Wall clock time and date at job start Tue Mar 31 2020 11:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46820 * 2 1 4 4 C 1.50697 * 109.47198 * 120.00809 * 2 1 3 5 5 H 1.07994 * 120.00130 * 120.00100 * 4 2 1 6 6 C 1.37882 * 119.99650 * 299.99744 * 4 2 1 7 7 N 1.31506 * 119.99883 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99934 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47459 * 90.00104 * 8 6 4 10 10 H 1.48502 * 109.46926 * 209.99971 * 8 6 4 11 11 H 1.48504 * 109.47307 * 329.99555 * 8 6 4 12 12 C 1.50703 * 109.46910 * 240.00382 * 2 1 3 13 13 O 1.21277 * 120.00046 * 239.99967 * 12 2 1 14 14 N 1.34780 * 119.99975 * 60.00140 * 12 2 1 15 15 C 1.46504 * 120.00177 * 174.60878 * 14 12 2 16 16 C 1.52997 * 109.47072 * 64.89304 * 15 14 12 17 17 C 1.50701 * 109.47169 * 55.25366 * 16 15 14 18 18 C 1.38242 * 119.99685 * 274.49061 * 17 16 15 19 19 C 1.38241 * 119.99020 * 179.80950 * 18 17 16 20 20 C 1.38225 * 120.00407 * 0.39513 * 19 18 17 21 21 C 1.38229 * 120.00255 * 359.85643 * 20 19 18 22 22 C 1.38231 * 120.00024 * 359.95714 * 21 20 19 23 23 C 1.52994 * 109.47393 * 184.89386 * 15 14 12 24 24 C 1.53005 * 109.46956 * 60.00101 * 23 15 14 25 25 C 1.52996 * 109.47544 * 60.00096 * 24 23 15 26 26 C 1.53003 * 109.46663 * 300.00266 * 25 24 23 27 27 C 1.52997 * 109.47480 * 59.99798 * 26 25 24 28 28 H 1.09003 * 109.47269 * 59.99772 * 1 2 3 29 29 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47349 * 299.99763 * 1 2 3 31 31 H 0.96996 * 120.00001 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00068 * 354.61256 * 14 12 2 33 33 H 1.08999 * 109.47430 * 175.25383 * 16 15 14 34 34 H 1.09002 * 109.46930 * 295.25787 * 16 15 14 35 35 H 1.07994 * 120.00131 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.99386 * 180.22848 * 19 18 17 37 37 H 1.08003 * 119.99874 * 179.83637 * 20 19 18 38 38 H 1.08004 * 120.00577 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00303 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.47102 * 179.97438 * 23 15 14 41 41 H 1.09005 * 109.47224 * 300.00485 * 23 15 14 42 42 H 1.08998 * 109.46779 * 299.99664 * 24 23 15 43 43 H 1.08997 * 109.46917 * 180.02562 * 24 23 15 44 44 H 1.08994 * 109.47706 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.46978 * 59.99696 * 25 24 23 46 46 H 1.08999 * 109.46958 * 299.99442 * 26 25 24 47 47 H 1.09005 * 109.46666 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.47039 * 179.97438 * 27 26 25 49 49 H 1.08999 * 109.47316 * 59.99863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6992 -0.2396 2.4827 7 7 2.1372 -0.8599 3.5564 8 14 0.6248 1.2788 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9759 1.9947 3.9069 11 1 0.8471 2.1764 1.4922 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.2893 -0.8673 -3.6486 16 6 1.8060 -2.3145 -3.7617 17 6 0.2993 -2.3432 -3.7508 18 6 -0.3830 -2.3595 -2.5485 19 6 -1.7652 -2.3818 -2.5386 20 6 -2.4648 -2.3962 -3.7307 21 6 -1.7824 -2.3852 -4.9328 22 6 -0.4004 -2.3590 -4.9428 23 6 1.8552 -0.0861 -4.8903 24 6 2.3386 1.3611 -4.7772 25 6 3.8646 1.3823 -4.6692 26 6 4.2987 0.6009 -3.4273 27 6 3.8154 -0.8463 -3.5405 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9026 -0.5288 4.4374 32 1 1.0866 0.4906 -2.5451 33 1 2.1709 -2.7477 -4.6930 34 1 2.1865 -2.8915 -2.9188 35 1 0.1638 -2.3520 -1.6172 36 1 -2.2983 -2.3908 -1.5994 37 1 -3.5446 -2.4164 -3.7229 38 1 -2.3290 -2.3969 -5.8642 39 1 0.1328 -2.3500 -5.8820 40 1 2.2891 -0.5453 -5.7786 41 1 0.7680 -0.1010 -4.9673 42 1 1.9050 1.8206 -3.8890 43 1 2.0289 1.9178 -5.6617 44 1 4.2090 2.4132 -4.5890 45 1 4.2981 0.9228 -5.5574 46 1 3.8652 1.0604 -2.5391 47 1 5.3859 0.6164 -3.3501 48 1 4.1250 -1.4029 -2.6560 49 1 4.2489 -1.3058 -4.4287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597516032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:57 Heat of formation + Delta-G solvation = -47.782277 kcal Electronic energy + Delta-G solvation = -28448.783138 eV Core-core repulsion = 24952.935996 eV Total energy + Delta-G solvation = -3495.847142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82493 -39.75874 -38.83491 -35.77977 -35.04031 -33.79959 -32.73153 -31.78094 -31.55288 -30.49554 -27.11851 -26.98411 -24.95829 -23.76130 -23.19496 -22.79466 -21.61583 -21.05440 -19.88349 -18.79778 -17.88785 -17.54953 -16.73119 -16.59573 -16.21485 -16.05030 -15.69492 -15.59069 -15.13296 -15.03982 -14.63124 -14.35046 -14.22958 -14.20383 -14.01708 -13.71078 -13.43480 -13.24149 -13.15003 -13.04220 -12.80597 -12.74844 -12.51677 -12.47742 -12.16017 -11.97938 -11.81888 -11.67227 -11.48584 -11.42841 -11.20524 -11.08193 -10.98512 -10.76551 -10.10540 -9.83641 -9.68254 -9.40337 -8.27335 -6.33409 0.55337 0.59670 1.29538 1.35616 1.46534 2.03041 2.32070 2.49589 2.97115 3.06608 3.68491 3.86747 3.90195 4.06171 4.10051 4.20022 4.24500 4.28872 4.36490 4.41116 4.45216 4.52176 4.57909 4.61439 4.64236 4.65731 4.74744 4.78083 4.83433 4.89887 4.90698 5.00493 5.07001 5.12169 5.21515 5.25181 5.26311 5.30185 5.38713 5.41651 5.44221 5.50643 5.55523 5.57533 5.67308 5.73629 5.82726 5.96220 6.23590 6.29154 6.74198 6.96353 7.28329 7.68393 8.90323 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.005930 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.038513 B = 4720.580510 C = 6177.305755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.011 4.011 3 H 0.057 0.943 4 C -0.510 4.510 5 H 0.031 0.969 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.955 3.045 9 H -0.263 1.263 10 H -0.300 1.300 11 H -0.236 1.236 12 C 0.538 3.462 13 O -0.570 6.570 14 N -0.710 5.710 15 C 0.191 3.809 16 C -0.093 4.093 17 C -0.073 4.073 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.110 4.110 26 C -0.116 4.116 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.044 0.956 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 5.163 -25.002 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.033 4.033 3 H 0.075 0.925 4 C -0.549 4.549 5 H 0.050 0.950 6 C -0.189 4.189 7 N -0.593 5.593 8 Si 0.780 3.220 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.159 1.159 12 C 0.326 3.674 13 O -0.449 6.449 14 N -0.363 5.363 15 C 0.105 3.895 16 C -0.131 4.131 17 C -0.073 4.073 18 C -0.146 4.146 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.133 4.133 23 C -0.148 4.148 24 C -0.156 4.156 25 C -0.147 4.147 26 C -0.154 4.154 27 C -0.169 4.169 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.684 4.460 -24.763 26.035 hybrid contribution -0.156 0.282 1.698 1.729 sum -6.840 4.742 -23.065 24.521 Atomic orbital electron populations 1.21996 0.95040 1.01335 1.00805 1.19252 0.94979 0.97108 0.91976 0.92544 1.21063 1.31105 1.12560 0.90148 0.95030 1.25968 0.97505 1.00452 0.95012 1.70072 1.47834 1.42751 0.98627 0.85771 0.78912 0.79468 0.77805 1.18870 1.22745 1.15899 1.20596 0.78574 0.83372 0.84850 1.90520 1.39633 1.27600 1.87139 1.46014 1.48270 1.37439 1.04546 1.20279 0.92194 0.91555 0.85476 1.21027 0.91829 0.97366 1.02868 1.19774 0.95126 0.99200 0.93217 1.21107 0.94918 1.00922 0.97607 1.21256 0.93855 1.00787 0.99138 1.21351 1.00713 1.00399 0.92125 1.21433 0.94261 0.99392 0.98584 1.21264 0.94527 1.00263 0.97275 1.21828 1.01943 0.95419 0.95630 1.21548 0.95455 0.96129 1.02422 1.21491 0.96262 0.99868 0.97091 1.21448 0.99883 0.95239 0.98806 1.21899 0.95073 0.97619 1.02285 0.90619 0.93514 0.94008 0.92550 0.76151 0.88561 0.93225 0.89699 0.86709 0.84327 0.83326 0.83703 0.88582 0.90342 0.92799 0.89580 0.91625 0.90625 0.94325 0.92653 0.93725 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.53 71.98 0.61 -4.74 16 2 C -0.01 -0.53 2.24 -12.29 -0.03 -0.56 16 3 H 0.06 2.54 7.20 -2.39 -0.02 2.53 16 4 C -0.51 -30.87 8.96 25.60 0.23 -30.64 16 5 H 0.03 2.25 7.00 -2.91 -0.02 2.23 16 6 C 0.01 0.41 5.45 84.66 0.46 0.87 16 7 N -0.95 -62.10 13.96 21.45 0.30 -61.80 16 8 Si 0.95 44.50 24.37 68.60 1.67 46.17 16 9 H -0.26 -11.52 6.87 99.48 0.68 -10.83 16 10 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.24 -9.68 6.53 99.48 0.65 -9.03 16 12 C 0.54 22.99 4.71 87.66 0.41 23.40 16 13 O -0.57 -29.42 11.75 -3.02 -0.04 -29.45 16 14 N -0.71 -21.81 2.80 -422.92 -1.18 -22.99 16 15 C 0.19 4.86 0.35 3.60 0.00 4.87 16 16 C -0.09 -2.56 4.21 29.85 0.13 -2.43 16 17 C -0.07 -1.92 4.32 -19.86 -0.09 -2.01 16 18 C -0.13 -4.02 8.70 22.27 0.19 -3.83 16 19 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 20 C -0.13 -2.64 10.05 22.26 0.22 -2.42 16 21 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 22 C -0.12 -2.23 8.33 22.27 0.19 -2.05 16 23 C -0.11 -1.85 4.40 30.59 0.13 -1.72 16 24 C -0.12 -1.87 5.75 30.59 0.18 -1.69 16 25 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 26 C -0.12 -2.99 5.76 30.59 0.18 -2.81 16 27 C -0.13 -3.68 4.44 30.59 0.14 -3.54 16 28 H 0.08 2.33 7.45 -2.39 -0.02 2.31 16 29 H 0.05 1.95 7.23 -2.39 -0.02 1.93 16 30 H 0.04 1.70 3.27 -2.39 -0.01 1.70 16 31 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 32 H 0.40 10.60 6.77 -92.71 -0.63 9.97 16 33 H 0.10 2.08 8.05 -2.39 -0.02 2.06 16 34 H 0.05 1.85 6.45 -2.39 -0.02 1.83 16 35 H 0.08 3.41 5.57 -2.91 -0.02 3.40 16 36 H 0.11 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.26 6.50 -2.38 -0.02 1.24 16 42 H 0.05 0.97 6.96 -2.39 -0.02 0.95 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.04 1.19 7.51 -2.39 -0.02 1.17 16 47 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.04 1.70 6.01 -2.39 -0.01 1.69 16 49 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -77.40 360.96 4.57 -72.83 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.24 Total: 31.53 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 3.59 Total: -36.29 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -0.89 Total: -84.79 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.04 Total: -29.45 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Total: -77.40 4.57 -72.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597516032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.049 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds