Wall clock time and date at job start Tue Mar 31 2020 11:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47215 * 2 1 4 4 C 1.46503 * 120.00185 * 263.58720 * 3 2 1 5 5 C 1.50693 * 109.47295 * 270.00119 * 4 3 2 6 6 H 1.08001 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00328 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99966 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00127 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46739 * 120.00463 * 9 7 5 12 12 H 1.48497 * 109.47171 * 239.99945 * 9 7 5 13 13 C 1.34773 * 120.00050 * 83.58284 * 3 2 1 14 14 O 1.21283 * 120.00075 * 185.02192 * 13 3 2 15 15 C 1.50701 * 119.99813 * 5.03468 * 13 3 2 16 16 H 1.08993 * 110.06052 * 8.68773 * 15 13 3 17 17 C 1.54268 * 110.03417 * 130.10931 * 15 13 3 18 18 C 1.54892 * 104.19234 * 142.89089 * 17 15 13 19 19 C 1.54880 * 102.75395 * 322.05610 * 18 17 15 20 20 C 1.53880 * 110.02801 * 247.27433 * 15 13 3 21 21 H 1.09000 * 110.03390 * 121.38454 * 20 15 13 22 22 C 1.52993 * 110.03313 * 359.97438 * 20 15 13 23 23 C 1.50703 * 109.47210 * 174.13073 * 22 20 15 24 24 C 1.38244 * 119.99702 * 90.00156 * 23 22 20 25 25 C 1.38227 * 119.99822 * 180.02562 * 24 23 22 26 26 C 1.38239 * 120.00484 * 359.95718 * 25 24 23 27 27 C 1.38242 * 119.99381 * 0.27747 * 26 25 24 28 28 C 1.38227 * 120.00380 * 270.02391 * 23 22 20 29 29 H 1.09004 * 109.47071 * 59.99623 * 1 2 3 30 30 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47159 * 300.00311 * 1 2 3 32 32 H 1.08998 * 109.46703 * 240.00251 * 2 1 3 33 33 H 1.08994 * 109.46724 * 120.00017 * 2 1 3 34 34 H 1.09006 * 109.46987 * 30.00124 * 4 3 2 35 35 H 1.08999 * 109.47153 * 150.00001 * 4 3 2 36 36 H 0.97001 * 119.99742 * 180.02562 * 8 7 5 37 37 H 1.08995 * 110.48400 * 261.56487 * 17 15 13 38 38 H 1.08997 * 110.48646 * 24.08261 * 17 15 13 39 39 H 1.09004 * 110.75416 * 80.37785 * 18 17 15 40 40 H 1.09004 * 110.75422 * 203.73725 * 18 17 15 41 41 H 1.09005 * 110.48970 * 279.26945 * 19 18 17 42 42 H 1.08997 * 110.48817 * 156.62324 * 19 18 17 43 43 H 1.09007 * 109.47205 * 54.13651 * 22 20 15 44 44 H 1.08997 * 109.47827 * 294.13699 * 22 20 15 45 45 H 1.08001 * 119.99920 * 0.02562 * 24 23 22 46 46 H 1.08000 * 119.99821 * 179.97438 * 25 24 23 47 47 H 1.07992 * 120.00297 * 179.97438 * 26 25 24 48 48 H 1.07999 * 119.99196 * 179.72450 * 27 26 25 49 49 H 1.08003 * 119.99943 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3962 2.0246 -1.2608 5 6 3.8568 1.7746 -1.5344 6 1 4.4448 1.1940 -0.8390 7 6 4.4423 2.2859 -2.6731 8 7 3.7262 2.9924 -3.5202 9 14 6.2531 1.9766 -3.0119 10 1 6.8299 1.1605 -1.9135 11 1 6.3986 1.2484 -4.2979 12 1 6.9701 3.2744 -3.0941 13 6 2.1200 2.0600 1.1598 14 8 2.4368 3.2307 1.1516 15 6 1.8404 1.3642 2.4671 16 1 1.7234 0.2931 2.3029 17 6 2.9914 1.6240 3.4608 18 6 2.2847 1.7653 4.8319 19 6 0.9880 2.5315 4.4708 20 6 0.5665 1.9413 3.1092 21 1 -0.1689 1.1503 3.2559 22 6 -0.0167 3.0410 2.2198 23 6 -1.3372 3.4968 2.7852 24 6 -1.3771 4.5344 3.6979 25 6 -2.5882 4.9521 4.2170 26 6 -3.7597 4.3330 3.8228 27 6 -3.7193 3.2922 2.9138 28 6 -2.5085 2.8772 2.3917 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.7984 1.6111 -2.0731 35 1 2.2185 3.0976 -1.1886 36 1 4.1380 3.3519 -4.3215 37 1 3.6823 0.7811 3.4730 38 1 3.5171 2.5436 3.2038 39 1 2.0512 0.7857 5.2489 40 1 2.8960 2.3450 5.5236 41 1 1.1887 3.5989 4.3782 42 1 0.2171 2.3509 5.2199 43 1 -0.1676 2.6521 1.2127 44 1 0.6735 3.8838 2.1840 45 1 -0.4619 5.0185 4.0054 46 1 -2.6193 5.7624 4.9303 47 1 -4.7058 4.6591 4.2286 48 1 -4.6341 2.8057 2.6092 49 1 -2.4773 2.0661 1.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596889758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:25 Heat of formation + Delta-G solvation = -30.970327 kcal Electronic energy + Delta-G solvation = -27414.176808 eV Core-core repulsion = 23919.058687 eV Total energy + Delta-G solvation = -3495.118121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.31335 -38.97893 -36.98705 -35.18099 -33.02441 -32.79534 -30.88497 -30.14843 -29.42555 -28.86868 -26.81905 -25.08040 -23.08714 -22.94788 -22.56641 -21.30416 -20.53538 -20.06619 -17.64947 -17.14615 -16.43029 -16.29662 -15.62790 -15.43265 -15.08725 -14.85425 -14.56802 -14.24196 -13.77451 -13.60902 -13.34813 -13.20778 -13.18702 -12.75120 -12.62728 -12.33539 -12.08073 -11.87709 -11.66921 -11.43787 -11.21416 -11.16279 -11.03576 -10.92484 -10.88960 -10.80071 -10.65315 -10.54578 -10.49529 -10.44464 -10.20330 -10.09529 -9.57468 -8.90067 -8.75599 -8.54221 -8.42570 -7.58254 -6.03119 -4.07856 1.40004 1.42140 3.29785 3.37017 3.40084 3.46915 3.80764 4.00143 4.45383 4.62051 4.73400 4.83776 4.92384 4.95975 5.03002 5.15210 5.28245 5.31487 5.37027 5.43881 5.49752 5.56698 5.60924 5.62060 5.64910 5.70340 5.76380 5.79610 5.80934 5.96199 6.00921 6.03764 6.07950 6.16255 6.18488 6.23623 6.27400 6.34955 6.49427 6.50126 6.51400 6.53943 6.59803 6.79601 7.05193 7.12130 7.48953 7.60539 7.94270 8.25974 8.49936 8.92984 9.17433 9.57673 11.04771 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.003744 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.091488 B = 7477.408081 C = 8023.064905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.519 3.481 14 O -0.542 6.542 15 C -0.118 4.118 16 H 0.088 0.912 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.062 4.062 21 H 0.073 0.927 22 C -0.089 4.089 23 C -0.066 4.066 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.133 4.133 27 C -0.120 4.120 28 C -0.120 4.120 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.044 0.956 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 -4.072 16.139 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.306 3.694 14 O -0.420 6.420 15 C -0.139 4.139 16 H 0.106 0.894 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.081 4.081 21 H 0.091 0.909 22 C -0.126 4.126 23 C -0.066 4.066 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.151 4.151 27 C -0.138 4.138 28 C -0.138 4.138 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.110 -3.356 15.913 20.276 hybrid contribution 0.920 -0.288 -0.470 1.073 sum -11.189 -3.643 15.443 19.415 Atomic orbital electron populations 1.22299 0.96962 1.01432 1.02369 1.21423 0.93309 0.84576 1.02539 1.48277 1.63061 1.12878 1.08730 1.19254 0.95069 0.94476 0.78573 1.21487 0.95116 1.33483 1.06302 0.92482 1.24934 0.98192 0.94981 0.96011 1.69948 1.36049 1.35292 1.12054 0.86469 0.85100 0.78034 0.77975 1.19823 1.20998 1.20896 1.20077 0.77434 0.87055 0.84864 1.90624 1.48226 1.16213 1.86930 1.22165 0.96567 1.00812 0.94406 0.89397 1.22315 0.96406 1.02826 0.93279 1.22472 0.96587 0.99975 0.96905 1.22444 0.96803 1.00218 0.95756 1.21547 0.95042 0.96891 0.94632 0.90893 1.21108 0.93224 1.00032 0.98260 1.20062 0.95372 0.95229 0.95926 1.21118 0.97854 0.97104 0.97250 1.21118 0.92708 0.99900 1.00146 1.21071 0.98027 0.97198 0.98825 1.21105 0.97678 0.97445 0.97593 1.21095 0.92177 1.00219 1.00303 0.92180 0.92239 0.92747 0.89988 0.91721 0.95272 0.93837 0.92823 0.91700 0.90060 0.91777 0.91605 0.91157 0.91954 0.90790 0.88552 0.86111 0.86431 0.86583 0.86439 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.18 37.16 0.38 -1.90 16 2 C 0.11 1.69 5.82 -4.04 -0.02 1.67 16 3 N -0.60 -12.41 2.47 -175.06 -0.43 -12.84 16 4 C 0.25 6.39 5.17 -5.20 -0.03 6.36 16 5 C -0.52 -14.86 9.38 -34.45 -0.32 -15.18 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.52 10.40 4.60 -10.99 -0.05 10.35 16 14 O -0.54 -13.04 13.81 5.55 0.08 -12.96 16 15 C -0.12 -1.77 2.69 -90.65 -0.24 -2.01 16 16 H 0.09 1.17 5.48 -51.93 -0.28 0.89 16 17 C -0.11 -1.56 6.32 -25.07 -0.16 -1.72 16 18 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 19 C -0.11 -1.35 5.44 -25.07 -0.14 -1.49 16 20 C -0.06 -0.82 2.46 -89.50 -0.22 -1.04 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.09 -1.34 3.44 -27.88 -0.10 -1.43 16 23 C -0.07 -0.88 4.91 -104.62 -0.51 -1.39 16 24 C -0.12 -1.42 8.95 -39.58 -0.35 -1.78 16 25 C -0.12 -1.32 10.05 -39.59 -0.40 -1.71 16 26 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 27 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 28 C -0.12 -1.47 9.70 -39.59 -0.38 -1.86 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 32 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 33 H 0.06 0.89 5.97 -51.93 -0.31 0.58 16 34 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.37 7.30 -51.93 -0.38 0.99 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.89 6.96 -51.93 -0.36 0.52 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.24 6.27 -51.92 -0.33 0.91 16 44 H 0.10 1.71 6.29 -51.93 -0.33 1.38 16 45 H 0.12 1.41 7.40 -52.49 -0.39 1.02 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -32.08 383.02 -10.61 -42.69 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.13 Total: 2.91 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -3.61 Total: -16.53 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.30 Total: -38.77 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.08 -10.61 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.721 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds