Wall clock time and date at job start Tue Mar 31 2020 11:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46825 * 2 1 4 4 C 1.50704 * 109.47475 * 240.00030 * 2 1 3 5 5 H 1.07995 * 119.99749 * 275.14499 * 4 2 1 6 6 C 1.37880 * 119.99752 * 95.13852 * 4 2 1 7 7 N 1.31514 * 119.99628 * 182.67354 * 6 4 2 8 8 Si 1.86796 * 120.00213 * 2.67940 * 6 4 2 9 9 H 1.48497 * 109.47319 * 84.95220 * 8 6 4 10 10 H 1.48502 * 109.47055 * 204.95347 * 8 6 4 11 11 H 1.48507 * 109.47133 * 324.94818 * 8 6 4 12 12 N 1.46496 * 109.47438 * 119.99653 * 2 1 3 13 13 C 1.46509 * 119.99501 * 60.00137 * 12 2 1 14 14 C 1.34772 * 120.00735 * 240.00538 * 12 2 1 15 15 O 1.21288 * 119.99372 * 359.97438 * 14 12 2 16 16 C 1.50698 * 120.00558 * 180.02562 * 14 12 2 17 17 H 1.09000 * 110.01295 * 332.19821 * 16 14 12 18 18 C 1.54264 * 110.03204 * 210.75415 * 16 14 12 19 19 C 1.54890 * 104.19362 * 217.10263 * 18 16 14 20 20 C 1.54894 * 102.75118 * 37.94168 * 19 18 16 21 21 C 1.53876 * 110.03448 * 93.58041 * 16 14 12 22 22 H 1.08993 * 110.03797 * 238.57307 * 21 16 14 23 23 C 1.53000 * 110.03299 * 0.02562 * 21 16 14 24 24 C 1.50693 * 109.47130 * 184.99945 * 23 21 16 25 25 C 1.38238 * 119.99909 * 269.72264 * 24 23 21 26 26 C 1.38236 * 119.99826 * 179.79092 * 25 24 23 27 27 C 1.38238 * 120.00086 * 0.43761 * 26 25 24 28 28 C 1.38232 * 119.99915 * 359.82209 * 27 26 25 29 29 C 1.38232 * 119.99951 * 359.96984 * 28 27 26 30 30 H 1.09000 * 109.47254 * 57.56284 * 1 2 3 31 31 H 1.09001 * 109.47262 * 177.55933 * 1 2 3 32 32 H 1.08996 * 109.47416 * 297.55860 * 1 2 3 33 33 H 0.97003 * 119.99582 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47272 * 269.99964 * 13 12 2 35 35 H 1.09000 * 109.46861 * 150.00202 * 13 12 2 36 36 H 1.09001 * 109.46805 * 30.00386 * 13 12 2 37 37 H 1.09001 * 110.48445 * 335.77427 * 18 16 14 38 38 H 1.08998 * 110.48780 * 98.42446 * 18 16 14 39 39 H 1.08999 * 110.75855 * 279.63123 * 19 18 16 40 40 H 1.09001 * 110.75662 * 156.25641 * 19 18 16 41 41 H 1.09001 * 110.48555 * 203.38115 * 20 19 18 42 42 H 1.09000 * 110.59868 * 80.78787 * 20 19 18 43 43 H 1.09000 * 109.47212 * 305.00078 * 23 21 16 44 44 H 1.09006 * 109.47183 * 64.99838 * 23 21 16 45 45 H 1.07999 * 120.00185 * 0.02562 * 25 24 23 46 46 H 1.07999 * 120.00088 * 180.28198 * 26 25 24 47 47 H 1.07996 * 120.00060 * 179.83110 * 27 26 25 48 48 H 1.08003 * 120.00120 * 179.97438 * 28 27 26 49 49 H 1.08005 * 120.00386 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1333 -1.7856 -1.2298 6 6 2.3630 0.0124 -2.3571 7 7 2.7513 -0.6112 -3.4479 8 14 2.2597 1.8774 -2.3340 9 1 3.5184 2.4361 -1.7784 10 1 2.0635 2.3795 -3.7177 11 1 1.1148 2.2993 -1.4874 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0864 1.1255 1.8912 16 6 3.2960 -0.7461 3.3135 17 1 2.6036 -1.5393 3.5954 18 6 3.4540 0.2564 4.4753 19 6 4.7274 -0.2199 5.2174 20 6 5.6505 -0.6701 4.0580 21 6 4.6925 -1.3353 3.0481 22 1 4.6780 -2.4142 3.2021 23 6 5.1336 -1.0147 1.6186 24 6 6.4449 -1.6996 1.3320 25 6 7.6362 -1.0487 1.5931 26 6 8.8391 -1.6787 1.3343 27 6 8.8508 -2.9560 0.8059 28 6 7.6596 -3.6048 0.5398 29 6 6.4567 -2.9765 0.8027 30 1 -0.3634 0.5512 -0.8673 31 1 -0.3634 -1.0267 -0.0438 32 1 -0.3634 0.4754 0.9110 33 1 2.9843 -0.1026 -4.2404 34 1 0.7375 -2.1444 1.9993 35 1 2.4629 -2.5818 1.9863 36 1 1.5295 -2.5968 0.4707 37 1 3.5920 1.2670 4.0909 38 1 2.5886 0.2136 5.1366 39 1 4.4996 -1.0571 5.8771 40 1 5.1794 0.6006 5.7747 41 1 6.3880 -1.3891 4.4147 42 1 6.1449 0.1895 3.6055 43 1 4.3779 -1.3686 0.9172 44 1 5.2549 0.0630 1.5088 45 1 7.6271 -0.0495 2.0029 46 1 9.7698 -1.1719 1.5425 47 1 9.7906 -3.4471 0.6012 48 1 7.6687 -4.6026 0.1266 49 1 5.5259 -3.4836 0.5952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:44 Heat of formation + Delta-G solvation = -43.997302 kcal Electronic energy + Delta-G solvation = -27870.217202 eV Core-core repulsion = 24374.534188 eV Total energy + Delta-G solvation = -3495.683013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.65759 -40.06361 -38.40742 -36.98989 -34.70471 -34.00495 -32.47400 -31.75564 -30.13707 -29.68740 -27.60521 -27.26867 -26.17443 -23.68584 -23.47399 -22.25981 -21.43996 -21.09234 -19.37441 -19.01351 -18.07120 -17.54264 -17.10523 -16.86412 -16.26233 -16.17666 -15.82077 -15.50083 -15.31561 -14.65443 -14.51989 -14.28629 -14.22147 -14.19215 -14.09686 -13.64294 -13.58700 -13.39396 -13.14270 -13.09651 -12.86059 -12.66084 -12.52215 -12.41357 -12.27419 -11.93472 -11.87094 -11.85324 -11.71414 -11.53916 -11.46566 -11.36371 -11.26542 -10.81923 -10.47678 -9.79079 -9.53494 -9.27871 -8.37881 -6.39889 0.49042 0.52713 1.22078 1.28759 1.36259 1.82697 2.24581 2.35309 2.90608 3.05306 3.50756 3.62507 3.70212 3.94086 4.00458 4.17188 4.23390 4.31645 4.34183 4.43354 4.49181 4.51048 4.53958 4.57684 4.62214 4.67090 4.71049 4.72585 4.73579 4.81444 4.83469 4.95234 4.98915 5.04612 5.09323 5.14628 5.18361 5.23876 5.25237 5.29974 5.31785 5.41689 5.53935 5.54739 5.61092 5.63932 5.79870 5.86225 6.16324 6.17208 6.65119 6.82309 7.25214 7.46346 8.77290 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.005780 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.031742 B = 4842.957231 C = 6355.334892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.222 3.778 3 H 0.034 0.966 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.032 3.968 7 N -0.933 5.933 8 Si 0.918 3.082 9 H -0.290 1.290 10 H -0.278 1.278 11 H -0.251 1.251 12 N -0.598 5.598 13 C 0.078 3.922 14 C 0.510 3.490 15 O -0.603 6.603 16 C -0.107 4.107 17 H 0.118 0.882 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.059 4.059 22 H 0.097 0.903 23 C -0.080 4.080 24 C -0.082 4.082 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.131 4.131 28 C -0.123 4.123 29 C -0.132 4.132 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.118 0.882 46 H 0.143 0.857 47 H 0.147 0.853 48 H 0.139 0.861 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -6.361 17.549 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.120 3.880 3 H 0.052 0.948 4 C -0.548 4.548 5 H 0.074 0.926 6 C -0.167 4.167 7 N -0.572 5.572 8 Si 0.744 3.256 9 H -0.216 1.216 10 H -0.203 1.203 11 H -0.175 1.175 12 N -0.327 5.327 13 C -0.064 4.064 14 C 0.300 3.700 15 O -0.485 6.485 16 C -0.128 4.128 17 H 0.136 0.864 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.150 4.150 21 C -0.078 4.078 22 H 0.116 0.884 23 C -0.118 4.118 24 C -0.082 4.082 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.141 4.141 29 C -0.151 4.151 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.136 0.864 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.965 -5.761 17.231 19.458 hybrid contribution -0.168 1.124 -1.186 1.643 sum 6.797 -4.636 16.045 18.031 Atomic orbital electron populations 1.22067 0.96088 1.01764 0.99791 1.19033 0.92403 0.93315 0.83293 0.94756 1.21310 1.42898 0.94680 0.95930 0.92614 1.25529 0.94320 1.01475 0.95407 1.69978 1.46872 1.37211 1.03169 0.86199 0.79322 0.82706 0.77329 1.21626 1.20314 1.17503 1.48257 1.49420 1.13121 1.21945 1.21849 1.01337 0.80898 1.02324 1.21145 0.77117 0.86503 0.85220 1.90585 1.59870 1.19783 1.78291 1.22187 0.98576 0.99508 0.92534 0.86424 1.22361 0.99790 0.97955 0.94992 1.22457 0.93995 1.01583 0.96738 1.22416 0.97426 0.99837 0.95271 1.21634 0.92289 1.00848 0.93052 0.88448 1.20784 0.94552 0.98795 0.97669 1.19922 0.94919 0.94831 0.98573 1.21189 0.92397 1.00030 1.01175 1.21415 0.97996 0.95603 0.98961 1.21450 0.98780 0.95275 0.99370 1.21407 0.92223 1.00844 0.99609 1.21203 0.98957 0.95023 0.99872 0.93497 0.91767 0.93638 0.92469 0.90799 0.89745 0.91935 0.92859 0.89770 0.89063 0.90578 0.90110 0.93063 0.92529 0.93819 0.86355 0.83895 0.83541 0.84269 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 9.14 71.98 0.66 -5.03 16 2 C 0.22 10.67 2.26 44.25 0.10 10.77 16 3 H 0.03 1.86 4.14 -2.38 -0.01 1.85 16 4 C -0.51 -28.23 8.73 25.60 0.22 -28.01 16 5 H 0.06 3.28 6.82 -2.91 -0.02 3.26 16 6 C 0.03 1.88 5.47 84.66 0.46 2.35 16 7 N -0.93 -57.64 13.96 21.45 0.30 -57.35 16 8 Si 0.92 47.43 26.86 68.60 1.84 49.27 16 9 H -0.29 -15.69 7.11 99.48 0.71 -14.98 16 10 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.25 -12.30 6.79 99.48 0.68 -11.62 16 12 N -0.60 -23.96 2.22 -826.78 -1.83 -25.79 16 13 C 0.08 2.39 8.83 127.77 1.13 3.51 16 14 C 0.51 20.08 4.53 87.66 0.40 20.48 16 15 O -0.60 -29.27 14.35 -3.05 -0.04 -29.31 16 16 C -0.11 -2.96 2.41 -10.82 -0.03 -2.98 16 17 H 0.12 2.54 6.54 -2.39 -0.02 2.53 16 18 C -0.11 -2.80 6.31 31.67 0.20 -2.60 16 19 C -0.11 -2.08 6.91 31.89 0.22 -1.86 16 20 C -0.11 -2.54 5.43 31.67 0.17 -2.36 16 21 C -0.06 -1.57 2.69 -10.07 -0.03 -1.60 16 22 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 23 C -0.08 -2.84 3.55 29.85 0.11 -2.73 16 24 C -0.08 -2.63 4.90 -19.87 -0.10 -2.73 16 25 C -0.13 -3.70 8.92 22.27 0.20 -3.50 16 26 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 27 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 28 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 29 C -0.13 -3.99 9.70 22.27 0.22 -3.77 16 30 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16 31 H 0.06 2.41 7.75 -2.39 -0.02 2.39 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.10 6.30 -2.39 -0.02 2.08 16 36 H 0.06 2.16 6.56 -2.39 -0.02 2.14 16 37 H 0.05 1.68 6.89 -2.39 -0.02 1.67 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.34 6.91 -2.39 -0.02 1.33 16 43 H 0.06 2.36 6.64 -2.39 -0.02 2.34 16 44 H 0.04 1.83 7.05 -2.38 -0.02 1.81 16 45 H 0.12 3.25 7.37 -2.91 -0.02 3.23 16 46 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 47 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 48 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 49 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -72.89 376.76 5.76 -67.13 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.89 Total: 24.34 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.60 Total: -28.30 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.53 Total: -83.14 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.04 Total: -29.31 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.84 Total: 49.27 kcal Total: -72.89 5.76 -67.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.133 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds