Wall clock time and date at job start Tue Mar 31 2020 11:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46825 * 2 1 4 4 C 1.50704 * 109.47475 * 240.00030 * 2 1 3 5 5 H 1.07995 * 119.99749 * 275.14499 * 4 2 1 6 6 C 1.37880 * 119.99752 * 95.13852 * 4 2 1 7 7 N 1.31514 * 119.99628 * 182.67354 * 6 4 2 8 8 Si 1.86796 * 120.00213 * 2.67940 * 6 4 2 9 9 H 1.48497 * 109.47319 * 84.95220 * 8 6 4 10 10 H 1.48502 * 109.47055 * 204.95347 * 8 6 4 11 11 H 1.48507 * 109.47133 * 324.94818 * 8 6 4 12 12 N 1.46496 * 109.47438 * 119.99653 * 2 1 3 13 13 C 1.46509 * 119.99501 * 60.00137 * 12 2 1 14 14 C 1.34772 * 120.00735 * 240.00538 * 12 2 1 15 15 O 1.21288 * 119.99372 * 359.97438 * 14 12 2 16 16 C 1.50698 * 120.00558 * 180.02562 * 14 12 2 17 17 H 1.09000 * 110.01295 * 332.19821 * 16 14 12 18 18 C 1.54264 * 110.03204 * 210.75415 * 16 14 12 19 19 C 1.54890 * 104.19362 * 217.10263 * 18 16 14 20 20 C 1.54894 * 102.75118 * 37.94168 * 19 18 16 21 21 C 1.53876 * 110.03448 * 93.58041 * 16 14 12 22 22 H 1.08993 * 110.03797 * 238.57307 * 21 16 14 23 23 C 1.53000 * 110.03299 * 0.02562 * 21 16 14 24 24 C 1.50693 * 109.47130 * 184.99945 * 23 21 16 25 25 C 1.38238 * 119.99909 * 269.72264 * 24 23 21 26 26 C 1.38236 * 119.99826 * 179.79092 * 25 24 23 27 27 C 1.38238 * 120.00086 * 0.43761 * 26 25 24 28 28 C 1.38232 * 119.99915 * 359.82209 * 27 26 25 29 29 C 1.38232 * 119.99951 * 359.96984 * 28 27 26 30 30 H 1.09000 * 109.47254 * 57.56284 * 1 2 3 31 31 H 1.09001 * 109.47262 * 177.55933 * 1 2 3 32 32 H 1.08996 * 109.47416 * 297.55860 * 1 2 3 33 33 H 0.97003 * 119.99582 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47272 * 269.99964 * 13 12 2 35 35 H 1.09000 * 109.46861 * 150.00202 * 13 12 2 36 36 H 1.09001 * 109.46805 * 30.00386 * 13 12 2 37 37 H 1.09001 * 110.48445 * 335.77427 * 18 16 14 38 38 H 1.08998 * 110.48780 * 98.42446 * 18 16 14 39 39 H 1.08999 * 110.75855 * 279.63123 * 19 18 16 40 40 H 1.09001 * 110.75662 * 156.25641 * 19 18 16 41 41 H 1.09001 * 110.48555 * 203.38115 * 20 19 18 42 42 H 1.09000 * 110.59868 * 80.78787 * 20 19 18 43 43 H 1.09000 * 109.47212 * 305.00078 * 23 21 16 44 44 H 1.09006 * 109.47183 * 64.99838 * 23 21 16 45 45 H 1.07999 * 120.00185 * 0.02562 * 25 24 23 46 46 H 1.07999 * 120.00088 * 180.28198 * 26 25 24 47 47 H 1.07996 * 120.00060 * 179.83110 * 27 26 25 48 48 H 1.08003 * 120.00120 * 179.97438 * 28 27 26 49 49 H 1.08005 * 120.00386 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1333 -1.7856 -1.2298 6 6 2.3630 0.0124 -2.3571 7 7 2.7513 -0.6112 -3.4479 8 14 2.2597 1.8774 -2.3340 9 1 3.5184 2.4361 -1.7784 10 1 2.0635 2.3795 -3.7177 11 1 1.1148 2.2993 -1.4874 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0864 1.1255 1.8912 16 6 3.2960 -0.7461 3.3135 17 1 2.6036 -1.5393 3.5954 18 6 3.4540 0.2564 4.4753 19 6 4.7274 -0.2199 5.2174 20 6 5.6505 -0.6701 4.0580 21 6 4.6925 -1.3353 3.0481 22 1 4.6780 -2.4142 3.2021 23 6 5.1336 -1.0147 1.6186 24 6 6.4449 -1.6996 1.3320 25 6 7.6362 -1.0487 1.5931 26 6 8.8391 -1.6787 1.3343 27 6 8.8508 -2.9560 0.8059 28 6 7.6596 -3.6048 0.5398 29 6 6.4567 -2.9765 0.8027 30 1 -0.3634 0.5512 -0.8673 31 1 -0.3634 -1.0267 -0.0438 32 1 -0.3634 0.4754 0.9110 33 1 2.9843 -0.1026 -4.2404 34 1 0.7375 -2.1444 1.9993 35 1 2.4629 -2.5818 1.9863 36 1 1.5295 -2.5968 0.4707 37 1 3.5920 1.2670 4.0909 38 1 2.5886 0.2136 5.1366 39 1 4.4996 -1.0571 5.8771 40 1 5.1794 0.6006 5.7747 41 1 6.3880 -1.3891 4.4147 42 1 6.1449 0.1895 3.6055 43 1 4.3779 -1.3686 0.9172 44 1 5.2549 0.0630 1.5088 45 1 7.6271 -0.0495 2.0029 46 1 9.7698 -1.1719 1.5425 47 1 9.7906 -3.4471 0.6012 48 1 7.6687 -4.6026 0.1266 49 1 5.5259 -3.4836 0.5952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597144644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:48 Heat of formation + Delta-G solvation = -27.961978 kcal Electronic energy + Delta-G solvation = -27869.521858 eV Core-core repulsion = 24374.534188 eV Total energy + Delta-G solvation = -3494.987669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.30322 -38.87782 -37.12181 -35.29765 -32.90334 -32.66926 -30.78540 -30.63243 -28.99057 -28.52813 -26.16008 -25.28251 -24.97946 -22.42414 -22.13225 -21.17243 -20.36317 -19.54187 -17.77582 -17.27836 -16.67377 -16.17080 -15.64480 -15.56881 -14.97224 -14.79785 -14.56693 -14.15297 -13.75981 -13.42077 -13.13539 -12.96514 -12.88701 -12.52223 -12.44967 -12.36430 -12.24866 -11.92390 -11.83120 -11.46842 -11.34576 -11.17185 -11.06907 -10.94304 -10.88102 -10.71316 -10.60323 -10.50359 -10.42124 -10.39551 -10.20640 -9.79013 -9.26261 -8.89124 -8.71665 -8.61285 -8.42361 -7.62782 -6.16272 -4.18293 1.57540 1.60341 3.30863 3.33898 3.38680 3.45481 3.87048 3.99904 4.38937 4.63106 4.71754 4.85784 5.07456 5.07956 5.16401 5.22468 5.30803 5.38986 5.48351 5.55544 5.62028 5.65497 5.67635 5.73645 5.77969 5.79143 5.82617 5.97009 5.98587 6.08881 6.11615 6.21268 6.25180 6.26205 6.30931 6.35688 6.41170 6.45529 6.51523 6.59780 6.66724 6.66949 6.69252 6.94490 6.95015 7.09293 7.22698 7.50365 7.66028 8.17231 8.52256 8.84725 9.00310 9.46832 10.95488 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.005780 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.031742 B = 4842.957231 C = 6355.334892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.223 3.777 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.891 5.891 8 Si 0.872 3.128 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.516 3.484 15 O -0.556 6.556 16 C -0.113 4.113 17 H 0.087 0.913 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.065 4.065 22 H 0.076 0.924 23 C -0.094 4.094 24 C -0.062 4.062 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.119 4.119 29 C -0.113 4.113 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 -4.955 14.762 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.528 5.528 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.189 1.189 12 N -0.321 5.321 13 C -0.063 4.063 14 C 0.304 3.696 15 O -0.436 6.436 16 C -0.135 4.135 17 H 0.106 0.894 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.084 4.084 22 H 0.094 0.906 23 C -0.131 4.131 24 C -0.062 4.062 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.137 4.137 29 C -0.131 4.131 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.421 -4.332 14.422 16.370 hybrid contribution -0.057 0.745 -0.329 0.816 sum 6.364 -3.587 14.092 15.873 Atomic orbital electron populations 1.22216 0.98548 1.00633 0.99143 1.19263 0.90633 0.94896 0.82992 0.91928 1.21086 1.44571 0.95557 0.94881 0.90419 1.24928 0.93735 0.98277 0.95322 1.69884 1.44445 1.36002 1.02449 0.86940 0.79886 0.86367 0.76904 1.19653 1.21470 1.18884 1.48320 1.49215 1.11547 1.22973 1.21646 0.98847 0.83383 1.02428 1.20275 0.78319 0.86876 0.84163 1.90611 1.58546 1.17429 1.77008 1.22088 0.97818 0.98828 0.94762 0.89439 1.22350 0.97488 1.00081 0.95105 1.22471 0.95918 1.00336 0.97247 1.22454 0.97254 1.00229 0.95350 1.21589 0.92446 0.99558 0.94762 0.90605 1.21033 0.94421 1.01416 0.96199 1.19943 0.95141 0.94214 0.96947 1.21079 0.92051 0.99813 1.00585 1.21071 0.97675 0.95342 0.99990 1.21047 0.97829 0.95489 1.00749 1.21106 0.92598 0.99879 1.00153 1.21122 0.98150 0.94913 0.98888 0.92681 0.93285 0.95641 0.92453 0.93982 0.92389 0.90033 0.89634 0.91892 0.91779 0.91658 0.91816 0.91241 0.88956 0.89983 0.86387 0.86592 0.86668 0.86407 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.14 37.15 0.34 -2.74 16 2 C 0.22 5.26 2.26 -69.09 -0.16 5.11 16 3 H 0.06 1.64 4.14 -51.93 -0.22 1.43 16 4 C -0.52 -13.99 8.73 -34.44 -0.30 -14.29 16 5 H 0.08 2.19 6.82 -52.49 -0.36 1.83 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 8 Si 0.87 22.21 26.86 -169.99 -4.57 17.65 16 9 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.26 -6.51 6.79 56.52 0.38 -6.12 16 12 N -0.59 -11.80 2.22 -175.26 -0.39 -12.19 16 13 C 0.08 1.29 8.83 59.85 0.53 1.82 16 14 C 0.52 10.05 4.53 -10.99 -0.05 10.00 16 15 O -0.56 -12.94 14.35 5.55 0.08 -12.86 16 16 C -0.11 -1.66 2.41 -90.65 -0.22 -1.88 16 17 H 0.09 1.11 6.54 -51.93 -0.34 0.77 16 18 C -0.11 -1.50 6.31 -25.07 -0.16 -1.65 16 19 C -0.12 -1.34 6.91 -24.74 -0.17 -1.51 16 20 C -0.12 -1.40 5.43 -25.07 -0.14 -1.54 16 21 C -0.06 -0.89 2.69 -89.50 -0.24 -1.13 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 C -0.09 -1.58 3.55 -27.89 -0.10 -1.68 16 24 C -0.06 -0.98 4.90 -104.63 -0.51 -1.49 16 25 C -0.12 -1.68 8.92 -39.58 -0.35 -2.03 16 26 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 27 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 28 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 29 C -0.11 -1.69 9.70 -39.58 -0.38 -2.08 16 30 H 0.05 1.18 7.96 -51.93 -0.41 0.77 16 31 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 36 H 0.08 1.41 6.56 -51.93 -0.34 1.07 16 37 H 0.09 1.35 6.89 -51.93 -0.36 0.99 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.91 6.91 -51.93 -0.36 0.55 16 43 H 0.09 1.82 6.64 -51.93 -0.34 1.47 16 44 H 0.08 1.59 7.05 -51.93 -0.37 1.23 16 45 H 0.12 1.57 7.37 -52.49 -0.39 1.19 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 48 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 49 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -31.40 376.76 -9.64 -41.03 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.01 Total: 5.37 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.20 Total: -18.91 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.39 Total: -37.96 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.57 Total: 17.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.40 -9.64 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.073 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds