Wall clock time and date at job start Tue Mar 31 2020 11:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47217 * 120.00104 * 2 1 3 5 5 C 1.52998 * 109.47433 * 184.88152 * 4 2 1 6 6 C 1.53000 * 109.46983 * 65.89244 * 5 4 2 7 7 C 1.52996 * 109.47299 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46902 * 299.99768 * 7 6 5 9 9 C 1.53004 * 109.46735 * 60.00315 * 8 7 6 10 10 C 1.52996 * 109.47168 * 299.99522 * 9 8 7 11 11 N 1.46498 * 109.47415 * 240.00234 * 2 1 3 12 12 C 1.34779 * 120.00406 * 84.99826 * 11 2 1 13 13 O 1.21613 * 119.99721 * 0.02562 * 12 11 2 14 14 C 1.47430 * 120.00188 * 180.02562 * 12 11 2 15 15 C 1.39226 * 120.28436 * 4.91498 * 14 12 11 16 16 C 1.38219 * 120.08924 * 180.02562 * 15 14 12 17 17 C 1.38819 * 120.67893 * 0.02562 * 16 15 14 18 18 C 1.37605 * 120.57113 * 0.02562 * 17 16 15 19 19 C 1.40702 * 119.87877 * 359.68125 * 18 17 16 20 20 C 1.40896 * 120.32906 * 180.30088 * 19 18 17 21 21 H 1.07998 * 120.00094 * 143.14895 * 20 19 18 22 22 C 1.40270 * 119.99564 * 323.14676 * 20 19 18 23 23 N 1.30626 * 120.00022 * 169.70285 * 22 20 19 24 24 Si 1.86803 * 120.00313 * 349.70096 * 22 20 19 25 25 H 1.48501 * 109.47211 * 88.89280 * 24 22 20 26 26 H 1.48499 * 109.47547 * 208.89880 * 24 22 20 27 27 H 1.48505 * 109.46887 * 328.89882 * 24 22 20 28 28 H 1.09006 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47420 * 299.99641 * 1 2 3 30 30 H 1.09002 * 109.47184 * 60.00392 * 1 2 3 31 31 H 1.09001 * 109.46816 * 64.88672 * 4 2 1 32 32 H 1.08993 * 109.47365 * 304.88755 * 4 2 1 33 33 H 1.09001 * 109.47425 * 305.89425 * 5 4 2 34 34 H 1.09001 * 109.46892 * 59.99855 * 6 5 4 35 35 H 1.09006 * 109.46960 * 300.00368 * 6 5 4 36 36 H 1.08997 * 109.47159 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47421 * 59.99990 * 7 6 5 38 38 H 1.08998 * 109.46934 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.47264 * 300.00318 * 8 7 6 40 40 H 1.09001 * 109.47242 * 59.99989 * 9 8 7 41 41 H 1.09006 * 109.46742 * 179.97438 * 9 8 7 42 42 H 1.09001 * 109.47421 * 300.00358 * 10 9 8 43 43 H 1.08997 * 109.47159 * 180.02562 * 10 9 8 44 44 H 0.97002 * 119.99938 * 265.00190 * 11 2 1 45 45 H 1.08003 * 119.95043 * 0.02562 * 15 14 12 46 46 H 1.08004 * 119.65905 * 179.97438 * 16 15 14 47 47 H 1.08008 * 119.71616 * 179.97438 * 17 16 15 48 48 H 1.08002 * 120.05598 * 179.97438 * 18 17 16 49 49 H 0.97007 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5650 -0.6159 1.3122 6 6 3.9671 0.8457 1.5198 7 6 5.4921 0.9513 1.5821 8 6 6.0145 0.1082 2.7472 9 6 5.6125 -1.3534 2.5395 10 6 4.0874 -1.4589 2.4772 11 7 2.0184 -0.6905 -1.1962 12 6 2.1471 -0.0182 -2.3572 13 8 1.8583 1.1619 -2.4117 14 6 2.6381 -0.7133 -3.5610 15 6 2.8733 -2.0853 -3.5328 16 6 3.3341 -2.7328 -4.6636 17 6 3.5682 -2.0289 -5.8370 18 6 3.3460 -0.6722 -5.8954 19 6 2.8711 0.0099 -4.7601 20 6 2.6343 1.3978 -4.8112 21 1 1.7965 1.8227 -4.2784 22 6 3.4869 2.2278 -5.5541 23 7 3.1605 3.4742 -5.7694 24 14 5.0890 1.5508 -6.2356 25 1 4.8487 0.9714 -7.5817 26 1 6.0855 2.6469 -6.3391 27 1 5.6064 0.4955 -5.3278 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7499 -1.7711 1.2065 32 1 1.6070 -0.2606 2.1370 33 1 3.9934 -0.9814 0.3789 34 1 3.5387 1.2113 2.4531 35 1 3.5952 1.4463 0.6895 36 1 5.7785 1.9924 1.7304 37 1 5.9201 0.5858 0.6486 38 1 7.1009 0.1838 2.7918 39 1 5.5865 0.4737 3.6807 40 1 6.0405 -1.7188 1.6060 41 1 5.9850 -1.9541 3.3693 42 1 3.6594 -1.0935 3.4106 43 1 3.8010 -2.5002 2.3296 44 1 2.2491 -1.6317 -1.1526 45 1 2.6955 -2.6443 -2.6259 46 1 3.5147 -3.7972 -4.6338 47 1 3.9287 -2.5505 -6.7114 48 1 3.5314 -0.1327 -6.8125 49 1 3.7500 4.0481 -6.2835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601538466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:15 Heat of formation + Delta-G solvation = -54.379446 kcal Electronic energy + Delta-G solvation = -27122.108836 eV Core-core repulsion = 23625.975619 eV Total energy + Delta-G solvation = -3496.133217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.51798 -38.55380 -37.09152 -35.27675 -33.64865 -32.10251 -30.83210 -30.57977 -30.43381 -29.12574 -26.09154 -25.34055 -22.97444 -22.54657 -21.75801 -21.14303 -20.07403 -19.72876 -19.38469 -17.52445 -16.67420 -15.64425 -15.54469 -15.23464 -14.48499 -14.33371 -14.18212 -14.08226 -13.98916 -13.78156 -13.54476 -13.02598 -12.89567 -12.62262 -12.60437 -12.29784 -12.18330 -11.98409 -11.87429 -11.67890 -11.44797 -11.22515 -11.08807 -10.92403 -10.88980 -10.76875 -10.67055 -10.43537 -10.39909 -10.12735 -9.99583 -9.82648 -9.78184 -9.21328 -8.41809 -8.32235 -7.80957 -7.56891 -6.87692 -4.45815 2.13027 2.61191 3.09689 3.17956 3.29262 3.94300 3.99465 4.06058 4.58091 4.62873 4.67965 4.74681 5.03045 5.12994 5.26090 5.32306 5.41546 5.47262 5.52214 5.55059 5.57770 5.65519 5.69774 5.76231 5.79266 5.87467 5.91793 5.96694 6.00309 6.01071 6.06030 6.11809 6.18167 6.24258 6.27873 6.29716 6.41677 6.50414 6.52780 6.55025 6.59522 6.81734 7.11391 7.21213 7.28137 7.41355 7.60778 7.78443 8.03389 8.39580 8.51115 8.66656 8.89271 9.43232 10.09350 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.004201 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.239226 B = 6663.297882 C = 6935.175764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.088 4.088 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.112 4.112 11 N -0.741 5.741 12 C 0.562 3.438 13 O -0.528 6.528 14 C -0.248 4.248 15 C -0.042 4.042 16 C -0.254 4.254 17 C -0.066 4.066 18 C -0.229 4.229 19 C 0.117 3.883 20 C -0.402 4.402 21 H 0.123 0.877 22 C 0.079 3.921 23 N -0.795 5.795 24 Si 0.907 3.093 25 H -0.267 1.267 26 H -0.289 1.289 27 H -0.246 1.246 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.389 0.611 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.632 -8.445 14.010 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.106 4.106 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.157 4.157 10 C -0.150 4.150 11 N -0.395 5.395 12 C 0.355 3.645 13 O -0.406 6.406 14 C -0.252 4.252 15 C -0.061 4.061 16 C -0.274 4.274 17 C -0.084 4.084 18 C -0.248 4.248 19 C 0.113 3.887 20 C -0.429 4.429 21 H 0.141 0.859 22 C -0.141 4.141 23 N -0.418 5.418 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.217 1.217 27 H -0.169 1.169 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.223 0.777 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.124 0.876 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.427 -7.257 13.895 15.863 hybrid contribution 0.829 -0.726 -0.407 1.175 sum 3.256 -7.984 13.488 16.009 Atomic orbital electron populations 1.22181 0.96265 1.01472 1.02130 1.20813 0.93233 0.97910 0.84213 0.89492 1.21924 0.95523 1.00717 0.97613 1.21165 0.94851 0.95710 0.98890 1.21620 0.95504 0.96370 1.01810 1.21528 0.96125 0.99541 0.98639 1.21527 1.00041 0.95373 0.98580 1.21529 0.96139 0.96518 1.01544 1.21574 0.95384 0.99520 0.98484 1.46056 1.70382 1.13410 1.09680 1.18315 0.77243 0.86444 0.82511 1.90724 1.49737 1.15610 1.84489 1.19480 1.18426 0.93529 0.93794 1.20778 0.95509 0.93370 0.96422 1.20283 1.14304 0.98145 0.94655 1.20739 0.96922 0.94260 0.96510 1.21227 1.11099 0.94231 0.98258 1.17562 0.88264 0.93792 0.89112 1.20149 1.11065 0.90364 1.21296 0.85936 1.26352 1.00289 0.94752 0.92667 1.69569 1.36571 1.06694 1.28985 0.86408 0.80760 0.79027 0.80427 1.19341 1.21672 1.16888 0.93047 0.92526 0.91875 0.91769 0.91013 0.90593 0.92394 0.91225 0.92250 0.91857 0.92474 0.92341 0.91970 0.92474 0.92289 0.92272 0.77701 0.88761 0.88622 0.88645 0.87646 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 2 C 0.14 2.09 2.45 -67.93 -0.17 1.92 16 3 H 0.09 1.48 5.82 -51.93 -0.30 1.18 16 4 C -0.12 -1.31 4.21 -26.73 -0.11 -1.43 16 5 C -0.09 -1.00 2.13 -90.62 -0.19 -1.19 16 6 C -0.12 -1.41 4.98 -26.73 -0.13 -1.54 16 7 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 8 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 9 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 10 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 11 N -0.74 -12.42 4.38 -54.88 -0.24 -12.66 16 12 C 0.56 12.54 7.69 -12.52 -0.10 12.44 16 13 O -0.53 -13.82 13.22 5.27 0.07 -13.75 16 14 C -0.25 -5.77 5.92 -104.37 -0.62 -6.39 16 15 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 16 C -0.25 -5.00 10.03 -39.37 -0.39 -5.40 16 17 C -0.07 -1.37 10.01 -39.60 -0.40 -1.77 16 18 C -0.23 -5.45 7.12 -38.88 -0.28 -5.72 16 19 C 0.12 3.03 5.02 -106.54 -0.54 2.49 16 20 C -0.40 -11.31 8.27 -37.81 -0.31 -11.62 16 21 H 0.12 3.82 6.02 -52.49 -0.32 3.50 16 22 C 0.08 2.14 5.47 -17.30 -0.09 2.04 16 23 N -0.79 -21.72 13.92 55.56 0.77 -20.95 16 24 Si 0.91 20.96 24.54 -169.99 -4.17 16.79 16 25 H -0.27 -5.88 6.59 56.52 0.37 -5.51 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.25 -5.82 6.93 56.52 0.39 -5.43 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.01 7.59 -51.93 -0.39 0.61 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.02 6.49 -51.93 -0.34 0.68 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.39 5.63 6.66 -40.82 -0.27 5.36 16 45 H 0.09 1.52 6.43 -52.48 -0.34 1.18 16 46 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 47 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 48 H 0.11 2.48 4.96 -52.49 -0.26 2.22 16 49 H 0.29 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -29.45 374.34 -10.05 -39.50 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.16 Total: 10.08 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -3.97 Total: -24.65 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.53 Total: -33.61 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.07 Total: -13.75 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.45 -10.05 -39.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601538466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.883 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds