Wall clock time and date at job start Tue Mar 31 2020 11:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47574 * 89.99780 * 9 7 5 11 11 H 1.48500 * 109.47346 * 209.99892 * 9 7 5 12 12 H 1.48499 * 109.47067 * 329.99541 * 9 7 5 13 13 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 14 14 C 1.46874 * 111.00056 * 59.17775 * 13 2 1 15 15 C 1.53052 * 109.48193 * 174.02918 * 14 13 2 16 16 C 1.52992 * 109.33914 * 59.01589 * 15 14 13 17 17 C 1.53271 * 109.41865 * 182.67433 * 16 15 14 18 18 C 1.53061 * 108.40071 * 175.87103 * 17 16 15 19 19 C 1.50767 * 109.68191 * 48.15130 * 18 17 16 20 20 C 1.38508 * 118.75625 * 161.89101 * 19 18 17 21 21 C 1.38103 * 120.31891 * 179.79132 * 20 19 18 22 22 C 1.38289 * 119.97333 * 0.02562 * 21 20 19 23 23 C 1.37974 * 119.96813 * 0.12281 * 22 21 20 24 24 C 1.38373 * 121.40697 * 341.91184 * 19 18 17 25 25 O 1.35846 * 121.81951 * 0.47866 * 24 19 18 26 26 C 1.52952 * 109.43560 * 302.71380 * 16 15 14 27 27 C 1.46833 * 110.99849 * 294.99707 * 13 2 1 28 28 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 29 29 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 31 31 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 32 32 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 33 33 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46601 * 294.03187 * 14 13 2 35 35 H 1.09002 * 109.46996 * 54.02271 * 14 13 2 36 36 H 1.08998 * 109.49203 * 299.05481 * 15 14 13 37 37 H 1.09002 * 109.51596 * 178.98924 * 15 14 13 38 38 H 1.08994 * 109.67933 * 295.60337 * 17 16 15 39 39 H 1.09004 * 109.67284 * 56.11352 * 17 16 15 40 40 H 1.08999 * 109.43659 * 168.21049 * 18 17 16 41 41 H 1.08996 * 109.44205 * 288.08475 * 18 17 16 42 42 H 1.07996 * 119.83905 * 359.80705 * 20 19 18 43 43 H 1.08001 * 120.01463 * 179.97438 * 21 20 19 44 44 H 1.08002 * 120.01622 * 180.09837 * 22 21 20 45 45 H 1.08001 * 119.88819 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.48738 * 297.27723 * 26 16 15 47 47 H 1.09000 * 109.49312 * 177.20035 * 26 16 15 48 48 H 1.09003 * 109.46388 * 305.95652 * 27 13 2 49 49 H 1.08998 * 109.46105 * 65.93632 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8370 -3.3002 9 14 6.0919 -1.0616 -2.4368 10 1 6.6998 -2.2149 -1.7258 11 1 6.5293 -1.0686 -3.8559 12 1 6.5267 0.2030 -1.7912 13 7 2.0197 -0.6926 1.1994 14 6 1.5327 -2.0775 1.2432 15 6 2.1801 -2.8092 2.4214 16 6 1.8327 -2.0822 3.7219 17 6 2.5345 -2.7742 4.8957 18 6 2.2560 -1.9695 6.1675 19 6 0.7824 -1.6654 6.2636 20 6 0.2579 -1.2908 7.4896 21 6 -1.0866 -1.0008 7.6133 22 6 -1.9159 -1.0845 6.5098 23 6 -1.3997 -1.4602 5.2867 24 6 -0.0457 -1.7542 5.1586 25 8 0.4239 -2.1273 3.9397 26 6 2.2987 -0.6281 3.6323 27 6 1.6489 0.0388 2.4175 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7514 -1.7715 -1.2057 32 1 1.6052 -0.2617 -2.1370 33 1 4.0605 -2.2437 -4.0356 34 1 0.4496 -2.0781 1.3659 35 1 1.7932 -2.5838 0.3137 36 1 3.2621 -2.8235 2.2905 37 1 1.8055 -3.8319 2.4651 38 1 2.1471 -3.7866 5.0097 39 1 3.6082 -2.8106 4.7114 40 1 2.5643 -2.5486 7.0380 41 1 2.8176 -1.0358 6.1364 42 1 0.9036 -1.2248 8.3528 43 1 -1.4905 -0.7095 8.5717 44 1 -2.9672 -0.8564 6.6055 45 1 -2.0484 -1.5248 4.4257 46 1 3.3831 -0.5998 3.5260 47 1 2.0076 -0.0964 4.5381 48 1 1.9941 1.0699 2.3413 49 1 0.5651 0.0262 2.5329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595829657.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:48 Heat of formation + Delta-G solvation = -36.231076 kcal Electronic energy + Delta-G solvation = -27724.978915 eV Core-core repulsion = 24229.632670 eV Total energy + Delta-G solvation = -3495.346244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20671 -39.98551 -38.36961 -35.97537 -35.05282 -33.95286 -32.15957 -31.38207 -30.96875 -29.37657 -28.78677 -25.83108 -25.19616 -24.35503 -23.86064 -23.26592 -22.26236 -20.38784 -19.93658 -18.33225 -18.19578 -17.31490 -16.91942 -16.64541 -16.48590 -16.06396 -15.69302 -15.45911 -15.26657 -15.02139 -14.84371 -14.70612 -14.30829 -14.12932 -13.89119 -13.68081 -13.38553 -13.33344 -13.24340 -13.01043 -12.82587 -12.70125 -12.55319 -12.41030 -12.36503 -12.31388 -12.02259 -11.96448 -11.75699 -11.53807 -11.22201 -11.07229 -11.04270 -10.78245 -10.44650 -9.68457 -9.03900 -8.90372 -8.07949 -6.12964 0.41616 0.53748 1.43721 1.44374 1.55397 2.30923 2.49124 2.85910 3.11612 3.29236 3.59380 3.61223 3.73093 3.87731 3.94148 4.12603 4.16455 4.24677 4.32335 4.33770 4.40705 4.42930 4.49269 4.53718 4.60309 4.62651 4.63512 4.67953 4.81233 4.82953 4.88897 4.92584 4.97739 5.06303 5.09068 5.12459 5.14291 5.17396 5.23113 5.26758 5.34709 5.44374 5.52237 5.59320 5.63980 5.71606 5.91775 5.97187 6.33431 6.44853 6.53664 6.64152 7.00772 7.52920 9.04246 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.003521 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.433780 B = 7951.265839 C = 8604.618850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 H 0.065 0.935 4 C 0.036 3.964 5 C -0.497 4.497 6 H 0.060 0.940 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.520 5.520 14 C 0.064 3.936 15 C -0.095 4.095 16 C 0.123 3.877 17 C -0.143 4.143 18 C -0.074 4.074 19 C -0.171 4.171 20 C -0.089 4.089 21 C -0.159 4.159 22 C -0.092 4.092 23 C -0.174 4.174 24 C 0.116 3.884 25 O -0.323 6.323 26 C -0.124 4.124 27 C 0.059 3.941 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.059 0.941 31 H -0.001 1.001 32 H -0.010 1.010 33 H 0.258 0.742 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.120 0.880 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 0.526 24.671 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 H 0.083 0.917 4 C -0.001 4.001 5 C -0.535 4.535 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.244 5.244 14 C -0.064 4.064 15 C -0.133 4.133 16 C 0.086 3.914 17 C -0.180 4.180 18 C -0.111 4.111 19 C -0.171 4.171 20 C -0.107 4.107 21 C -0.177 4.177 22 C -0.110 4.110 23 C -0.193 4.193 24 C 0.071 3.929 25 O -0.238 6.238 26 C -0.162 4.162 27 C -0.069 4.069 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.017 0.983 32 H 0.008 0.992 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.164 0.836 45 H 0.138 0.862 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.088 0.364 24.326 25.079 hybrid contribution -0.108 -0.096 -0.883 0.895 sum -6.196 0.267 23.443 24.249 Atomic orbital electron populations 1.22358 0.97831 1.01244 1.01603 1.21616 0.91605 0.97384 0.90800 0.91696 1.19073 0.95446 0.94367 0.91205 1.21466 0.93004 1.32375 1.06694 0.92221 1.25858 1.02896 0.95658 0.95670 1.70104 1.37104 1.38060 1.13083 0.85557 0.80588 0.78733 0.76782 1.20153 1.21471 1.19011 1.62029 1.59478 1.01677 1.01264 1.21896 0.96291 0.89868 0.98358 1.21591 1.01949 0.98531 0.91232 1.21776 0.78122 0.95841 0.95701 1.22199 1.02511 0.99439 0.93895 1.20538 0.90884 1.01195 0.98469 1.20082 0.97074 1.06549 0.93429 1.21233 0.95981 0.97091 0.96406 1.21347 0.93699 1.02976 0.99652 1.21201 1.00966 0.97403 0.91426 1.20797 0.93261 1.05626 0.99631 1.19016 0.93453 0.95900 0.84544 1.85978 1.25444 1.81809 1.30551 1.22076 1.02046 0.94591 0.97439 1.21995 0.97343 0.97626 0.89924 0.92425 0.93571 0.92199 0.98307 0.99224 0.93320 0.95508 0.92518 0.89121 0.90456 0.90942 0.88259 0.88299 0.89496 0.83590 0.83478 0.83594 0.86238 0.89383 0.90320 0.91096 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.26 8.50 71.98 0.61 -5.65 16 2 C 0.09 3.98 2.30 44.92 0.10 4.09 16 3 H 0.06 2.77 8.08 -2.39 -0.02 2.75 16 4 C 0.04 1.91 4.27 29.85 0.13 2.04 16 5 C -0.50 -28.20 8.84 25.60 0.23 -27.97 16 6 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 7 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.52 -19.96 4.36 -870.98 -3.80 -23.75 16 14 C 0.06 2.39 4.52 86.33 0.39 2.78 16 15 C -0.10 -2.89 5.10 30.61 0.16 -2.74 16 16 C 0.12 3.21 0.67 -10.72 -0.01 3.21 16 17 C -0.14 -2.87 5.06 30.71 0.16 -2.71 16 18 C -0.07 -1.26 5.22 29.89 0.16 -1.11 16 19 C -0.17 -3.55 5.21 -19.75 -0.10 -3.66 16 20 C -0.09 -1.50 9.66 22.30 0.22 -1.28 16 21 C -0.16 -2.52 10.05 22.25 0.22 -2.30 16 22 C -0.09 -1.68 10.04 22.22 0.22 -1.46 16 23 C -0.17 -4.15 9.94 22.42 0.22 -3.92 16 24 C 0.12 2.98 6.03 22.52 0.14 3.11 16 25 O -0.32 -9.42 8.67 -91.82 -0.80 -10.21 16 26 C -0.12 -3.25 4.35 30.60 0.13 -3.12 16 27 C 0.06 1.87 4.90 86.33 0.42 2.30 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.72 6.52 -2.39 -0.02 1.71 16 30 H 0.06 1.94 6.65 -2.39 -0.02 1.93 16 31 H 0.00 -0.07 6.05 -2.39 -0.01 -0.09 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.03 1.02 6.30 -2.38 -0.02 1.00 16 35 H 0.06 2.52 5.93 -2.39 -0.01 2.51 16 36 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.36 7.07 -2.39 -0.02 1.34 16 42 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.08 1.87 6.04 -2.39 -0.01 1.86 16 48 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 49 H 0.03 0.84 6.41 -2.39 -0.02 0.82 16 Total: -1.00 -66.74 367.81 2.49 -64.25 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.92 Total: 18.32 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 3.85 Total: -38.22 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.51 Total: -81.46 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.80 Total: -10.21 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -66.74 2.49 -64.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595829657.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.020 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds