Wall clock time and date at job start Tue Mar 31 2020 11:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47037 * 2 1 4 4 C 1.53001 * 109.46847 * 120.00493 * 2 1 3 5 5 C 1.53000 * 109.46886 * 294.99397 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.62638 * 359.71455 * 8 6 5 10 10 C 1.53627 * 108.54183 * 126.37295 * 9 8 6 11 11 C 1.53040 * 109.24108 * 54.85576 * 10 9 8 12 12 C 1.53042 * 109.53871 * 298.50936 * 11 10 9 13 13 H 1.09000 * 109.50220 * 301.42045 * 12 11 10 14 14 C 1.50698 * 109.49928 * 181.31422 * 12 11 10 15 15 H 1.07999 * 120.00406 * 240.16474 * 14 12 11 16 16 C 1.37877 * 119.99751 * 60.16998 * 14 12 11 17 17 N 1.31513 * 120.00113 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00014 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47463 * 89.99422 * 18 16 14 20 20 H 1.48500 * 109.47331 * 209.99549 * 18 16 14 21 21 H 1.48497 * 109.47157 * 329.99409 * 18 16 14 22 22 C 1.46920 * 120.63268 * 180.02562 * 8 6 5 23 23 C 1.50701 * 109.46750 * 239.99978 * 2 1 3 24 24 C 1.38234 * 120.00228 * 299.73154 * 23 2 1 25 25 C 1.38238 * 119.99922 * 179.74890 * 24 23 2 26 26 C 1.38234 * 119.99621 * 0.54132 * 25 24 23 27 27 C 1.38234 * 120.00225 * 359.70869 * 26 25 24 28 28 C 1.38227 * 120.00267 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.46932 * 59.99359 * 1 2 3 30 30 H 1.08994 * 109.47037 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46480 * 299.99905 * 1 2 3 32 32 H 1.09001 * 109.46652 * 174.99742 * 4 2 1 33 33 H 1.08992 * 109.47514 * 54.99831 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 36 36 H 1.09005 * 109.58858 * 246.20434 * 9 8 6 37 37 H 1.08995 * 109.58867 * 6.63230 * 9 8 6 38 38 H 1.08999 * 109.63425 * 294.86802 * 10 9 8 39 39 H 1.09002 * 109.43315 * 174.72619 * 10 9 8 40 40 H 1.08995 * 109.46070 * 178.49571 * 11 10 9 41 41 H 1.08999 * 109.46244 * 58.53099 * 11 10 9 42 42 H 0.96996 * 120.00347 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.58920 * 353.36599 * 22 8 6 44 44 H 1.08997 * 109.58981 * 113.79581 * 22 8 6 45 45 H 1.07993 * 119.99892 * 359.97438 * 24 23 2 46 46 H 1.07997 * 120.00228 * 180.27301 * 25 24 23 47 47 H 1.08003 * 119.99748 * 179.72530 * 26 25 24 48 48 H 1.08011 * 119.99801 * 179.97438 * 27 26 25 49 49 H 1.07997 * 120.00396 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6353 0.0688 2.4953 6 6 2.1381 -0.6414 3.7257 7 8 2.7586 -1.6777 3.6167 8 7 1.8974 -0.1254 4.9473 9 6 1.1516 1.1319 5.0951 10 6 -0.0206 0.8941 6.0592 11 6 0.5156 0.3234 7.3741 12 6 1.1999 -1.0194 7.1080 13 1 0.4868 -1.7076 6.6543 14 6 1.6992 -1.5959 8.4078 15 1 2.7528 -1.7910 8.5427 16 6 0.8108 -1.8742 9.4248 17 7 -0.4722 -1.6362 9.2607 18 14 1.4296 -2.5881 11.0362 19 1 1.7679 -1.4837 11.9695 20 1 0.3725 -3.4392 11.6390 21 1 2.6405 -3.4091 10.7813 22 6 2.3816 -0.8059 6.1560 23 6 2.0323 -0.7104 -1.2305 24 6 1.7029 -2.0355 -1.4465 25 6 2.1594 -2.6856 -2.5778 26 6 2.9544 -2.0139 -3.4875 27 6 3.2881 -0.6903 -3.2689 28 6 2.8272 -0.0386 -2.1404 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 3.1263 -0.7996 1.2055 33 1 1.6054 -1.7198 1.2951 34 1 2.0700 1.0674 2.4494 35 1 0.5490 0.1471 2.5390 36 1 1.8096 1.9018 5.4984 37 1 0.7698 1.4466 4.1240 38 1 -0.7223 0.1878 5.6155 39 1 -0.5283 1.8390 6.2529 40 1 -0.3102 0.1783 8.0705 41 1 1.2359 1.0189 7.8049 42 1 -1.0971 -1.8317 9.9763 43 1 2.8115 -1.7702 5.8851 44 1 3.1375 -0.1906 6.6439 45 1 1.0860 -2.5617 -0.7332 46 1 1.8984 -3.7195 -2.7488 47 1 3.3147 -2.5231 -4.3692 48 1 3.9097 -0.1656 -3.9795 49 1 3.0882 0.9953 -1.9694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:09 Heat of formation + Delta-G solvation = -55.519320 kcal Electronic energy + Delta-G solvation = -25969.811025 eV Core-core repulsion = 22473.628379 eV Total energy + Delta-G solvation = -3496.182645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -41.16646 -40.30222 -38.44988 -36.76589 -35.36219 -33.14352 -32.48462 -31.76049 -31.59896 -29.71457 -27.28009 -26.61303 -25.38271 -23.80430 -23.34823 -23.05902 -21.42118 -20.63312 -19.69437 -18.57581 -17.96886 -17.58488 -16.86766 -16.68094 -16.49846 -16.03964 -15.80357 -15.13886 -15.00898 -14.99101 -14.65488 -14.49848 -14.29159 -14.18066 -14.01934 -13.73593 -13.57449 -13.42446 -13.10282 -12.87857 -12.81685 -12.66041 -12.54479 -12.42940 -12.08018 -11.91775 -11.85178 -11.79779 -11.60458 -11.47566 -11.34120 -11.25897 -10.86730 -10.64478 -10.42431 -9.77084 -9.54099 -9.45210 -8.11915 -6.27085 0.50628 0.54909 1.39277 1.40545 1.50651 1.72469 2.17593 2.43147 2.93083 3.14318 3.60752 3.71328 3.90301 4.10280 4.17352 4.19263 4.24195 4.28204 4.32034 4.35921 4.46036 4.51246 4.55669 4.59741 4.63067 4.69971 4.71219 4.75356 4.85379 4.89280 4.99466 5.05441 5.07962 5.10379 5.13789 5.22544 5.24279 5.30956 5.39940 5.44322 5.49691 5.59686 5.60950 5.64387 5.67509 5.81625 5.93133 6.13886 6.18373 6.34211 6.62967 6.82589 7.29143 7.40967 8.91674 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.002379 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.733640 B =11768.379690 C =12211.827738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 H 0.099 0.901 4 C -0.087 4.087 5 C -0.128 4.128 6 C 0.497 3.503 7 O -0.601 6.601 8 N -0.610 5.610 9 C 0.109 3.891 10 C -0.128 4.128 11 C -0.107 4.107 12 C 0.041 3.959 13 H -0.015 1.015 14 C -0.539 4.539 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.129 3.871 23 C -0.085 4.085 24 C -0.132 4.132 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.128 4.128 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.116 0.884 46 H 0.130 0.870 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 9.543 -23.524 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 H 0.117 0.883 4 C -0.125 4.125 5 C -0.167 4.167 6 C 0.288 3.712 7 O -0.483 6.483 8 N -0.342 5.342 9 C -0.012 4.012 10 C -0.166 4.166 11 C -0.145 4.145 12 C 0.022 3.978 13 H 0.003 0.997 14 C -0.577 4.577 15 H 0.068 0.932 16 C -0.183 4.183 17 N -0.552 5.552 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.006 3.994 23 C -0.085 4.085 24 C -0.150 4.150 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.145 4.145 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.137 0.863 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.134 0.866 46 H 0.148 0.852 47 H 0.156 0.844 48 H 0.159 0.841 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.937 9.007 -23.481 25.224 hybrid contribution 0.190 -1.165 1.422 1.848 sum 2.127 7.841 -22.059 23.508 Atomic orbital electron populations 1.21919 0.93501 1.02041 1.02849 1.20167 0.96570 0.99461 0.90037 0.88252 1.21289 1.00551 0.98431 0.92270 1.21804 1.04006 1.01078 0.89807 1.21645 0.78959 0.84861 0.85748 1.90637 1.44034 1.26473 1.87197 1.48429 1.54701 1.25405 1.05645 1.22108 0.93078 0.84289 1.01759 1.21989 0.97409 1.01220 0.95948 1.21429 1.00292 0.95826 0.96952 1.18877 0.92204 0.94068 0.92617 0.99720 1.21448 0.93841 1.42516 0.99925 0.93152 1.25691 0.95035 0.95752 1.01798 1.70004 1.02481 1.48775 1.33917 0.85607 0.77961 0.78584 0.79819 1.19551 1.20851 1.19814 1.21509 0.97160 0.96003 0.84696 1.20064 0.97640 0.94283 0.96497 1.21194 1.00864 0.95025 0.97924 1.21403 0.98376 1.00627 0.94680 1.21435 0.98614 0.95320 1.00016 1.21462 1.00010 0.95103 0.97921 1.21365 0.97814 1.00870 0.94486 0.91805 0.93424 0.90701 0.93076 0.93318 0.85700 0.86631 0.90055 0.86257 0.93645 0.89156 0.92042 0.94487 0.92913 0.93370 0.92301 0.86635 0.85174 0.84443 0.84094 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.76 71.98 0.63 -1.53 16 2 C -0.04 -0.73 2.56 -11.54 -0.03 -0.76 16 3 H 0.10 1.25 7.88 -2.39 -0.02 1.23 16 4 C -0.09 -2.00 3.71 30.59 0.11 -1.88 16 5 C -0.13 -2.77 3.80 29.85 0.11 -2.65 16 6 C 0.50 17.31 7.70 87.66 0.67 17.98 16 7 O -0.60 -26.82 15.39 -3.02 -0.05 -26.87 16 8 N -0.61 -21.81 2.97 -817.98 -2.43 -24.24 16 9 C 0.11 2.89 6.37 86.51 0.55 3.44 16 10 C -0.13 -4.17 6.10 30.82 0.19 -3.99 16 11 C -0.11 -4.79 4.96 30.62 0.15 -4.64 16 12 C 0.04 2.13 2.25 -11.45 -0.03 2.10 16 13 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 14 C -0.54 -30.36 8.56 25.60 0.22 -30.14 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 16 C 0.02 0.91 5.30 84.65 0.45 1.36 16 17 N -0.91 -52.62 11.32 21.45 0.24 -52.38 16 18 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.13 5.80 5.66 86.38 0.49 6.29 16 23 C -0.08 -1.62 4.78 -19.86 -0.09 -1.71 16 24 C -0.13 -2.74 8.76 22.27 0.20 -2.55 16 25 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 26 C -0.14 -2.22 10.05 22.27 0.22 -2.00 16 27 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 28 C -0.13 -2.12 9.67 22.27 0.22 -1.91 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.81 7.41 -2.39 -0.02 0.79 16 31 H 0.07 0.92 6.56 -2.39 -0.02 0.91 16 32 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.05 1.33 7.51 -2.39 -0.02 1.31 16 34 H 0.13 1.87 7.93 -2.39 -0.02 1.85 16 35 H 0.12 2.05 6.13 -2.39 -0.01 2.03 16 36 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.12 2.07 5.93 -2.39 -0.01 2.06 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.06 3.18 6.05 -2.39 -0.01 3.16 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.05 2.41 7.01 -2.39 -0.02 2.40 16 44 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.12 2.43 7.16 -2.91 -0.02 2.41 16 46 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 49 H 0.14 1.69 7.95 -2.91 -0.02 1.67 16 Total: -1.00 -71.96 382.46 5.22 -66.74 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.91 Total: 17.20 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 4.51 Total: -26.59 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -2.18 Total: -76.61 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.96 5.22 -66.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.221 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds