Wall clock time and date at job start Tue Mar 31 2020 11:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46820 * 2 1 4 4 C 1.50697 * 109.47198 * 120.00809 * 2 1 3 5 5 H 1.07994 * 120.00130 * 120.00100 * 4 2 1 6 6 C 1.37882 * 119.99650 * 299.99744 * 4 2 1 7 7 N 1.31506 * 119.99883 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99934 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47459 * 90.00104 * 8 6 4 10 10 H 1.48502 * 109.46926 * 209.99971 * 8 6 4 11 11 H 1.48504 * 109.47307 * 329.99555 * 8 6 4 12 12 C 1.50703 * 109.46910 * 240.00382 * 2 1 3 13 13 O 1.21277 * 120.00046 * 239.99967 * 12 2 1 14 14 N 1.34780 * 119.99975 * 60.00140 * 12 2 1 15 15 C 1.46504 * 120.00177 * 174.60878 * 14 12 2 16 16 C 1.52997 * 109.47072 * 64.89304 * 15 14 12 17 17 C 1.50701 * 109.47169 * 55.25366 * 16 15 14 18 18 C 1.38242 * 119.99685 * 274.49061 * 17 16 15 19 19 C 1.38241 * 119.99020 * 179.80950 * 18 17 16 20 20 C 1.38225 * 120.00407 * 0.39513 * 19 18 17 21 21 C 1.38229 * 120.00255 * 359.85643 * 20 19 18 22 22 C 1.38231 * 120.00024 * 359.95714 * 21 20 19 23 23 C 1.52994 * 109.47393 * 184.89386 * 15 14 12 24 24 C 1.53005 * 109.46956 * 60.00101 * 23 15 14 25 25 C 1.52996 * 109.47544 * 60.00096 * 24 23 15 26 26 C 1.53003 * 109.46663 * 300.00266 * 25 24 23 27 27 C 1.52997 * 109.47480 * 59.99798 * 26 25 24 28 28 H 1.09003 * 109.47269 * 59.99772 * 1 2 3 29 29 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47349 * 299.99763 * 1 2 3 31 31 H 0.96996 * 120.00001 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00068 * 354.61256 * 14 12 2 33 33 H 1.08999 * 109.47430 * 175.25383 * 16 15 14 34 34 H 1.09002 * 109.46930 * 295.25787 * 16 15 14 35 35 H 1.07994 * 120.00131 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.99386 * 180.22848 * 19 18 17 37 37 H 1.08003 * 119.99874 * 179.83637 * 20 19 18 38 38 H 1.08004 * 120.00577 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00303 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.47102 * 179.97438 * 23 15 14 41 41 H 1.09005 * 109.47224 * 300.00485 * 23 15 14 42 42 H 1.08998 * 109.46779 * 299.99664 * 24 23 15 43 43 H 1.08997 * 109.46917 * 180.02562 * 24 23 15 44 44 H 1.08994 * 109.47706 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.46978 * 59.99696 * 25 24 23 46 46 H 1.08999 * 109.46958 * 299.99442 * 26 25 24 47 47 H 1.09005 * 109.46666 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.47039 * 179.97438 * 27 26 25 49 49 H 1.08999 * 109.47316 * 59.99863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6992 -0.2396 2.4827 7 7 2.1372 -0.8599 3.5564 8 14 0.6248 1.2788 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9759 1.9947 3.9069 11 1 0.8471 2.1764 1.4922 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.2893 -0.8673 -3.6486 16 6 1.8060 -2.3145 -3.7617 17 6 0.2993 -2.3432 -3.7508 18 6 -0.3830 -2.3595 -2.5485 19 6 -1.7652 -2.3818 -2.5386 20 6 -2.4648 -2.3962 -3.7307 21 6 -1.7824 -2.3852 -4.9328 22 6 -0.4004 -2.3590 -4.9428 23 6 1.8552 -0.0861 -4.8903 24 6 2.3386 1.3611 -4.7772 25 6 3.8646 1.3823 -4.6692 26 6 4.2987 0.6009 -3.4273 27 6 3.8154 -0.8463 -3.5405 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9026 -0.5288 4.4374 32 1 1.0866 0.4906 -2.5451 33 1 2.1709 -2.7477 -4.6930 34 1 2.1865 -2.8915 -2.9188 35 1 0.1638 -2.3520 -1.6172 36 1 -2.2983 -2.3908 -1.5994 37 1 -3.5446 -2.4164 -3.7229 38 1 -2.3290 -2.3969 -5.8642 39 1 0.1328 -2.3500 -5.8820 40 1 2.2891 -0.5453 -5.7786 41 1 0.7680 -0.1010 -4.9673 42 1 1.9050 1.8206 -3.8890 43 1 2.0289 1.9178 -5.6617 44 1 4.2090 2.4132 -4.5890 45 1 4.2981 0.9228 -5.5574 46 1 3.8652 1.0604 -2.5391 47 1 5.3859 0.6164 -3.3501 48 1 4.1250 -1.4029 -2.6560 49 1 4.2489 -1.3058 -4.4287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597516032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:59 Heat of formation + Delta-G solvation = -29.733888 kcal Electronic energy + Delta-G solvation = -28448.000501 eV Core-core repulsion = 24952.935996 eV Total energy + Delta-G solvation = -3495.064505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.59209 -38.65136 -37.50742 -34.02143 -33.74774 -32.18262 -31.08941 -30.80311 -30.55209 -29.37358 -25.99080 -25.11696 -23.23697 -22.78277 -22.21833 -21.77068 -20.46197 -19.74121 -18.57410 -16.85346 -16.48012 -16.29472 -15.44943 -15.25709 -14.97225 -14.77452 -14.44030 -14.35716 -13.86788 -13.65249 -13.26208 -13.15817 -13.09956 -12.76460 -12.63192 -12.29187 -12.19892 -12.13450 -12.02024 -11.89376 -11.53115 -11.38863 -11.04535 -11.00985 -10.87007 -10.70506 -10.57606 -10.48917 -10.24789 -10.06110 -9.95690 -9.60670 -9.07013 -8.75731 -8.61408 -8.57624 -8.40316 -8.27180 -6.03496 -4.03056 1.52766 1.58677 3.23804 3.31943 3.37049 3.64462 3.84094 3.96090 4.39228 4.69189 4.83156 4.83655 4.98759 5.03840 5.15087 5.23186 5.26524 5.29406 5.41940 5.46063 5.55905 5.59859 5.63400 5.68714 5.71084 5.78210 5.86893 5.91781 6.01176 6.09717 6.10063 6.14150 6.17838 6.22206 6.26551 6.33257 6.38865 6.44648 6.48593 6.53132 6.60757 6.64049 6.73551 6.77698 6.89140 7.15853 7.20374 7.22691 7.58936 8.24094 8.58867 9.15080 9.22086 9.56582 11.09467 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.005930 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.038513 B = 4720.580510 C = 6177.305755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 H 0.048 0.952 4 C -0.501 4.501 5 H 0.094 0.906 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.882 3.118 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.268 1.268 12 C 0.533 3.467 13 O -0.528 6.528 14 N -0.733 5.733 15 C 0.192 3.808 16 C -0.096 4.096 17 C -0.065 4.065 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.131 4.131 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.392 0.608 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.092 0.908 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 2.546 -20.169 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.066 0.934 4 C -0.539 4.539 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.713 3.287 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.322 3.678 13 O -0.403 6.403 14 N -0.387 5.387 15 C 0.106 3.894 16 C -0.134 4.134 17 C -0.065 4.065 18 C -0.119 4.119 19 C -0.136 4.136 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.154 4.154 26 C -0.154 4.154 27 C -0.169 4.169 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.226 0.774 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.974 1.822 -19.871 20.346 hybrid contribution -1.083 1.256 0.224 1.674 sum -5.057 3.078 -19.646 20.519 Atomic orbital electron populations 1.22149 0.97575 1.01339 0.99096 1.19319 0.93036 0.97487 0.93015 0.93386 1.20933 1.31871 1.13975 0.87169 0.88829 1.24974 0.95844 0.96442 0.95863 1.69878 1.45579 1.40173 0.97835 0.86951 0.80749 0.84035 0.76995 1.20639 1.22432 1.19336 1.21061 0.78932 0.84004 0.83821 1.90512 1.37605 1.25746 1.86439 1.46313 1.49112 1.37922 1.05326 1.20057 0.92915 0.91272 0.85190 1.21110 0.91208 0.97507 1.03602 1.19805 0.95563 0.98297 0.92853 1.21340 0.94140 0.97978 0.98459 1.21198 0.94512 0.99894 0.98006 1.21058 0.99436 1.01619 0.92724 1.21015 0.94359 1.01511 0.97619 1.20994 0.94045 1.01761 0.97352 1.21854 1.01341 0.95543 0.97116 1.21522 0.96159 0.96365 1.01589 1.21527 0.95605 0.99885 0.98397 1.21460 1.00115 0.95662 0.98124 1.21948 0.94147 0.97368 1.03469 0.94965 0.92413 0.93487 0.92657 0.77385 0.91186 0.88569 0.85366 0.86307 0.86753 0.86781 0.86688 0.91045 0.91168 0.91821 0.92283 0.92460 0.92414 0.91521 0.92405 0.88931 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.53 37.16 0.32 -2.59 16 2 C -0.01 -0.16 2.24 -92.92 -0.21 -0.36 16 3 H 0.05 1.09 7.20 -51.93 -0.37 0.71 16 4 C -0.50 -14.12 8.96 -34.44 -0.31 -14.43 16 5 H 0.09 3.00 7.00 -52.49 -0.37 2.64 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.88 21.33 24.37 -169.99 -4.14 17.19 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.18 16 10 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.27 -6.06 6.53 56.52 0.37 -5.69 16 12 C 0.53 10.73 4.71 -10.98 -0.05 10.68 16 13 O -0.53 -12.29 11.75 5.56 0.07 -12.22 16 14 N -0.73 -11.25 2.80 -47.61 -0.13 -11.38 16 15 C 0.19 2.55 0.35 -131.82 -0.05 2.50 16 16 C -0.10 -1.33 4.21 -27.88 -0.12 -1.45 16 17 C -0.07 -0.90 4.32 -104.62 -0.45 -1.35 16 18 C -0.10 -1.57 8.70 -39.58 -0.34 -1.91 16 19 C -0.12 -1.64 10.05 -39.59 -0.40 -2.03 16 20 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 21 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 22 C -0.12 -1.45 8.33 -39.59 -0.33 -1.78 16 23 C -0.12 -1.27 4.40 -26.73 -0.12 -1.39 16 24 C -0.12 -1.20 5.75 -26.73 -0.15 -1.35 16 25 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 26 C -0.12 -1.52 5.76 -26.73 -0.15 -1.67 16 27 C -0.13 -1.83 4.44 -26.73 -0.12 -1.95 16 28 H 0.03 0.53 7.45 -51.93 -0.39 0.14 16 29 H 0.06 1.17 7.23 -51.93 -0.38 0.79 16 30 H 0.05 1.00 3.27 -51.93 -0.17 0.83 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.39 5.49 6.77 -40.82 -0.28 5.22 16 33 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.10 1.65 6.45 -51.93 -0.34 1.31 16 35 H 0.13 2.36 5.57 -52.49 -0.29 2.06 16 36 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.11 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 42 H 0.06 0.69 6.96 -51.93 -0.36 0.33 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 1.01 7.51 -51.93 -0.39 0.62 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 1.63 6.01 -51.93 -0.31 1.31 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -31.07 360.96 -9.34 -40.41 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.80 Total: 9.66 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.53 Total: -22.35 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.64 Total: -38.13 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.07 -9.34 -40.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597516032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.673 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds