Wall clock time and date at job start Tue Mar 31 2020 11:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47488 * 2 1 4 4 C 1.46502 * 120.00184 * 270.58550 * 3 2 1 5 5 C 1.50705 * 109.46876 * 269.99917 * 4 3 2 6 6 H 1.07998 * 119.99993 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99887 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99884 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47296 * 89.99589 * 9 7 5 11 11 H 1.48510 * 109.46877 * 209.99725 * 9 7 5 12 12 H 1.48498 * 109.46989 * 329.99296 * 9 7 5 13 13 C 1.34779 * 119.99716 * 90.58188 * 3 2 1 14 14 O 1.21292 * 119.99562 * 185.48981 * 13 3 2 15 15 C 1.50699 * 120.00280 * 5.48764 * 13 3 2 16 16 H 1.08992 * 110.43266 * 324.84131 * 15 13 3 17 17 C 1.54267 * 110.48388 * 87.38739 * 15 13 3 18 18 C 1.53865 * 106.60088 * 142.29116 * 17 15 13 19 19 C 1.54266 * 106.60020 * 359.97438 * 18 17 15 20 20 C 1.54884 * 110.48580 * 202.15815 * 15 13 3 21 21 H 1.09003 * 110.75954 * 321.69512 * 20 15 13 22 22 C 1.52996 * 110.75718 * 85.06848 * 20 15 13 23 23 C 1.50704 * 109.47414 * 179.78012 * 22 20 15 24 24 C 1.38233 * 120.00044 * 269.72585 * 23 22 20 25 25 C 1.38232 * 120.00166 * 179.80900 * 24 23 22 26 26 C 1.38241 * 119.99593 * 0.41800 * 25 24 23 27 27 C 1.38231 * 120.00282 * 359.81495 * 26 25 24 28 28 C 1.38236 * 120.00063 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.47360 * 300.00200 * 1 2 3 30 30 H 1.09005 * 109.46943 * 59.99935 * 1 2 3 31 31 H 1.08994 * 109.47423 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46945 * 239.99512 * 2 1 3 33 33 H 1.09005 * 109.46602 * 120.00487 * 2 1 3 34 34 H 1.08994 * 109.46804 * 29.99711 * 4 3 2 35 35 H 1.09001 * 109.46927 * 150.00036 * 4 3 2 36 36 H 0.97007 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.08999 * 110.03205 * 22.99697 * 17 15 13 38 38 H 1.09005 * 110.07107 * 261.59504 * 17 15 13 39 39 H 1.09008 * 110.03537 * 240.71336 * 18 17 15 40 40 H 1.08996 * 110.07888 * 119.30373 * 18 17 15 41 41 H 1.08999 * 110.48558 * 95.07110 * 19 18 17 42 42 H 1.08995 * 110.48930 * 217.71495 * 19 18 17 43 43 H 1.09007 * 109.46835 * 299.77683 * 22 20 15 44 44 H 1.08998 * 109.47437 * 59.77626 * 22 20 15 45 45 H 1.08001 * 119.99583 * 359.97438 * 24 23 22 46 46 H 1.07993 * 120.00703 * 180.20863 * 25 24 23 47 47 H 1.08005 * 119.99715 * 179.79006 * 26 25 24 48 48 H 1.07994 * 120.00191 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.99924 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2504 2.0761 -1.2687 5 6 3.6695 1.8407 -1.7181 6 1 4.3323 1.2344 -1.1185 7 6 4.1218 2.4001 -2.8942 8 7 3.3148 3.1387 -3.6241 9 14 5.8806 2.1077 -3.4517 10 1 5.9350 0.8901 -4.3000 11 1 6.3527 3.2781 -4.2346 12 1 6.7521 1.9228 -2.2637 13 6 2.2542 2.0124 1.1672 14 8 2.5625 3.1855 1.1706 15 6 2.1348 1.2609 2.4680 16 1 1.3299 0.5282 2.4116 17 6 3.4697 0.5710 2.8173 18 6 3.6373 0.6846 4.3425 19 6 2.3988 1.4402 4.8670 20 6 1.8965 2.2431 3.6416 21 1 2.4827 3.1526 3.5094 22 6 0.4085 2.5708 3.7807 23 6 0.2092 3.5224 4.9321 24 6 -0.0228 3.0307 6.2031 25 6 -0.2017 3.9035 7.2599 26 6 -0.1573 5.2682 7.0443 27 6 0.0698 5.7601 5.7726 28 6 0.2531 4.8872 4.7164 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.5623 1.6945 -2.0230 35 1 2.0848 3.1449 -1.1330 36 1 3.6332 3.5327 -4.4515 37 1 4.2938 1.0750 2.3124 38 1 3.4371 -0.4779 2.5224 39 1 4.5429 1.2439 4.5781 40 1 3.6856 -0.3087 4.7887 41 1 1.6358 0.7369 5.2004 42 1 2.6777 2.1142 5.6769 43 1 0.0508 3.0336 2.8608 44 1 -0.1498 1.6533 3.9668 45 1 -0.0615 1.9645 6.3707 46 1 -0.3795 3.5193 8.2534 47 1 -0.3005 5.9502 7.8695 48 1 0.1041 6.8262 5.6040 49 1 0.4301 5.2715 3.7228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596889759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:28 Heat of formation + Delta-G solvation = -55.216857 kcal Electronic energy + Delta-G solvation = -26904.588089 eV Core-core repulsion = 23408.418559 eV Total energy + Delta-G solvation = -3496.169530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36344 -40.10331 -38.34346 -36.90851 -34.92552 -34.03505 -31.75560 -31.67340 -30.64371 -30.01847 -28.64638 -26.25411 -25.02795 -24.22646 -23.44387 -22.27231 -21.69831 -20.85670 -19.69879 -18.60958 -18.13478 -17.47985 -17.26501 -16.42680 -16.36533 -16.00715 -15.87991 -15.67159 -15.16641 -14.70407 -14.55881 -14.34493 -14.30601 -14.17122 -13.90415 -13.77457 -13.54131 -13.27383 -13.16911 -13.11435 -12.70718 -12.55386 -12.52557 -12.38677 -12.19372 -12.04090 -11.90251 -11.85625 -11.73593 -11.73446 -11.48869 -11.42022 -11.24360 -10.66591 -10.45873 -9.77068 -9.52340 -9.41634 -8.24447 -6.40034 0.50323 0.54783 1.33411 1.36799 1.47046 1.85242 2.30474 2.46004 2.92082 3.04464 3.46912 3.67236 3.75051 3.96798 4.02894 4.10617 4.21128 4.23997 4.32862 4.40661 4.42252 4.46987 4.49739 4.58943 4.62932 4.62941 4.70365 4.74166 4.78975 4.92032 4.96511 4.97961 5.00268 5.04198 5.11803 5.19375 5.20423 5.23074 5.27506 5.29785 5.39155 5.42402 5.55415 5.57835 5.63143 5.66934 5.82078 5.87714 6.05111 6.18857 6.68558 6.84102 7.26629 7.52769 8.82546 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.003334 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.575017 B = 8395.823122 C = 8699.272762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.504 3.496 14 O -0.602 6.602 15 C -0.100 4.100 16 H 0.123 0.877 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.104 4.104 20 C -0.067 4.067 21 H 0.048 0.952 22 C -0.068 4.068 23 C -0.083 4.083 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.133 4.133 27 C -0.131 4.131 28 C -0.145 4.145 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.018 0.982 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.031 0.969 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.101 0.899 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.142 0.858 48 H 0.127 0.873 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 -8.291 22.828 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.197 1.197 13 C 0.294 3.706 14 O -0.484 6.484 15 C -0.121 4.121 16 H 0.141 0.859 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.141 4.141 20 C -0.086 4.086 21 H 0.067 0.933 22 C -0.105 4.105 23 C -0.083 4.083 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.151 4.151 27 C -0.149 4.149 28 C -0.163 4.163 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.036 0.964 35 H 0.010 0.990 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.164 0.836 46 H 0.167 0.833 47 H 0.160 0.840 48 H 0.145 0.855 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.718 -7.609 22.628 25.089 hybrid contribution 0.999 0.942 -1.542 2.064 sum -6.720 -6.667 21.086 23.113 Atomic orbital electron populations 1.22168 0.94642 1.03592 1.01557 1.21760 0.95249 0.81509 1.03860 1.48283 1.63880 1.15115 1.06197 1.18651 0.95300 0.91313 0.80643 1.21711 0.97991 1.31852 1.06572 0.92863 1.25893 1.02460 0.94416 0.96495 1.70066 1.37779 1.34011 1.15024 0.85401 0.78817 0.78272 0.78240 1.18585 1.20634 1.19746 1.21327 0.75825 0.86945 0.86514 1.90607 1.50490 1.19193 1.88065 1.22309 1.01304 0.98344 0.90186 0.85868 1.22068 0.94113 1.00869 0.97786 1.22103 0.98281 1.01892 0.93034 1.22383 0.97669 0.98359 0.95704 1.21918 0.95497 0.97228 0.93999 0.93333 1.20563 0.95711 0.98975 0.95245 1.19936 0.99028 0.93564 0.95740 1.21303 0.99600 1.01100 0.91301 1.21509 0.99207 0.93229 0.99958 1.21442 1.00276 0.96534 0.96823 1.21335 1.00169 1.00029 0.93379 1.21212 1.01717 0.94298 0.99054 0.92184 0.94581 0.88307 0.91141 0.87976 0.96353 0.99017 0.92416 0.94989 0.88822 0.92722 0.88551 0.88468 0.91463 0.94013 0.88102 0.83571 0.83318 0.84039 0.85494 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 10.13 71.98 0.73 -3.39 16 2 C 0.10 3.08 5.76 86.38 0.50 3.58 16 3 N -0.60 -26.60 2.46 -826.15 -2.03 -28.63 16 4 C 0.26 14.79 5.21 85.63 0.45 15.23 16 5 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.75 13.29 21.44 0.28 -57.47 16 9 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.50 21.90 6.71 87.66 0.59 22.49 16 14 O -0.60 -32.96 15.33 -3.07 -0.05 -33.00 16 15 C -0.10 -2.93 1.73 -10.47 -0.02 -2.95 16 16 H 0.12 2.76 6.15 -2.39 -0.01 2.75 16 17 C -0.11 -2.88 6.14 31.32 0.19 -2.69 16 18 C -0.12 -2.28 6.80 31.32 0.21 -2.07 16 19 C -0.10 -1.98 5.25 31.66 0.17 -1.81 16 20 C -0.07 -1.86 2.17 -9.51 -0.02 -1.88 16 21 H 0.05 1.79 7.25 -2.39 -0.02 1.77 16 22 C -0.07 -1.69 4.87 29.85 0.15 -1.54 16 23 C -0.08 -1.99 4.89 -19.86 -0.10 -2.09 16 24 C -0.12 -2.08 8.99 22.27 0.20 -1.88 16 25 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 26 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 27 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 28 C -0.14 -3.97 9.70 22.27 0.22 -3.75 16 29 H 0.06 1.43 7.74 -2.39 -0.02 1.41 16 30 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 33 H 0.10 2.45 5.75 -2.38 -0.01 2.43 16 34 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 35 H -0.01 -0.55 7.35 -2.39 -0.02 -0.56 16 36 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 37 H 0.03 1.08 7.83 -2.39 -0.02 1.06 16 38 H 0.09 1.94 7.72 -2.38 -0.02 1.92 16 39 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.28 8.01 -2.39 -0.02 1.26 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.04 1.29 8.09 -2.38 -0.02 1.27 16 44 H 0.10 1.85 8.04 -2.39 -0.02 1.83 16 45 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 47 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 49 H 0.10 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -79.31 392.46 5.76 -73.54 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.90 Total: 18.26 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.63 Total: -20.63 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.74 Total: -86.09 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.05 Total: -33.00 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.31 5.76 -73.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.327 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds