Wall clock time and date at job start Tue Mar 31 2020 11:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99499 * 2 1 4 4 C 1.52992 * 109.47532 * 89.99676 * 3 2 1 5 5 C 1.52999 * 109.47200 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.46970 * 294.99799 * 5 4 3 7 7 C 1.52999 * 109.46970 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47164 * 60.00138 * 7 6 5 9 9 C 1.53001 * 109.47360 * 300.00216 * 8 7 6 10 10 C 1.52999 * 109.46855 * 59.99547 * 9 8 7 11 11 C 1.34775 * 120.00352 * 179.97438 * 2 1 3 12 12 O 1.21606 * 119.99815 * 185.49986 * 11 2 1 13 13 C 1.47428 * 119.99838 * 5.49486 * 11 2 1 14 14 C 1.39228 * 120.28504 * 46.75163 * 13 11 2 15 15 C 1.38222 * 120.09229 * 179.97438 * 14 13 11 16 16 C 1.38829 * 120.67744 * 0.02876 * 15 14 13 17 17 C 1.37602 * 120.56908 * 359.96947 * 16 15 14 18 18 C 1.40710 * 119.87996 * 359.75219 * 17 16 15 19 19 C 1.40887 * 120.32379 * 180.25072 * 18 17 16 20 20 H 1.08003 * 120.00211 * 148.92014 * 19 18 17 21 21 C 1.40278 * 120.00017 * 328.91577 * 19 18 17 22 22 N 1.30629 * 119.99689 * 159.75228 * 21 19 18 23 23 Si 1.86793 * 120.00256 * 339.74960 * 21 19 18 24 24 H 1.48505 * 109.47037 * 89.33360 * 23 21 19 25 25 H 1.48493 * 109.47352 * 209.33911 * 23 21 19 26 26 H 1.48500 * 109.46955 * 329.33927 * 23 21 19 27 27 H 1.09005 * 109.46706 * 95.13874 * 1 2 3 28 28 H 1.09003 * 109.46818 * 215.12679 * 1 2 3 29 29 H 1.08993 * 109.47598 * 335.13270 * 1 2 3 30 30 H 1.09000 * 109.46976 * 329.99056 * 3 2 1 31 31 H 1.09000 * 109.46713 * 209.99936 * 3 2 1 32 32 H 1.09006 * 109.46919 * 300.00020 * 4 3 2 33 33 H 1.09009 * 109.46940 * 59.99815 * 4 3 2 34 34 H 1.08999 * 109.47139 * 55.00533 * 5 4 3 35 35 H 1.09000 * 109.47341 * 300.00047 * 6 5 4 36 36 H 1.09002 * 109.47213 * 60.00124 * 6 5 4 37 37 H 1.08997 * 109.47618 * 300.00146 * 7 6 5 38 38 H 1.09005 * 109.47387 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.47366 * 179.97438 * 8 7 6 40 40 H 1.09000 * 109.47065 * 60.00003 * 8 7 6 41 41 H 1.09000 * 109.46858 * 299.99914 * 9 8 7 42 42 H 1.08993 * 109.47241 * 179.97438 * 9 8 7 43 43 H 1.08999 * 109.46770 * 180.02562 * 10 9 8 44 44 H 1.09000 * 109.47088 * 60.00508 * 10 9 8 45 45 H 1.07998 * 119.94877 * 359.95724 * 14 13 11 46 46 H 1.07999 * 119.65882 * 179.97438 * 15 14 13 47 47 H 1.07992 * 119.71499 * 179.97438 * 16 15 14 48 48 H 1.08000 * 120.05735 * 179.97438 * 17 16 15 49 49 H 0.96998 * 119.99693 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 1.4424 5 6 3.2178 3.0354 1.4423 6 6 4.6050 2.8228 0.8330 7 6 5.3707 4.1474 0.8335 8 6 5.5167 4.6515 2.2706 9 6 4.1295 4.8640 2.8801 10 6 3.3639 3.5394 2.8795 11 6 2.1390 -1.1671 0.0005 12 8 3.3508 -1.1694 0.1015 13 6 1.4070 -2.4411 -0.1212 14 6 0.4192 -2.5934 -1.0905 15 6 -0.2643 -3.7897 -1.2014 16 6 0.0220 -4.8504 -0.3526 17 6 0.9928 -4.7299 0.6151 18 6 1.7073 -3.5247 0.7451 19 6 2.7069 -3.3930 1.7292 20 1 3.5586 -2.7531 1.5515 21 6 2.5958 -4.0928 2.9399 22 7 3.6562 -4.3001 3.6740 23 14 0.9317 -4.7282 3.5022 24 1 0.7156 -6.0948 2.9628 25 1 0.8934 -4.7698 4.9861 26 1 -0.1369 -3.8250 3.0046 27 1 -0.3633 -0.0921 -1.0236 28 1 -0.3633 -0.8405 0.5913 29 1 -0.3634 0.9323 0.4321 30 1 1.6084 2.0284 -0.5140 31 1 3.1499 1.1385 -0.5138 32 1 1.4999 1.8409 1.9562 33 1 3.0415 0.9510 1.9563 34 1 2.6707 3.7711 0.8527 35 1 5.1520 2.0871 1.4226 36 1 4.5010 2.4632 -0.1908 37 1 4.8239 4.8834 0.2441 38 1 6.3589 3.9961 0.3989 39 1 6.0626 5.5950 2.2711 40 1 6.0636 3.9155 2.8600 41 1 3.5827 5.6000 2.2907 42 1 4.2336 5.2227 3.9040 43 1 2.3755 3.6909 3.3133 44 1 3.9108 2.8034 3.4689 45 1 0.1866 -1.7756 -1.7564 46 1 -1.0294 -3.9001 -1.9555 47 1 -0.5219 -5.7780 -0.4527 48 1 1.2085 -5.5602 1.2712 49 1 3.5795 -4.7844 4.5109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601030722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:01 Heat of formation + Delta-G solvation = -48.325735 kcal Electronic energy + Delta-G solvation = -26883.409798 eV Core-core repulsion = 23387.539090 eV Total energy + Delta-G solvation = -3495.870708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.47998 -38.62407 -37.08875 -35.10930 -33.72150 -32.90227 -30.77382 -30.51771 -30.14317 -28.09283 -26.17281 -25.29061 -23.76810 -22.56606 -21.84115 -21.10756 -20.51253 -19.68270 -18.56613 -17.44905 -16.50210 -15.88282 -15.46125 -15.10307 -14.82748 -14.57183 -14.23061 -14.14543 -13.97037 -13.73655 -13.46594 -13.16812 -12.79198 -12.58969 -12.39074 -12.30125 -12.09603 -11.98470 -11.88091 -11.75862 -11.59748 -11.46481 -11.09457 -11.01267 -10.84421 -10.77377 -10.57675 -10.45263 -10.37376 -10.14328 -10.01311 -9.88127 -9.83556 -9.17645 -8.64939 -8.01189 -7.77136 -7.66587 -7.02210 -4.54204 2.23958 2.61454 3.05690 3.12956 3.24268 3.63563 3.86991 3.93663 4.45543 4.67804 4.71119 4.77822 5.11516 5.17544 5.31235 5.35336 5.41014 5.46776 5.50330 5.53506 5.56653 5.64605 5.70046 5.76696 5.79568 5.88183 5.95746 5.98333 6.01112 6.05674 6.11144 6.15764 6.19608 6.20503 6.23231 6.32962 6.35914 6.43616 6.52887 6.59820 6.67154 6.80351 7.09088 7.13783 7.29945 7.47636 7.61756 7.79404 8.02862 8.15385 8.39827 8.62715 8.79730 9.20871 9.97118 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.003856 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.540298 B = 7259.854959 C = 8307.618829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.628 5.628 3 C 0.121 3.879 4 C -0.131 4.131 5 C -0.080 4.080 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.117 4.117 10 C -0.115 4.115 11 C 0.582 3.418 12 O -0.538 6.538 13 C -0.247 4.247 14 C -0.042 4.042 15 C -0.258 4.258 16 C -0.064 4.064 17 C -0.237 4.237 18 C 0.124 3.876 19 C -0.431 4.431 20 H 0.116 0.884 21 C 0.085 3.915 22 N -0.787 5.787 23 Si 0.909 3.091 24 H -0.264 1.264 25 H -0.288 1.288 26 H -0.247 1.247 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 13.997 -2.125 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.363 5.363 3 C -0.002 4.002 4 C -0.170 4.170 5 C -0.099 4.099 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.155 4.155 10 C -0.152 4.152 11 C 0.375 3.625 12 O -0.415 6.415 13 C -0.251 4.251 14 C -0.061 4.061 15 C -0.277 4.277 16 C -0.082 4.082 17 C -0.256 4.256 18 C 0.120 3.880 19 C -0.457 4.457 20 H 0.133 0.867 21 C -0.137 4.137 22 N -0.409 5.409 23 Si 0.734 3.266 24 H -0.190 1.190 25 H -0.215 1.215 26 H -0.171 1.171 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.124 0.876 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.267 13.919 -1.837 14.415 hybrid contribution -0.766 -0.407 0.389 0.951 sum -4.033 13.512 -1.448 14.175 Atomic orbital electron populations 1.21723 0.80319 1.02348 1.01099 1.47828 1.06470 1.05690 1.76265 1.21360 0.97402 0.84857 0.96554 1.22019 1.00247 0.96924 0.97832 1.21074 0.96017 0.96639 0.96168 1.21644 0.95494 0.96984 1.01355 1.21534 1.00108 0.97478 0.96469 1.21543 0.96993 1.00654 0.96600 1.21518 0.96117 0.97562 1.00300 1.21585 1.00027 0.96864 0.96770 1.18400 0.86803 0.83128 0.74193 1.90667 1.14455 1.87067 1.49275 1.19370 1.04606 0.93862 1.07285 1.20771 0.93322 0.96333 0.95631 1.20264 1.06636 0.95372 1.05430 1.20727 0.95815 0.96918 0.94752 1.21170 1.03249 0.97962 1.03238 1.17439 0.89866 0.89084 0.91609 1.19986 1.06098 1.21864 0.97789 0.86663 1.26365 0.98518 0.92219 0.96595 1.69642 1.30847 1.28457 1.11944 0.86403 0.82913 0.80679 0.76559 1.18984 1.21521 1.17066 0.93401 0.90659 0.92297 0.91787 0.90230 0.92254 0.90845 0.91622 0.91563 0.91694 0.92360 0.92270 0.92529 0.91986 0.92295 0.92392 0.92240 0.91798 0.88401 0.88637 0.88710 0.87599 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 9.04 59.85 0.54 1.85 16 2 N -0.63 -11.34 2.87 -182.85 -0.53 -11.86 16 3 C 0.12 1.85 5.10 -4.04 -0.02 1.83 16 4 C -0.13 -1.92 5.00 -26.74 -0.13 -2.05 16 5 C -0.08 -0.95 2.19 -90.62 -0.20 -1.15 16 6 C -0.12 -1.46 4.96 -26.73 -0.13 -1.59 16 7 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 8 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 9 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 10 C -0.11 -1.29 5.20 -26.73 -0.14 -1.43 16 11 C 0.58 13.37 6.78 -12.52 -0.08 13.29 16 12 O -0.54 -14.13 14.61 5.27 0.08 -14.06 16 13 C -0.25 -5.83 4.83 -104.37 -0.50 -6.33 16 14 C -0.04 -0.85 8.06 -39.22 -0.32 -1.17 16 15 C -0.26 -5.13 10.03 -39.37 -0.39 -5.52 16 16 C -0.06 -1.34 10.01 -39.59 -0.40 -1.74 16 17 C -0.24 -5.67 7.36 -38.88 -0.29 -5.95 16 18 C 0.12 3.21 5.07 -106.54 -0.54 2.67 16 19 C -0.43 -12.03 8.84 -37.81 -0.33 -12.37 16 20 H 0.12 3.58 6.13 -52.48 -0.32 3.26 16 21 C 0.08 2.23 5.37 -17.30 -0.09 2.14 16 22 N -0.79 -21.03 13.92 55.56 0.77 -20.26 16 23 Si 0.91 20.40 24.81 -169.99 -4.22 16.18 16 24 H -0.26 -5.70 6.43 56.52 0.36 -5.34 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.25 -5.63 7.11 56.52 0.40 -5.23 16 27 H 0.05 0.63 6.82 -51.93 -0.35 0.28 16 28 H 0.07 1.25 6.88 -51.93 -0.36 0.89 16 29 H 0.06 0.70 8.03 -51.93 -0.42 0.28 16 30 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.08 1.33 5.93 -51.93 -0.31 1.02 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 1.73 6.42 -52.49 -0.34 1.39 16 46 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 47 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.11 2.51 4.89 -52.49 -0.26 2.26 16 49 H 0.29 6.88 8.29 -40.82 -0.34 6.54 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -29.50 374.33 -9.96 -39.47 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.20 Total: 6.43 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -3.51 Total: -21.55 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.25 Total: -32.12 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.22 Total: 16.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.50 -9.96 -39.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601030722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.856 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds