Wall clock time and date at job start Tue Mar 31 2020 11:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47215 * 2 1 4 4 C 1.46503 * 120.00185 * 263.58720 * 3 2 1 5 5 C 1.50693 * 109.47295 * 270.00119 * 4 3 2 6 6 H 1.08001 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00328 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99966 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00127 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46739 * 120.00463 * 9 7 5 12 12 H 1.48497 * 109.47171 * 239.99945 * 9 7 5 13 13 C 1.34773 * 120.00050 * 83.58284 * 3 2 1 14 14 O 1.21283 * 120.00075 * 185.02192 * 13 3 2 15 15 C 1.50701 * 119.99813 * 5.03468 * 13 3 2 16 16 H 1.08993 * 110.06052 * 8.68773 * 15 13 3 17 17 C 1.54268 * 110.03417 * 130.10931 * 15 13 3 18 18 C 1.54892 * 104.19234 * 142.89089 * 17 15 13 19 19 C 1.54880 * 102.75395 * 322.05610 * 18 17 15 20 20 C 1.53880 * 110.02801 * 247.27433 * 15 13 3 21 21 H 1.09000 * 110.03390 * 121.38454 * 20 15 13 22 22 C 1.52993 * 110.03313 * 359.97438 * 20 15 13 23 23 C 1.50703 * 109.47210 * 174.13073 * 22 20 15 24 24 C 1.38244 * 119.99702 * 90.00156 * 23 22 20 25 25 C 1.38227 * 119.99822 * 180.02562 * 24 23 22 26 26 C 1.38239 * 120.00484 * 359.95718 * 25 24 23 27 27 C 1.38242 * 119.99381 * 0.27747 * 26 25 24 28 28 C 1.38227 * 120.00380 * 270.02391 * 23 22 20 29 29 H 1.09004 * 109.47071 * 59.99623 * 1 2 3 30 30 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47159 * 300.00311 * 1 2 3 32 32 H 1.08998 * 109.46703 * 240.00251 * 2 1 3 33 33 H 1.08994 * 109.46724 * 120.00017 * 2 1 3 34 34 H 1.09006 * 109.46987 * 30.00124 * 4 3 2 35 35 H 1.08999 * 109.47153 * 150.00001 * 4 3 2 36 36 H 0.97001 * 119.99742 * 180.02562 * 8 7 5 37 37 H 1.08995 * 110.48400 * 261.56487 * 17 15 13 38 38 H 1.08997 * 110.48646 * 24.08261 * 17 15 13 39 39 H 1.09004 * 110.75416 * 80.37785 * 18 17 15 40 40 H 1.09004 * 110.75422 * 203.73725 * 18 17 15 41 41 H 1.09005 * 110.48970 * 279.26945 * 19 18 17 42 42 H 1.08997 * 110.48817 * 156.62324 * 19 18 17 43 43 H 1.09007 * 109.47205 * 54.13651 * 22 20 15 44 44 H 1.08997 * 109.47827 * 294.13699 * 22 20 15 45 45 H 1.08001 * 119.99920 * 0.02562 * 24 23 22 46 46 H 1.08000 * 119.99821 * 179.97438 * 25 24 23 47 47 H 1.07992 * 120.00297 * 179.97438 * 26 25 24 48 48 H 1.07999 * 119.99196 * 179.72450 * 27 26 25 49 49 H 1.08003 * 119.99943 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3962 2.0246 -1.2608 5 6 3.8568 1.7746 -1.5344 6 1 4.4448 1.1940 -0.8390 7 6 4.4423 2.2859 -2.6731 8 7 3.7262 2.9924 -3.5202 9 14 6.2531 1.9766 -3.0119 10 1 6.8299 1.1605 -1.9135 11 1 6.3986 1.2484 -4.2979 12 1 6.9701 3.2744 -3.0941 13 6 2.1200 2.0600 1.1598 14 8 2.4368 3.2307 1.1516 15 6 1.8404 1.3642 2.4671 16 1 1.7234 0.2931 2.3029 17 6 2.9914 1.6240 3.4608 18 6 2.2847 1.7653 4.8319 19 6 0.9880 2.5315 4.4708 20 6 0.5665 1.9413 3.1092 21 1 -0.1689 1.1503 3.2559 22 6 -0.0167 3.0410 2.2198 23 6 -1.3372 3.4968 2.7852 24 6 -1.3771 4.5344 3.6979 25 6 -2.5882 4.9521 4.2170 26 6 -3.7597 4.3330 3.8228 27 6 -3.7193 3.2922 2.9138 28 6 -2.5085 2.8772 2.3917 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.7984 1.6111 -2.0731 35 1 2.2185 3.0976 -1.1886 36 1 4.1380 3.3519 -4.3215 37 1 3.6823 0.7811 3.4730 38 1 3.5171 2.5436 3.2038 39 1 2.0512 0.7857 5.2489 40 1 2.8960 2.3450 5.5236 41 1 1.1887 3.5989 4.3782 42 1 0.2171 2.3509 5.2199 43 1 -0.1676 2.6521 1.2127 44 1 0.6735 3.8838 2.1840 45 1 -0.4619 5.0185 4.0054 46 1 -2.6193 5.7624 4.9303 47 1 -4.7058 4.6591 4.2286 48 1 -4.6341 2.8057 2.6092 49 1 -2.4773 2.0661 1.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596889758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:22 Heat of formation + Delta-G solvation = -47.137972 kcal Electronic energy + Delta-G solvation = -27414.877889 eV Core-core repulsion = 23919.058687 eV Total energy + Delta-G solvation = -3495.819203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.65103 -40.02695 -38.26574 -36.84009 -34.91664 -34.03035 -31.81385 -31.67423 -30.61901 -29.93207 -28.66808 -26.21369 -25.01219 -24.27540 -23.45885 -22.27067 -21.74221 -21.27469 -19.14370 -18.64097 -18.25862 -17.45670 -17.12748 -16.66068 -16.34815 -16.07698 -15.78621 -15.75439 -15.14378 -14.78288 -14.46794 -14.42985 -14.34167 -14.15727 -13.81554 -13.64600 -13.56303 -13.23876 -13.11666 -12.98612 -12.72067 -12.57564 -12.48945 -12.37684 -12.16637 -11.99206 -11.92187 -11.88232 -11.71118 -11.67962 -11.52624 -11.43519 -11.34314 -10.66419 -10.35345 -9.77934 -9.52126 -9.35803 -8.23410 -6.38927 0.49941 0.54017 1.34260 1.36652 1.48626 1.89086 2.31767 2.47319 2.91980 3.05540 3.50835 3.64242 3.68931 3.93862 4.00660 4.08748 4.20369 4.26631 4.33826 4.35095 4.41340 4.46469 4.48898 4.59339 4.62425 4.67793 4.70544 4.73763 4.81358 4.92835 4.95881 4.99471 5.02820 5.05540 5.09296 5.19613 5.20178 5.22540 5.23925 5.29110 5.39553 5.42762 5.53760 5.58547 5.62845 5.65861 5.81647 5.89161 6.06578 6.17514 6.70225 6.87007 7.28153 7.57087 8.83525 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.003744 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.091488 B = 7477.408081 C = 8023.064905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.512 3.488 14 O -0.594 6.594 15 C -0.109 4.109 16 H 0.114 0.886 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.057 4.057 21 H 0.099 0.901 22 C -0.077 4.077 23 C -0.083 4.083 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.132 4.132 27 C -0.121 4.121 28 C -0.132 4.132 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.016 0.984 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.116 0.884 46 H 0.140 0.860 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -6.349 18.571 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.302 3.698 14 O -0.475 6.475 15 C -0.130 4.130 16 H 0.132 0.868 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.075 4.075 21 H 0.117 0.883 22 C -0.114 4.114 23 C -0.083 4.083 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.150 4.150 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.034 0.966 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.134 0.866 46 H 0.158 0.842 47 H 0.163 0.837 48 H 0.160 0.840 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.268 -5.676 18.363 23.355 hybrid contribution 1.204 0.494 -1.254 1.808 sum -12.064 -5.181 17.109 21.566 Atomic orbital electron populations 1.22218 0.94578 1.03574 1.01691 1.21751 0.95259 0.81792 1.03617 1.48305 1.63297 1.14794 1.07223 1.18644 0.94286 0.91961 0.80887 1.21749 0.96103 1.33634 1.06490 0.92842 1.25882 1.03161 0.94485 0.95707 1.70073 1.38207 1.36050 1.12582 0.85360 0.78935 0.78007 0.78467 1.18976 1.19368 1.20797 1.21044 0.75933 0.86587 0.86205 1.90598 1.50389 1.18775 1.87782 1.22240 0.97994 1.01518 0.91249 0.86783 1.22352 0.96400 1.01571 0.94956 1.22457 0.95621 1.01507 0.95099 1.22412 0.97861 0.99253 0.95315 1.21603 0.94407 0.96851 0.94671 0.88312 1.20837 0.93816 0.99187 0.97576 1.19955 0.94771 0.96509 0.97104 1.21189 0.98669 0.97175 0.97702 1.21409 0.92201 1.00287 1.00174 1.21458 0.98982 0.96445 0.98062 1.21422 0.97904 0.97459 0.97142 1.21220 0.92417 1.00653 1.00710 0.94375 0.88501 0.92009 0.90988 0.88486 0.96599 0.98829 0.92462 0.90242 0.93785 0.88914 0.90651 0.92965 0.89802 0.93443 0.92568 0.86584 0.84225 0.83734 0.84008 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.18 71.98 0.73 -3.38 16 2 C 0.10 3.09 5.82 86.38 0.50 3.59 16 3 N -0.61 -26.31 2.47 -826.17 -2.04 -28.36 16 4 C 0.26 14.70 5.17 85.63 0.44 15.15 16 5 C -0.54 -31.92 9.38 25.60 0.24 -31.68 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -57.51 13.29 21.44 0.28 -57.23 16 9 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.51 21.63 4.60 87.66 0.40 22.03 16 14 O -0.59 -31.13 13.81 -3.04 -0.04 -31.17 16 15 C -0.11 -3.19 2.69 -10.81 -0.03 -3.22 16 16 H 0.11 2.71 5.48 -2.39 -0.01 2.70 16 17 C -0.11 -3.17 6.32 31.67 0.20 -2.97 16 18 C -0.11 -2.19 6.91 31.88 0.22 -1.97 16 19 C -0.11 -2.46 5.44 31.67 0.17 -2.29 16 20 C -0.06 -1.44 2.46 -10.07 -0.02 -1.46 16 21 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 22 C -0.08 -2.43 3.44 29.85 0.10 -2.33 16 23 C -0.08 -2.25 4.91 -19.86 -0.10 -2.34 16 24 C -0.13 -3.19 8.95 22.27 0.20 -2.99 16 25 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 26 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 27 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 28 C -0.13 -3.12 9.70 22.27 0.22 -2.90 16 29 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.47 6.55 -2.39 -0.02 1.46 16 32 H 0.07 2.41 8.02 -2.39 -0.02 2.39 16 33 H 0.10 2.42 5.97 -2.39 -0.01 2.41 16 34 H 0.02 0.91 8.07 -2.38 -0.02 0.89 16 35 H -0.01 -0.42 7.36 -2.39 -0.02 -0.43 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.55 7.30 -2.39 -0.02 1.53 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.35 6.96 -2.38 -0.02 1.33 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.71 6.27 -2.38 -0.01 1.69 16 44 H 0.06 2.21 6.29 -2.39 -0.02 2.20 16 45 H 0.12 2.86 7.40 -2.91 -0.02 2.84 16 46 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 47 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 48 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 49 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -75.94 383.02 5.55 -70.38 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.91 Total: 21.09 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 4.41 Total: -22.45 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.76 Total: -85.58 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.04 Total: -31.17 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -75.94 5.55 -70.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.246 kcal (2) G-P(sol) polarization free energy of solvation -75.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds