Wall clock time and date at job start Tue Mar 31 2020 11:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47037 * 2 1 4 4 C 1.53001 * 109.46847 * 120.00493 * 2 1 3 5 5 C 1.53000 * 109.46886 * 294.99397 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.62638 * 359.71455 * 8 6 5 10 10 C 1.53627 * 108.54183 * 126.37295 * 9 8 6 11 11 C 1.53040 * 109.24108 * 54.85576 * 10 9 8 12 12 C 1.53042 * 109.53871 * 298.50936 * 11 10 9 13 13 H 1.09000 * 109.50220 * 301.42045 * 12 11 10 14 14 C 1.50698 * 109.49928 * 181.31422 * 12 11 10 15 15 H 1.07999 * 120.00406 * 240.16474 * 14 12 11 16 16 C 1.37877 * 119.99751 * 60.16998 * 14 12 11 17 17 N 1.31513 * 120.00113 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00014 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47463 * 89.99422 * 18 16 14 20 20 H 1.48500 * 109.47331 * 209.99549 * 18 16 14 21 21 H 1.48497 * 109.47157 * 329.99409 * 18 16 14 22 22 C 1.46920 * 120.63268 * 180.02562 * 8 6 5 23 23 C 1.50701 * 109.46750 * 239.99978 * 2 1 3 24 24 C 1.38234 * 120.00228 * 299.73154 * 23 2 1 25 25 C 1.38238 * 119.99922 * 179.74890 * 24 23 2 26 26 C 1.38234 * 119.99621 * 0.54132 * 25 24 23 27 27 C 1.38234 * 120.00225 * 359.70869 * 26 25 24 28 28 C 1.38227 * 120.00267 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.46932 * 59.99359 * 1 2 3 30 30 H 1.08994 * 109.47037 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46480 * 299.99905 * 1 2 3 32 32 H 1.09001 * 109.46652 * 174.99742 * 4 2 1 33 33 H 1.08992 * 109.47514 * 54.99831 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 36 36 H 1.09005 * 109.58858 * 246.20434 * 9 8 6 37 37 H 1.08995 * 109.58867 * 6.63230 * 9 8 6 38 38 H 1.08999 * 109.63425 * 294.86802 * 10 9 8 39 39 H 1.09002 * 109.43315 * 174.72619 * 10 9 8 40 40 H 1.08995 * 109.46070 * 178.49571 * 11 10 9 41 41 H 1.08999 * 109.46244 * 58.53099 * 11 10 9 42 42 H 0.96996 * 120.00347 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.58920 * 353.36599 * 22 8 6 44 44 H 1.08997 * 109.58981 * 113.79581 * 22 8 6 45 45 H 1.07993 * 119.99892 * 359.97438 * 24 23 2 46 46 H 1.07997 * 120.00228 * 180.27301 * 25 24 23 47 47 H 1.08003 * 119.99748 * 179.72530 * 26 25 24 48 48 H 1.08011 * 119.99801 * 179.97438 * 27 26 25 49 49 H 1.07997 * 120.00396 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6353 0.0688 2.4953 6 6 2.1381 -0.6414 3.7257 7 8 2.7586 -1.6777 3.6167 8 7 1.8974 -0.1254 4.9473 9 6 1.1516 1.1319 5.0951 10 6 -0.0206 0.8941 6.0592 11 6 0.5156 0.3234 7.3741 12 6 1.1999 -1.0194 7.1080 13 1 0.4868 -1.7076 6.6543 14 6 1.6992 -1.5959 8.4078 15 1 2.7528 -1.7910 8.5427 16 6 0.8108 -1.8742 9.4248 17 7 -0.4722 -1.6362 9.2607 18 14 1.4296 -2.5881 11.0362 19 1 1.7679 -1.4837 11.9695 20 1 0.3725 -3.4392 11.6390 21 1 2.6405 -3.4091 10.7813 22 6 2.3816 -0.8059 6.1560 23 6 2.0323 -0.7104 -1.2305 24 6 1.7029 -2.0355 -1.4465 25 6 2.1594 -2.6856 -2.5778 26 6 2.9544 -2.0139 -3.4875 27 6 3.2881 -0.6903 -3.2689 28 6 2.8272 -0.0386 -2.1404 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 3.1263 -0.7996 1.2055 33 1 1.6054 -1.7198 1.2951 34 1 2.0700 1.0674 2.4494 35 1 0.5490 0.1471 2.5390 36 1 1.8096 1.9018 5.4984 37 1 0.7698 1.4466 4.1240 38 1 -0.7223 0.1878 5.6155 39 1 -0.5283 1.8390 6.2529 40 1 -0.3102 0.1783 8.0705 41 1 1.2359 1.0189 7.8049 42 1 -1.0971 -1.8317 9.9763 43 1 2.8115 -1.7702 5.8851 44 1 3.1375 -0.1906 6.6439 45 1 1.0860 -2.5617 -0.7332 46 1 1.8984 -3.7195 -2.7488 47 1 3.3147 -2.5231 -4.3692 48 1 3.9097 -0.1656 -3.9795 49 1 3.0882 0.9953 -1.9694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:12 Heat of formation + Delta-G solvation = -40.667456 kcal Electronic energy + Delta-G solvation = -25969.166999 eV Core-core repulsion = 22473.628379 eV Total energy + Delta-G solvation = -3495.538620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.92564 -39.39714 -36.92710 -35.85542 -33.50157 -31.61843 -31.20976 -31.05541 -30.10722 -28.90272 -25.83426 -25.01877 -24.14681 -22.97437 -22.30704 -21.65677 -20.09312 -19.57375 -18.23890 -17.16485 -16.70199 -16.16869 -15.74688 -15.44072 -15.07537 -14.96350 -14.57872 -13.98410 -13.88310 -13.68071 -13.47345 -13.46358 -13.23380 -12.83822 -12.64264 -12.54060 -12.40325 -12.08077 -11.99104 -11.82830 -11.62897 -11.34448 -10.98840 -10.98151 -10.86136 -10.78610 -10.70202 -10.54633 -10.28748 -9.95865 -9.80436 -9.46535 -9.24177 -9.07630 -8.85183 -8.80355 -8.38948 -7.87120 -6.02443 -4.09397 1.20340 1.24497 3.10257 3.29192 3.36101 3.39864 3.54882 3.66169 4.41949 4.46209 4.58630 4.79940 4.83223 4.92366 4.98352 5.10161 5.20595 5.27335 5.27717 5.32569 5.35802 5.39660 5.45840 5.59722 5.63260 5.75428 5.76849 5.80702 5.89143 5.90519 5.95808 6.12344 6.17427 6.29856 6.33096 6.33782 6.36271 6.41236 6.48627 6.53213 6.66878 6.81498 6.85130 6.98967 7.17088 7.33400 7.68699 7.92006 8.04656 8.07372 8.37559 8.69710 8.94447 9.55471 11.03127 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.002379 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.733640 B =11768.379690 C =12211.827738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 H 0.078 0.922 4 C -0.094 4.094 5 C -0.140 4.140 6 C 0.506 3.494 7 O -0.553 6.553 8 N -0.605 5.605 9 C 0.109 3.891 10 C -0.135 4.135 11 C -0.113 4.113 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.116 3.884 23 C -0.070 4.070 24 C -0.112 4.112 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.260 0.740 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 6.878 -22.029 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 H 0.096 0.904 4 C -0.132 4.132 5 C -0.180 4.180 6 C 0.294 3.706 7 O -0.432 6.432 8 N -0.337 5.337 9 C -0.014 4.014 10 C -0.173 4.173 11 C -0.151 4.151 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.005 4.005 23 C -0.070 4.070 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.137 4.137 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.855 6.312 -21.973 22.937 hybrid contribution 0.208 -0.265 0.983 1.039 sum 2.063 6.047 -20.991 21.941 Atomic orbital electron populations 1.21917 0.94201 1.02401 1.01870 1.20230 0.96103 0.99030 0.91909 0.90376 1.21385 1.01893 0.99060 0.90814 1.21747 1.02729 1.00298 0.93236 1.20577 0.80016 0.85334 0.84644 1.90658 1.41886 1.24118 1.86498 1.48330 1.54380 1.24423 1.06602 1.21829 0.94126 0.85708 0.99756 1.22077 0.96519 1.00354 0.98325 1.21630 1.01730 0.97052 0.94658 1.18976 0.92041 0.93648 0.93221 0.95307 1.21085 0.93942 1.41774 0.98408 0.92501 1.24939 0.94838 0.95439 0.98641 1.69870 1.01625 1.48300 1.33026 0.86578 0.78585 0.79117 0.83648 1.20693 1.21241 1.19857 1.21984 0.98347 0.96675 0.83446 1.19896 0.97071 0.94262 0.95816 1.21070 1.00114 0.94354 0.97426 1.21162 0.98056 0.99873 0.94610 1.21123 0.99040 0.94944 0.99564 1.21115 1.00147 0.95007 0.97648 1.21076 0.98224 0.99890 0.94535 0.92685 0.92295 0.91865 0.91133 0.90933 0.89410 0.88934 0.91995 0.91091 0.92373 0.92541 0.88671 0.94617 0.92988 0.90370 0.92859 0.85936 0.86187 0.86390 0.86312 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.76 37.16 0.33 -0.94 16 2 C -0.05 -0.51 2.56 -91.77 -0.24 -0.75 16 3 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 4 C -0.09 -1.12 3.71 -26.73 -0.10 -1.22 16 5 C -0.14 -1.73 3.80 -27.88 -0.11 -1.83 16 6 C 0.51 8.99 7.70 -10.98 -0.08 8.91 16 7 O -0.55 -11.92 15.39 5.56 0.09 -11.84 16 8 N -0.61 -11.11 2.97 -172.48 -0.51 -11.62 16 9 C 0.11 1.64 6.37 -3.48 -0.02 1.62 16 10 C -0.13 -2.34 6.10 -26.39 -0.16 -2.50 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C 0.04 0.99 2.25 -91.63 -0.21 0.79 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.51 -13.95 8.56 -34.44 -0.29 -14.25 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.12 2.54 5.66 -3.69 -0.02 2.52 16 23 C -0.07 -0.71 4.78 -104.62 -0.50 -1.21 16 24 C -0.11 -1.15 8.76 -39.58 -0.35 -1.50 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 26 C -0.13 -1.14 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 28 C -0.12 -1.12 9.67 -39.58 -0.38 -1.50 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 7.41 -51.93 -0.38 0.14 16 31 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 32 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.07 0.97 7.51 -51.93 -0.39 0.58 16 34 H 0.09 0.90 7.93 -51.93 -0.41 0.48 16 35 H 0.09 1.02 6.13 -51.93 -0.32 0.70 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 2.41 6.05 -51.93 -0.31 2.09 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 1.85 7.01 -51.93 -0.36 1.48 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.12 1.21 7.16 -52.49 -0.38 0.83 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 48 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 49 H 0.12 0.92 7.95 -52.49 -0.42 0.50 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -30.81 382.46 -10.83 -41.64 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.22 Total: 1.66 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.55 Total: -17.41 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.12 Total: -35.96 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.81 -10.83 -41.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.977 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds