Wall clock time and date at job start Tue Mar 31 2020 11:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47488 * 2 1 4 4 C 1.46502 * 120.00184 * 270.58550 * 3 2 1 5 5 C 1.50705 * 109.46876 * 269.99917 * 4 3 2 6 6 H 1.07998 * 119.99993 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99887 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99884 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47296 * 89.99589 * 9 7 5 11 11 H 1.48510 * 109.46877 * 209.99725 * 9 7 5 12 12 H 1.48498 * 109.46989 * 329.99296 * 9 7 5 13 13 C 1.34779 * 119.99716 * 90.58188 * 3 2 1 14 14 O 1.21292 * 119.99562 * 185.48981 * 13 3 2 15 15 C 1.50699 * 120.00280 * 5.48764 * 13 3 2 16 16 H 1.08992 * 110.43266 * 324.84131 * 15 13 3 17 17 C 1.54267 * 110.48388 * 87.38739 * 15 13 3 18 18 C 1.53865 * 106.60088 * 142.29116 * 17 15 13 19 19 C 1.54266 * 106.60020 * 359.97438 * 18 17 15 20 20 C 1.54884 * 110.48580 * 202.15815 * 15 13 3 21 21 H 1.09003 * 110.75954 * 321.69512 * 20 15 13 22 22 C 1.52996 * 110.75718 * 85.06848 * 20 15 13 23 23 C 1.50704 * 109.47414 * 179.78012 * 22 20 15 24 24 C 1.38233 * 120.00044 * 269.72585 * 23 22 20 25 25 C 1.38232 * 120.00166 * 179.80900 * 24 23 22 26 26 C 1.38241 * 119.99593 * 0.41800 * 25 24 23 27 27 C 1.38231 * 120.00282 * 359.81495 * 26 25 24 28 28 C 1.38236 * 120.00063 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.47360 * 300.00200 * 1 2 3 30 30 H 1.09005 * 109.46943 * 59.99935 * 1 2 3 31 31 H 1.08994 * 109.47423 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46945 * 239.99512 * 2 1 3 33 33 H 1.09005 * 109.46602 * 120.00487 * 2 1 3 34 34 H 1.08994 * 109.46804 * 29.99711 * 4 3 2 35 35 H 1.09001 * 109.46927 * 150.00036 * 4 3 2 36 36 H 0.97007 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.08999 * 110.03205 * 22.99697 * 17 15 13 38 38 H 1.09005 * 110.07107 * 261.59504 * 17 15 13 39 39 H 1.09008 * 110.03537 * 240.71336 * 18 17 15 40 40 H 1.08996 * 110.07888 * 119.30373 * 18 17 15 41 41 H 1.08999 * 110.48558 * 95.07110 * 19 18 17 42 42 H 1.08995 * 110.48930 * 217.71495 * 19 18 17 43 43 H 1.09007 * 109.46835 * 299.77683 * 22 20 15 44 44 H 1.08998 * 109.47437 * 59.77626 * 22 20 15 45 45 H 1.08001 * 119.99583 * 359.97438 * 24 23 22 46 46 H 1.07993 * 120.00703 * 180.20863 * 25 24 23 47 47 H 1.08005 * 119.99715 * 179.79006 * 26 25 24 48 48 H 1.07994 * 120.00191 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.99924 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2504 2.0761 -1.2687 5 6 3.6695 1.8407 -1.7181 6 1 4.3323 1.2344 -1.1185 7 6 4.1218 2.4001 -2.8942 8 7 3.3148 3.1387 -3.6241 9 14 5.8806 2.1077 -3.4517 10 1 5.9350 0.8901 -4.3000 11 1 6.3527 3.2781 -4.2346 12 1 6.7521 1.9228 -2.2637 13 6 2.2542 2.0124 1.1672 14 8 2.5625 3.1855 1.1706 15 6 2.1348 1.2609 2.4680 16 1 1.3299 0.5282 2.4116 17 6 3.4697 0.5710 2.8173 18 6 3.6373 0.6846 4.3425 19 6 2.3988 1.4402 4.8670 20 6 1.8965 2.2431 3.6416 21 1 2.4827 3.1526 3.5094 22 6 0.4085 2.5708 3.7807 23 6 0.2092 3.5224 4.9321 24 6 -0.0228 3.0307 6.2031 25 6 -0.2017 3.9035 7.2599 26 6 -0.1573 5.2682 7.0443 27 6 0.0698 5.7601 5.7726 28 6 0.2531 4.8872 4.7164 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.5623 1.6945 -2.0230 35 1 2.0848 3.1449 -1.1330 36 1 3.6332 3.5327 -4.4515 37 1 4.2938 1.0750 2.3124 38 1 3.4371 -0.4779 2.5224 39 1 4.5429 1.2439 4.5781 40 1 3.6856 -0.3087 4.7887 41 1 1.6358 0.7369 5.2004 42 1 2.6777 2.1142 5.6769 43 1 0.0508 3.0336 2.8608 44 1 -0.1498 1.6533 3.9668 45 1 -0.0615 1.9645 6.3707 46 1 -0.3795 3.5193 8.2534 47 1 -0.3005 5.9502 7.8695 48 1 0.1041 6.8262 5.6040 49 1 0.4301 5.2715 3.7228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596889759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:29 Heat of formation + Delta-G solvation = -38.508231 kcal Electronic energy + Delta-G solvation = -26903.863548 eV Core-core repulsion = 23408.418559 eV Total energy + Delta-G solvation = -3495.444989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -40.03648 -39.05758 -37.09849 -35.19665 -33.13646 -32.75927 -30.91426 -30.10013 -29.43590 -28.99240 -26.80387 -25.20952 -23.08119 -22.88075 -22.60259 -21.34248 -20.44693 -19.82557 -18.20075 -16.88297 -16.45265 -16.35661 -15.65551 -15.31039 -15.13388 -14.86859 -14.59022 -14.18057 -13.70531 -13.55595 -13.34645 -13.32385 -13.22957 -12.79467 -12.70038 -12.44645 -12.24077 -11.96585 -11.62403 -11.52582 -11.34526 -11.19380 -11.07534 -11.03322 -10.86218 -10.76766 -10.71082 -10.54469 -10.44373 -10.33682 -10.27745 -10.09239 -9.60776 -8.93353 -8.75072 -8.65900 -8.42166 -7.59765 -6.02812 -4.07603 1.34718 1.38671 3.30181 3.36764 3.40033 3.47986 3.76385 3.99579 4.45472 4.55225 4.75909 4.81124 4.90263 4.92167 4.98885 5.12654 5.28137 5.30415 5.33504 5.41276 5.49514 5.52293 5.55394 5.60233 5.65740 5.68153 5.73005 5.75881 5.80462 5.90805 5.92382 6.03184 6.04182 6.05856 6.17600 6.18748 6.26780 6.31612 6.43472 6.44705 6.49881 6.52185 6.58894 6.72577 7.00332 7.12925 7.49297 7.60836 7.94511 8.26222 8.50556 8.92801 9.17221 9.57772 11.05102 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.003334 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.575017 B = 8395.823122 C = 8699.272762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.514 3.486 14 O -0.543 6.543 15 C -0.112 4.112 16 H 0.089 0.911 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.068 4.068 21 H 0.094 0.906 22 C -0.074 4.074 23 C -0.069 4.069 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.131 4.131 27 C -0.119 4.119 28 C -0.114 4.114 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 -4.867 19.616 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.301 3.699 14 O -0.420 6.420 15 C -0.133 4.133 16 H 0.108 0.892 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.087 4.087 21 H 0.113 0.887 22 C -0.112 4.112 23 C -0.069 4.069 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.137 4.137 28 C -0.132 4.132 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.475 -4.138 19.404 21.202 hybrid contribution 0.971 -0.202 -0.537 1.128 sum -6.504 -4.339 18.867 20.423 Atomic orbital electron populations 1.22225 0.96909 1.01302 1.02311 1.21408 0.93406 0.84473 1.02549 1.48228 1.63722 1.13200 1.07770 1.19240 0.96153 0.93657 0.78301 1.21449 0.97158 1.31617 1.06221 0.92535 1.24932 0.97747 0.94952 0.96476 1.69937 1.35578 1.33286 1.14558 0.86521 0.84749 0.77662 0.78633 1.20666 1.21099 1.19912 1.20206 0.77508 0.87290 0.84896 1.90640 1.48046 1.16276 1.87083 1.22256 0.99315 0.98082 0.93664 0.89234 1.22012 0.96585 1.00230 0.95937 1.22103 0.98491 1.00088 0.95207 1.22414 0.97133 0.98351 0.97453 1.21991 0.95082 0.98822 0.92787 0.88749 1.20633 0.96445 0.97809 0.96280 1.19911 0.97955 0.94206 0.94819 1.21034 1.00659 0.99524 0.92345 1.21090 1.00773 0.93548 0.98715 1.21094 1.01360 0.95479 0.96976 1.21153 0.99923 0.99665 0.92965 1.21202 0.99478 0.92967 0.99513 0.93057 0.92098 0.92271 0.90199 0.91609 0.95224 0.93891 0.92763 0.91030 0.91446 0.91839 0.91944 0.91784 0.91670 0.90676 0.91175 0.86294 0.86467 0.86537 0.86275 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.13 37.16 0.38 -1.92 16 2 C 0.11 1.71 5.76 -4.05 -0.02 1.68 16 3 N -0.60 -12.59 2.46 -175.06 -0.43 -13.02 16 4 C 0.25 6.45 5.21 -5.19 -0.03 6.43 16 5 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.51 10.58 6.71 -10.98 -0.07 10.50 16 14 O -0.54 -13.53 15.33 5.55 0.09 -13.45 16 15 C -0.11 -1.67 1.73 -90.12 -0.16 -1.83 16 16 H 0.09 1.16 6.15 -51.93 -0.32 0.84 16 17 C -0.11 -1.52 6.14 -25.62 -0.16 -1.68 16 18 C -0.12 -1.38 6.80 -25.62 -0.17 -1.56 16 19 C -0.12 -1.29 5.25 -25.08 -0.13 -1.42 16 20 C -0.07 -0.94 2.17 -88.64 -0.19 -1.13 16 21 H 0.09 1.60 7.25 -51.93 -0.38 1.22 16 22 C -0.07 -0.93 4.87 -27.88 -0.14 -1.07 16 23 C -0.07 -0.84 4.89 -104.62 -0.51 -1.35 16 24 C -0.12 -1.24 8.99 -39.59 -0.36 -1.60 16 25 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.11 -1.45 9.70 -39.58 -0.38 -1.83 16 29 H 0.05 0.66 7.74 -51.93 -0.40 0.26 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 33 H 0.07 0.89 5.75 -51.93 -0.30 0.59 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 1.19 7.83 -51.93 -0.41 0.78 16 38 H 0.07 0.82 7.72 -51.93 -0.40 0.42 16 39 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.61 8.01 -51.93 -0.42 0.20 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.08 8.09 -51.92 -0.42 0.66 16 44 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -32.63 392.46 -10.73 -43.36 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.45 Total: 1.70 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -3.56 Total: -15.43 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.31 Total: -39.01 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.63 -10.73 -43.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.850 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds