Wall clock time and date at job start Tue Mar 31 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99499 * 2 1 4 4 C 1.52992 * 109.47532 * 89.99676 * 3 2 1 5 5 C 1.52999 * 109.47200 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.46970 * 294.99799 * 5 4 3 7 7 C 1.52999 * 109.46970 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47164 * 60.00138 * 7 6 5 9 9 C 1.53001 * 109.47360 * 300.00216 * 8 7 6 10 10 C 1.52999 * 109.46855 * 59.99547 * 9 8 7 11 11 C 1.34775 * 120.00352 * 179.97438 * 2 1 3 12 12 O 1.21606 * 119.99815 * 185.49986 * 11 2 1 13 13 C 1.47428 * 119.99838 * 5.49486 * 11 2 1 14 14 C 1.39228 * 120.28504 * 46.75163 * 13 11 2 15 15 C 1.38222 * 120.09229 * 179.97438 * 14 13 11 16 16 C 1.38829 * 120.67744 * 0.02876 * 15 14 13 17 17 C 1.37602 * 120.56908 * 359.96947 * 16 15 14 18 18 C 1.40710 * 119.87996 * 359.75219 * 17 16 15 19 19 C 1.40887 * 120.32379 * 180.25072 * 18 17 16 20 20 H 1.08003 * 120.00211 * 148.92014 * 19 18 17 21 21 C 1.40278 * 120.00017 * 328.91577 * 19 18 17 22 22 N 1.30629 * 119.99689 * 159.75228 * 21 19 18 23 23 Si 1.86793 * 120.00256 * 339.74960 * 21 19 18 24 24 H 1.48505 * 109.47037 * 89.33360 * 23 21 19 25 25 H 1.48493 * 109.47352 * 209.33911 * 23 21 19 26 26 H 1.48500 * 109.46955 * 329.33927 * 23 21 19 27 27 H 1.09005 * 109.46706 * 95.13874 * 1 2 3 28 28 H 1.09003 * 109.46818 * 215.12679 * 1 2 3 29 29 H 1.08993 * 109.47598 * 335.13270 * 1 2 3 30 30 H 1.09000 * 109.46976 * 329.99056 * 3 2 1 31 31 H 1.09000 * 109.46713 * 209.99936 * 3 2 1 32 32 H 1.09006 * 109.46919 * 300.00020 * 4 3 2 33 33 H 1.09009 * 109.46940 * 59.99815 * 4 3 2 34 34 H 1.08999 * 109.47139 * 55.00533 * 5 4 3 35 35 H 1.09000 * 109.47341 * 300.00047 * 6 5 4 36 36 H 1.09002 * 109.47213 * 60.00124 * 6 5 4 37 37 H 1.08997 * 109.47618 * 300.00146 * 7 6 5 38 38 H 1.09005 * 109.47387 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.47366 * 179.97438 * 8 7 6 40 40 H 1.09000 * 109.47065 * 60.00003 * 8 7 6 41 41 H 1.09000 * 109.46858 * 299.99914 * 9 8 7 42 42 H 1.08993 * 109.47241 * 179.97438 * 9 8 7 43 43 H 1.08999 * 109.46770 * 180.02562 * 10 9 8 44 44 H 1.09000 * 109.47088 * 60.00508 * 10 9 8 45 45 H 1.07998 * 119.94877 * 359.95724 * 14 13 11 46 46 H 1.07999 * 119.65882 * 179.97438 * 15 14 13 47 47 H 1.07992 * 119.71499 * 179.97438 * 16 15 14 48 48 H 1.08000 * 120.05735 * 179.97438 * 17 16 15 49 49 H 0.96998 * 119.99693 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 1.4424 5 6 3.2178 3.0354 1.4423 6 6 4.6050 2.8228 0.8330 7 6 5.3707 4.1474 0.8335 8 6 5.5167 4.6515 2.2706 9 6 4.1295 4.8640 2.8801 10 6 3.3639 3.5394 2.8795 11 6 2.1390 -1.1671 0.0005 12 8 3.3508 -1.1694 0.1015 13 6 1.4070 -2.4411 -0.1212 14 6 0.4192 -2.5934 -1.0905 15 6 -0.2643 -3.7897 -1.2014 16 6 0.0220 -4.8504 -0.3526 17 6 0.9928 -4.7299 0.6151 18 6 1.7073 -3.5247 0.7451 19 6 2.7069 -3.3930 1.7292 20 1 3.5586 -2.7531 1.5515 21 6 2.5958 -4.0928 2.9399 22 7 3.6562 -4.3001 3.6740 23 14 0.9317 -4.7282 3.5022 24 1 0.7156 -6.0948 2.9628 25 1 0.8934 -4.7698 4.9861 26 1 -0.1369 -3.8250 3.0046 27 1 -0.3633 -0.0921 -1.0236 28 1 -0.3633 -0.8405 0.5913 29 1 -0.3634 0.9323 0.4321 30 1 1.6084 2.0284 -0.5140 31 1 3.1499 1.1385 -0.5138 32 1 1.4999 1.8409 1.9562 33 1 3.0415 0.9510 1.9563 34 1 2.6707 3.7711 0.8527 35 1 5.1520 2.0871 1.4226 36 1 4.5010 2.4632 -0.1908 37 1 4.8239 4.8834 0.2441 38 1 6.3589 3.9961 0.3989 39 1 6.0626 5.5950 2.2711 40 1 6.0636 3.9155 2.8600 41 1 3.5827 5.6000 2.2907 42 1 4.2336 5.2227 3.9040 43 1 2.3755 3.6909 3.3133 44 1 3.9108 2.8034 3.4689 45 1 0.1866 -1.7756 -1.7564 46 1 -1.0294 -3.9001 -1.9555 47 1 -0.5219 -5.7780 -0.4527 48 1 1.2085 -5.5602 1.2712 49 1 3.5795 -4.7844 4.5109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601030722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:00 Heat of formation + Delta-G solvation = -64.070681 kcal Electronic energy + Delta-G solvation = -26884.092550 eV Core-core repulsion = 23387.539090 eV Total energy + Delta-G solvation = -3496.553460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07950 -39.73539 -38.77540 -36.67873 -35.58872 -34.09043 -32.36286 -31.80999 -31.62517 -29.29884 -27.67196 -26.97095 -25.12285 -23.64704 -23.36139 -22.67593 -21.69462 -20.63664 -20.18651 -19.34880 -18.11669 -17.44804 -17.02308 -16.41924 -16.24544 -15.92426 -15.71141 -15.40702 -15.19604 -15.01032 -14.82124 -14.50137 -14.35845 -14.17639 -13.91925 -13.71706 -13.53458 -13.36778 -13.14219 -12.99376 -12.84240 -12.71867 -12.57798 -12.45282 -12.16875 -12.02362 -11.99835 -11.98937 -11.68503 -11.64368 -11.34855 -11.01110 -11.00703 -10.84638 -10.45045 -9.56643 -9.50500 -9.42550 -8.94785 -6.55004 0.47178 0.83227 1.21779 1.35657 1.44701 1.99292 2.09306 2.33750 2.58638 3.48591 3.71056 3.74231 3.85751 3.95780 4.17027 4.20107 4.25269 4.37579 4.38455 4.44872 4.47211 4.52487 4.55732 4.63268 4.66210 4.66965 4.73224 4.76839 4.81307 4.85680 4.96515 5.00858 5.02710 5.04782 5.13330 5.20871 5.26313 5.27580 5.29771 5.33827 5.41140 5.45805 5.48685 5.62304 5.73416 5.78740 5.89202 5.99197 6.22387 6.38960 6.53239 6.75740 6.79584 7.49442 8.12444 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.003856 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.540298 B = 7259.854959 C = 8307.618829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.621 5.621 3 C 0.119 3.881 4 C -0.123 4.123 5 C -0.071 4.071 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.122 4.122 9 C -0.112 4.112 10 C -0.116 4.116 11 C 0.570 3.430 12 O -0.590 6.590 13 C -0.261 4.261 14 C -0.039 4.039 15 C -0.232 4.232 16 C -0.062 4.062 17 C -0.256 4.256 18 C 0.105 3.895 19 C -0.479 4.479 20 H 0.059 0.941 21 C 0.045 3.955 22 N -0.840 5.840 23 Si 0.970 3.030 24 H -0.246 1.246 25 H -0.274 1.274 26 H -0.252 1.252 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.017 0.983 34 H 0.096 0.904 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.134 0.866 46 H 0.143 0.857 47 H 0.135 0.865 48 H 0.102 0.898 49 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 15.753 -4.350 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.353 5.353 3 C -0.003 4.003 4 C -0.162 4.162 5 C -0.090 4.090 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.154 4.154 11 C 0.362 3.638 12 O -0.472 6.472 13 C -0.265 4.265 14 C -0.058 4.058 15 C -0.250 4.250 16 C -0.080 4.080 17 C -0.275 4.275 18 C 0.102 3.898 19 C -0.508 4.508 20 H 0.077 0.923 21 C -0.171 4.171 22 N -0.465 5.465 23 Si 0.791 3.209 24 H -0.170 1.170 25 H -0.200 1.200 26 H -0.175 1.175 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.036 0.964 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.152 0.848 46 H 0.161 0.839 47 H 0.153 0.847 48 H 0.120 0.880 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.866 15.702 -4.076 18.029 hybrid contribution 0.537 -0.875 0.813 1.310 sum -7.329 14.827 -3.263 16.858 Atomic orbital electron populations 1.21990 0.77669 1.03553 1.02810 1.47883 1.08176 1.05090 1.74181 1.21579 0.97176 0.84596 0.96976 1.21929 1.00224 0.96962 0.97090 1.21044 0.95268 0.95539 0.97147 1.21625 0.96166 0.97597 1.00193 1.21511 0.99996 0.96300 0.97273 1.21568 0.97453 1.01040 0.95897 1.21500 0.95600 0.96604 1.01257 1.21593 1.00611 0.97321 0.95839 1.18617 0.86319 0.84714 0.74111 1.90646 1.16813 1.87965 1.51738 1.19751 1.05321 0.93806 1.07656 1.21156 0.91860 0.98046 0.94711 1.20892 1.05699 0.93913 1.04530 1.21206 0.94620 0.98991 0.93186 1.21268 1.04482 0.97025 1.04738 1.17668 0.89858 0.90650 0.91650 1.19752 1.06568 1.23889 1.00565 0.92306 1.27135 1.01966 0.92130 0.95889 1.69688 1.32777 1.30924 1.13120 0.85491 0.78003 0.80616 0.76819 1.17034 1.20037 1.17525 0.90595 0.92642 0.88668 0.86981 0.92460 0.91024 0.96353 0.88560 0.95282 0.92435 0.90273 0.92289 0.90539 0.93783 0.90367 0.91501 0.91132 0.94556 0.84814 0.83931 0.84739 0.88031 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 9.04 127.77 1.15 3.30 16 2 N -0.62 -22.18 2.87 -850.66 -2.44 -24.63 16 3 C 0.12 3.57 5.10 86.38 0.44 4.01 16 4 C -0.12 -3.73 5.00 30.59 0.15 -3.57 16 5 C -0.07 -1.67 2.19 -10.80 -0.02 -1.70 16 6 C -0.12 -3.11 4.96 30.59 0.15 -2.96 16 7 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 8 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 9 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 10 C -0.12 -2.59 5.20 30.59 0.16 -2.43 16 11 C 0.57 27.41 6.78 86.66 0.59 28.00 16 12 O -0.59 -34.12 14.61 -4.05 -0.06 -34.18 16 13 C -0.26 -12.44 4.83 -19.70 -0.10 -12.53 16 14 C -0.04 -1.47 8.06 22.50 0.18 -1.29 16 15 C -0.23 -7.96 10.03 22.41 0.22 -7.73 16 16 C -0.06 -2.35 10.01 22.26 0.22 -2.13 16 17 C -0.26 -12.05 7.36 22.72 0.17 -11.89 16 18 C 0.11 5.64 5.07 -21.11 -0.11 5.53 16 19 C -0.48 -29.26 8.84 23.42 0.21 -29.06 16 20 H 0.06 4.15 6.13 -2.91 -0.02 4.13 16 21 C 0.04 2.52 5.37 85.37 0.46 2.98 16 22 N -0.84 -48.83 13.92 21.88 0.30 -48.53 16 23 Si 0.97 43.30 24.81 68.60 1.70 45.00 16 24 H -0.25 -10.11 6.43 99.48 0.64 -9.47 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.25 -11.21 7.11 99.48 0.71 -10.51 16 27 H 0.08 1.60 6.82 -2.38 -0.02 1.59 16 28 H 0.05 1.70 6.88 -2.39 -0.02 1.69 16 29 H 0.09 1.84 8.03 -2.39 -0.02 1.82 16 30 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 31 H 0.06 2.00 5.93 -2.39 -0.01 1.99 16 32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.57 6.56 -2.39 -0.02 1.55 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.13 4.03 6.42 -2.91 -0.02 4.01 16 46 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 47 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 48 H 0.10 4.79 4.89 -2.91 -0.01 4.78 16 49 H 0.30 15.23 8.29 -92.71 -0.77 14.46 16 Total: -1.00 -74.86 374.33 4.78 -70.08 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.85 Total: 29.72 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 4.43 Total: -37.46 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -2.14 Total: -73.16 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.06 Total: -34.18 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.70 Total: 45.00 kcal Total: -74.86 4.78 -70.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601030722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.009 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds