6.05692 6.08939 6.15176 6.23059 6.26093 6.30115 6.38159 6.41561 6.49468 6.56685 6.68703 6.77065 6.81750 7.02783 7.56935 7.58546 7.73451 7.96943 8.07218 8.14998 8.60142 9.21001 9.76314 11.24405 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.003521 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.433780 B = 7951.265839 C = 8604.618850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.028 3.972 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.509 5.509 14 C 0.056 3.944 15 C -0.099 4.099 16 C 0.122 3.878 17 C -0.148 4.148 18 C -0.077 4.077 19 C -0.162 4.162 20 C -0.086 4.086 21 C -0.161 4.161 22 C -0.089 4.089 23 C -0.154 4.154 24 C 0.145 3.855 25 O -0.301 6.301 26 C -0.132 4.132 27 C 0.056 3.944 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.257 0.743 34 H 0.031 0.969 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 -0.118 21.328 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.233 5.233 14 C -0.072 4.072 15 C -0.137 4.137 16 C 0.084 3.916 17 C -0.185 4.185 18 C -0.114 4.114 19 C -0.163 4.163 20 C -0.104 4.104 21 C -0.179 4.179 22 C -0.108 4.108 23 C -0.172 4.172 24 C 0.100 3.900 25 O -0.215 6.215 26 C -0.170 4.170 27 C -0.072 4.072 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.894 -0.288 20.960 22.066 hybrid contribution 0.252 0.095 0.128 0.298 sum -6.642 -0.193 21.087 22.109 Atomic orbital electron populations 1.22508 0.99829 1.01323 1.00543 1.21889 0.90032 0.98337 0.91770 0.91347 1.19236 0.96342 0.95378 0.89899 1.21180 0.91798 1.32879 1.06905 0.92126 1.25007 0.97937 0.95967 0.95995 1.69966 1.35164 1.36997 1.12371 0.86640 0.86521 0.78301 0.76746 1.20952 1.21674 1.20054 1.62091 1.59103 1.01273 1.00839 1.22052 0.96321 0.90131 0.98666 1.21652 1.02423 0.98227 0.91355 1.21875 0.77807 0.96174 0.95741 1.22237 1.02182 0.99668 0.94435 1.20494 0.91734 1.00738 0.98440 1.19841 0.96395 1.06639 0.93413 1.20874 0.95307 0.98051 0.96213 1.20950 0.93812 1.04369 0.98790 1.20894 0.99629 0.98211 0.92024 1.20628 0.93328 1.04523 0.98770 1.18742 0.92704 0.94100 0.84499 1.86024 1.25140 1.81092 1.29258 1.22135 1.02218 0.94333 0.98294 1.21964 0.97377 0.97528 0.90354 0.92711 0.92922 0.94143 0.96146 0.96407 0.93346 0.95058 0.88846 0.88919 0.91229 0.90759 0.89535 0.90449 0.90281 0.86173 0.86229 0.85760 0.85477 0.89662 0.91692 0.91428 0.95134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.50 37.16 0.32 -2.96 16 2 C 0.09 1.80 2.30 -67.71 -0.16 1.64 16 3 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 4 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 5 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.51 -9.61 4.36 -226.65 -0.99 -10.60 16 14 C 0.06 1.01 4.52 -3.81 -0.02 0.99 16 15 C -0.10 -1.49 5.10 -26.71 -0.14 -1.63 16 16 C 0.12 1.64 0.67 -90.51 -0.06 1.58 16 17 C -0.15 -1.63 5.06 -26.56 -0.13 -1.77 16 18 C -0.08 -0.78 5.22 -27.82 -0.15 -0.92 16 19 C -0.16 -1.89 5.21 -104.44 -0.54 -2.43 16 20 C -0.09 -0.87 9.66 -39.53 -0.38 -1.26 16 21 C -0.16 -1.55 10.05 -39.61 -0.40 -1.95 16 22 C -0.09 -0.91 10.04 -39.66 -0.40 -1.31 16 23 C -0.15 -1.88 9.94 -39.34 -0.39 -2.27 16 24 C 0.15 1.94 6.03 -39.20 -0.24 1.70 16 25 O -0.30 -4.43 8.67 -19.26 -0.17 -4.60 16 26 C -0.13 -1.83 4.35 -26.73 -0.12 -1.94 16 27 C 0.06 0.91 4.90 -3.83 -0.02 0.89 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.95 6.52 -51.93 -0.34 0.61 16 30 H 0.04 0.66 6.65 -51.93 -0.35 0.31 16 31 H 0.02 0.54 6.05 -51.93 -0.31 0.23 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.03 0.57 6.30 -51.92 -0.33 0.24 16 35 H 0.09 1.94 5.93 -51.93 -0.31 1.63 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.76 7.07 -51.93 -0.37 0.39 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 0.84 6.04 -51.93 -0.31 0.53 16 48 H 0.07 1.07 8.07 -51.93 -0.42 0.66 16 49 H 0.03 0.51 6.41 -51.93 -0.33 0.18 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -30.24 367.81 -11.33 -41.58 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.10 Total: 1.09 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.34 Total: -23.54 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.25 Total: -36.95 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.17 Total: -4.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.24 -11.33 -41.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595829657.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.109 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds