Wall clock time and date at job start Tue Mar 31 2020 11:08:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08997 * 109.47201 * 2 1
4 4 C 1.53001 * 109.47217 * 120.00104 * 2 1 3
5 5 C 1.52998 * 109.47433 * 184.88152 * 4 2 1
6 6 C 1.53000 * 109.46983 * 65.89244 * 5 4 2
7 7 C 1.52996 * 109.47299 * 180.02562 * 6 5 4
8 8 C 1.53003 * 109.46902 * 299.99768 * 7 6 5
9 9 C 1.53004 * 109.46735 * 60.00315 * 8 7 6
10 10 C 1.52996 * 109.47168 * 299.99522 * 9 8 7
11 11 N 1.46498 * 109.47415 * 240.00234 * 2 1 3
12 12 C 1.34779 * 120.00406 * 84.99826 * 11 2 1
13 13 O 1.21613 * 119.99721 * 0.02562 * 12 11 2
14 14 C 1.47430 * 120.00188 * 180.02562 * 12 11 2
15 15 C 1.39226 * 120.28436 * 4.91498 * 14 12 11
16 16 C 1.38219 * 120.08924 * 180.02562 * 15 14 12
17 17 C 1.38819 * 120.67893 * 0.02562 * 16 15 14
18 18 C 1.37605 * 120.57113 * 0.02562 * 17 16 15
19 19 C 1.40702 * 119.87877 * 359.68125 * 18 17 16
20 20 C 1.40896 * 120.32906 * 180.30088 * 19 18 17
21 21 H 1.07998 * 120.00094 * 143.14895 * 20 19 18
22 22 C 1.40270 * 119.99564 * 323.14676 * 20 19 18
23 23 N 1.30626 * 120.00022 * 169.70285 * 22 20 19
24 24 Si 1.86803 * 120.00313 * 349.70096 * 22 20 19
25 25 H 1.48501 * 109.47211 * 88.89280 * 24 22 20
26 26 H 1.48499 * 109.47547 * 208.89880 * 24 22 20
27 27 H 1.48505 * 109.46887 * 328.89882 * 24 22 20
28 28 H 1.09006 * 109.46711 * 179.97438 * 1 2 3
29 29 H 1.08991 * 109.47420 * 299.99641 * 1 2 3
30 30 H 1.09002 * 109.47184 * 60.00392 * 1 2 3
31 31 H 1.09001 * 109.46816 * 64.88672 * 4 2 1
32 32 H 1.08993 * 109.47365 * 304.88755 * 4 2 1
33 33 H 1.09001 * 109.47425 * 305.89425 * 5 4 2
34 34 H 1.09001 * 109.46892 * 59.99855 * 6 5 4
35 35 H 1.09006 * 109.46960 * 300.00368 * 6 5 4
36 36 H 1.08997 * 109.47159 * 180.02562 * 7 6 5
37 37 H 1.09001 * 109.47421 * 59.99990 * 7 6 5
38 38 H 1.08998 * 109.46934 * 180.02562 * 8 7 6
39 39 H 1.09001 * 109.47264 * 300.00318 * 8 7 6
40 40 H 1.09001 * 109.47242 * 59.99989 * 9 8 7
41 41 H 1.09006 * 109.46742 * 179.97438 * 9 8 7
42 42 H 1.09001 * 109.47421 * 300.00358 * 10 9 8
43 43 H 1.08997 * 109.47159 * 180.02562 * 10 9 8
44 44 H 0.97002 * 119.99938 * 265.00190 * 11 2 1
45 45 H 1.08003 * 119.95043 * 0.02562 * 15 14 12
46 46 H 1.08004 * 119.65905 * 179.97438 * 16 15 14
47 47 H 1.08008 * 119.71616 * 179.97438 * 17 16 15
48 48 H 1.08002 * 120.05598 * 179.97438 * 18 17 16
49 49 H 0.97007 * 120.00169 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5650 -0.6159 1.3122
6 6 3.9671 0.8457 1.5198
7 6 5.4921 0.9513 1.5821
8 6 6.0145 0.1082 2.7472
9 6 5.6125 -1.3534 2.5395
10 6 4.0874 -1.4589 2.4772
11 7 2.0184 -0.6905 -1.1962
12 6 2.1471 -0.0182 -2.3572
13 8 1.8583 1.1619 -2.4117
14 6 2.6381 -0.7133 -3.5610
15 6 2.8733 -2.0853 -3.5328
16 6 3.3341 -2.7328 -4.6636
17 6 3.5682 -2.0289 -5.8370
18 6 3.3460 -0.6722 -5.8954
19 6 2.8711 0.0099 -4.7601
20 6 2.6343 1.3978 -4.8112
21 1 1.7965 1.8227 -4.2784
22 6 3.4869 2.2278 -5.5541
23 7 3.1605 3.4742 -5.7694
24 14 5.0890 1.5508 -6.2356
25 1 4.8487 0.9714 -7.5817
26 1 6.0855 2.6469 -6.3391
27 1 5.6064 0.4955 -5.3278
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5137 0.8899
30 1 -0.3634 0.5138 -0.8900
31 1 1.7499 -1.7711 1.2065
32 1 1.6070 -0.2606 2.1370
33 1 3.9934 -0.9814 0.3789
34 1 3.5387 1.2113 2.4531
35 1 3.5952 1.4463 0.6895
36 1 5.7785 1.9924 1.7304
37 1 5.9201 0.5858 0.6486
38 1 7.1009 0.1838 2.7918
39 1 5.5865 0.4737 3.6807
40 1 6.0405 -1.7188 1.6060
41 1 5.9850 -1.9541 3.3693
42 1 3.6594 -1.0935 3.4106
43 1 3.8010 -2.5002 2.3296
44 1 2.2491 -1.6317 -1.1526
45 1 2.6955 -2.6443 -2.6259
46 1 3.5147 -3.7972 -4.6338
47 1 3.9287 -2.5505 -6.7114
48 1 3.5314 -0.1327 -6.8125
49 1 3.7500 4.0481 -6.2835
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601538466.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:08:15
Heat of formation + Delta-G solvation = -54.379446 kcal
Electronic energy + Delta-G solvation = -27122.108836 eV
Core-core repulsion = 23625.975619 eV
Total energy + Delta-G solvation = -3496.133217 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.86 seconds
Orbital eigenvalues (eV)
-39.51798 -38.55380 -37.09152 -35.27675 -33.64865 -32.10251 -30.83210 -30.57977
-30.43381 -29.12574 -26.09154 -25.34055 -22.97444 -22.54657 -21.75801 -21.14303
-20.07403 -19.72876 -19.38469 -17.52445 -16.67420 -15.64425 -15.54469 -15.23464
-14.48499 -14.33371 -14.18212 -14.08226 -13.98916 -13.78156 -13.54476 -13.02598
-12.89567 -12.62262 -12.60437 -12.29784 -12.18330 -11.98409 -11.87429 -11.67890
-11.44797 -11.22515 -11.08807 -10.92403 -10.88980 -10.76875 -10.67055 -10.43537
-10.39909 -10.12735 -9.99583 -9.82648 -9.78184 -9.21328 -8.41809 -8.32235
-7.80957 -7.56891 -6.87692 -4.45815 2.13027 2.61191 3.09689 3.17956
3.29262 3.94300 3.99465 4.06058 4.58091 4.62873 4.67965 4.74681
5.03045 5.12994 5.26090 5.32306 5.41546 5.47262 5.52214 5.55059
5.57770 5.65519 5.69774 5.76231 5.79266 5.87467 5.91793 5.96694
6.00309 6.01071 6.06030 6.11809 6.18167 6.24258 6.27873 6.29716
6.41677 6.50414 6.52780 6.55025 6.59522 6.81734 7.11391 7.21213
7.28137 7.41355 7.60778 7.78443 8.03389 8.39580 8.51115 8.66656
8.89271 9.43232 10.09350
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.012468 B = 0.004201 C = 0.004036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2245.239226 B = 6663.297882 C = 6935.175764
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.143 3.857
3 H 0.087 0.913
4 C -0.120 4.120
5 C -0.088 4.088
6 C -0.116 4.116
7 C -0.121 4.121
8 C -0.118 4.118
9 C -0.120 4.120
10 C -0.112 4.112
11 N -0.741 5.741
12 C 0.562 3.438
13 O -0.528 6.528
14 C -0.248 4.248
15 C -0.042 4.042
16 C -0.254 4.254
17 C -0.066 4.066
18 C -0.229 4.229
19 C 0.117 3.883
20 C -0.402 4.402
21 H 0.123 0.877
22 C 0.079 3.921
23 N -0.795 5.795
24 Si 0.907 3.093
25 H -0.267 1.267
26 H -0.289 1.289
27 H -0.246 1.246
28 H 0.050 0.950
29 H 0.056 0.944
30 H 0.062 0.938
31 H 0.064 0.936
32 H 0.071 0.929
33 H 0.076 0.924
34 H 0.057 0.943
35 H 0.069 0.931
36 H 0.059 0.941
37 H 0.063 0.937
38 H 0.056 0.944
39 H 0.058 0.942
40 H 0.062 0.938
41 H 0.057 0.943
42 H 0.058 0.942
43 H 0.059 0.941
44 H 0.389 0.611
45 H 0.094 0.906
46 H 0.096 0.904
47 H 0.095 0.905
48 H 0.106 0.894
49 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.632 -8.445 14.010 16.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.038 3.962
3 H 0.105 0.895
4 C -0.158 4.158
5 C -0.106 4.106
6 C -0.153 4.153
7 C -0.158 4.158
8 C -0.155 4.155
9 C -0.157 4.157
10 C -0.150 4.150
11 N -0.395 5.395
12 C 0.355 3.645
13 O -0.406 6.406
14 C -0.252 4.252
15 C -0.061 4.061
16 C -0.274 4.274
17 C -0.084 4.084
18 C -0.248 4.248
19 C 0.113 3.887
20 C -0.429 4.429
21 H 0.141 0.859
22 C -0.141 4.141
23 N -0.418 5.418
24 Si 0.734 3.266
25 H -0.193 1.193
26 H -0.217 1.217
27 H -0.169 1.169
28 H 0.070 0.930
29 H 0.075 0.925
30 H 0.081 0.919
31 H 0.082 0.918
32 H 0.090 0.910
33 H 0.094 0.906
34 H 0.076 0.924
35 H 0.088 0.912
36 H 0.078 0.922
37 H 0.081 0.919
38 H 0.075 0.925
39 H 0.077 0.923
40 H 0.080 0.920
41 H 0.075 0.925
42 H 0.077 0.923
43 H 0.077 0.923
44 H 0.223 0.777
45 H 0.112 0.888
46 H 0.114 0.886
47 H 0.114 0.886
48 H 0.124 0.876
49 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 2.427 -7.257 13.895 15.863
hybrid contribution 0.829 -0.726 -0.407 1.175
sum 3.256 -7.984 13.488 16.009
Atomic orbital electron populations
1.22181 0.96265 1.01472 1.02130 1.20813 0.93233 0.97910 0.84213
0.89492 1.21924 0.95523 1.00717 0.97613 1.21165 0.94851 0.95710
0.98890 1.21620 0.95504 0.96370 1.01810 1.21528 0.96125 0.99541
0.98639 1.21527 1.00041 0.95373 0.98580 1.21529 0.96139 0.96518
1.01544 1.21574 0.95384 0.99520 0.98484 1.46056 1.70382 1.13410
1.09680 1.18315 0.77243 0.86444 0.82511 1.90724 1.49737 1.15610
1.84489 1.19480 1.18426 0.93529 0.93794 1.20778 0.95509 0.93370
0.96422 1.20283 1.14304 0.98145 0.94655 1.20739 0.96922 0.94260
0.96510 1.21227 1.11099 0.94231 0.98258 1.17562 0.88264 0.93792
0.89112 1.20149 1.11065 0.90364 1.21296 0.85936 1.26352 1.00289
0.94752 0.92667 1.69569 1.36571 1.06694 1.28985 0.86408 0.80760
0.79027 0.80427 1.19341 1.21672 1.16888 0.93047 0.92526 0.91875
0.91769 0.91013 0.90593 0.92394 0.91225 0.92250 0.91857 0.92474
0.92341 0.91970 0.92474 0.92289 0.92272 0.77701 0.88761 0.88622
0.88645 0.87646 0.90321
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16
2 C 0.14 2.09 2.45 -67.93 -0.17 1.92 16
3 H 0.09 1.48 5.82 -51.93 -0.30 1.18 16
4 C -0.12 -1.31 4.21 -26.73 -0.11 -1.43 16
5 C -0.09 -1.00 2.13 -90.62 -0.19 -1.19 16
6 C -0.12 -1.41 4.98 -26.73 -0.13 -1.54 16
7 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16
8 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16
9 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16
10 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16
11 N -0.74 -12.42 4.38 -54.88 -0.24 -12.66 16
12 C 0.56 12.54 7.69 -12.52 -0.10 12.44 16
13 O -0.53 -13.82 13.22 5.27 0.07 -13.75 16
14 C -0.25 -5.77 5.92 -104.37 -0.62 -6.39 16
15 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16
16 C -0.25 -5.00 10.03 -39.37 -0.39 -5.40 16
17 C -0.07 -1.37 10.01 -39.60 -0.40 -1.77 16
18 C -0.23 -5.45 7.12 -38.88 -0.28 -5.72 16
19 C 0.12 3.03 5.02 -106.54 -0.54 2.49 16
20 C -0.40 -11.31 8.27 -37.81 -0.31 -11.62 16
21 H 0.12 3.82 6.02 -52.49 -0.32 3.50 16
22 C 0.08 2.14 5.47 -17.30 -0.09 2.04 16
23 N -0.79 -21.72 13.92 55.56 0.77 -20.95 16
24 Si 0.91 20.96 24.54 -169.99 -4.17 16.79 16
25 H -0.27 -5.88 6.59 56.52 0.37 -5.51 16
26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16
27 H -0.25 -5.82 6.93 56.52 0.39 -5.43 16
28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
33 H 0.08 1.01 7.59 -51.93 -0.39 0.61 16
34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.07 1.02 6.49 -51.93 -0.34 0.68 16
36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
44 H 0.39 5.63 6.66 -40.82 -0.27 5.36 16
45 H 0.09 1.52 6.43 -52.48 -0.34 1.18 16
46 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16
47 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16
48 H 0.11 2.48 4.96 -52.49 -0.26 2.22 16
49 H 0.29 7.04 8.29 -40.82 -0.34 6.70 16
LS Contribution 374.34 15.07 5.64 5.64
Total: -1.00 -29.45 374.34 -10.05 -39.50
By element:
Atomic # 1 Polarization: 18.24 SS G_CDS: -8.16 Total: 10.08 kcal
Atomic # 6 Polarization: -20.68 SS G_CDS: -3.97 Total: -24.65 kcal
Atomic # 7 Polarization: -34.14 SS G_CDS: 0.53 Total: -33.61 kcal
Atomic # 8 Polarization: -13.82 SS G_CDS: 0.07 Total: -13.75 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -29.45 -10.05 -39.50 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601538466.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.883 kcal
(2) G-P(sol) polarization free energy of solvation -29.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.328 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.379 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.86 seconds