Wall clock time and date at job start Tue Mar 31 2020 11:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47217 * 120.00104 * 2 1 3 5 5 C 1.52998 * 109.47433 * 184.88152 * 4 2 1 6 6 C 1.53000 * 109.46983 * 65.89244 * 5 4 2 7 7 C 1.52996 * 109.47299 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46902 * 299.99768 * 7 6 5 9 9 C 1.53004 * 109.46735 * 60.00315 * 8 7 6 10 10 C 1.52996 * 109.47168 * 299.99522 * 9 8 7 11 11 N 1.46498 * 109.47415 * 240.00234 * 2 1 3 12 12 C 1.34779 * 120.00406 * 84.99826 * 11 2 1 13 13 O 1.21613 * 119.99721 * 0.02562 * 12 11 2 14 14 C 1.47430 * 120.00188 * 180.02562 * 12 11 2 15 15 C 1.39226 * 120.28436 * 4.91498 * 14 12 11 16 16 C 1.38219 * 120.08924 * 180.02562 * 15 14 12 17 17 C 1.38819 * 120.67893 * 0.02562 * 16 15 14 18 18 C 1.37605 * 120.57113 * 0.02562 * 17 16 15 19 19 C 1.40702 * 119.87877 * 359.68125 * 18 17 16 20 20 C 1.40896 * 120.32906 * 180.30088 * 19 18 17 21 21 H 1.07998 * 120.00094 * 143.14895 * 20 19 18 22 22 C 1.40270 * 119.99564 * 323.14676 * 20 19 18 23 23 N 1.30626 * 120.00022 * 169.70285 * 22 20 19 24 24 Si 1.86803 * 120.00313 * 349.70096 * 22 20 19 25 25 H 1.48501 * 109.47211 * 88.89280 * 24 22 20 26 26 H 1.48499 * 109.47547 * 208.89880 * 24 22 20 27 27 H 1.48505 * 109.46887 * 328.89882 * 24 22 20 28 28 H 1.09006 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47420 * 299.99641 * 1 2 3 30 30 H 1.09002 * 109.47184 * 60.00392 * 1 2 3 31 31 H 1.09001 * 109.46816 * 64.88672 * 4 2 1 32 32 H 1.08993 * 109.47365 * 304.88755 * 4 2 1 33 33 H 1.09001 * 109.47425 * 305.89425 * 5 4 2 34 34 H 1.09001 * 109.46892 * 59.99855 * 6 5 4 35 35 H 1.09006 * 109.46960 * 300.00368 * 6 5 4 36 36 H 1.08997 * 109.47159 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47421 * 59.99990 * 7 6 5 38 38 H 1.08998 * 109.46934 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.47264 * 300.00318 * 8 7 6 40 40 H 1.09001 * 109.47242 * 59.99989 * 9 8 7 41 41 H 1.09006 * 109.46742 * 179.97438 * 9 8 7 42 42 H 1.09001 * 109.47421 * 300.00358 * 10 9 8 43 43 H 1.08997 * 109.47159 * 180.02562 * 10 9 8 44 44 H 0.97002 * 119.99938 * 265.00190 * 11 2 1 45 45 H 1.08003 * 119.95043 * 0.02562 * 15 14 12 46 46 H 1.08004 * 119.65905 * 179.97438 * 16 15 14 47 47 H 1.08008 * 119.71616 * 179.97438 * 17 16 15 48 48 H 1.08002 * 120.05598 * 179.97438 * 18 17 16 49 49 H 0.97007 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5650 -0.6159 1.3122 6 6 3.9671 0.8457 1.5198 7 6 5.4921 0.9513 1.5821 8 6 6.0145 0.1082 2.7472 9 6 5.6125 -1.3534 2.5395 10 6 4.0874 -1.4589 2.4772 11 7 2.0184 -0.6905 -1.1962 12 6 2.1471 -0.0182 -2.3572 13 8 1.8583 1.1619 -2.4117 14 6 2.6381 -0.7133 -3.5610 15 6 2.8733 -2.0853 -3.5328 16 6 3.3341 -2.7328 -4.6636 17 6 3.5682 -2.0289 -5.8370 18 6 3.3460 -0.6722 -5.8954 19 6 2.8711 0.0099 -4.7601 20 6 2.6343 1.3978 -4.8112 21 1 1.7965 1.8227 -4.2784 22 6 3.4869 2.2278 -5.5541 23 7 3.1605 3.4742 -5.7694 24 14 5.0890 1.5508 -6.2356 25 1 4.8487 0.9714 -7.5817 26 1 6.0855 2.6469 -6.3391 27 1 5.6064 0.4955 -5.3278 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7499 -1.7711 1.2065 32 1 1.6070 -0.2606 2.1370 33 1 3.9934 -0.9814 0.3789 34 1 3.5387 1.2113 2.4531 35 1 3.5952 1.4463 0.6895 36 1 5.7785 1.9924 1.7304 37 1 5.9201 0.5858 0.6486 38 1 7.1009 0.1838 2.7918 39 1 5.5865 0.4737 3.6807 40 1 6.0405 -1.7188 1.6060 41 1 5.9850 -1.9541 3.3693 42 1 3.6594 -1.0935 3.4106 43 1 3.8010 -2.5002 2.3296 44 1 2.2491 -1.6317 -1.1526 45 1 2.6955 -2.6443 -2.6259 46 1 3.5147 -3.7972 -4.6338 47 1 3.9287 -2.5505 -6.7114 48 1 3.5314 -0.1327 -6.8125 49 1 3.7500 4.0481 -6.2835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601538466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:13 Heat of formation + Delta-G solvation = -70.869142 kcal Electronic energy + Delta-G solvation = -27122.823882 eV Core-core repulsion = 23625.975619 eV Total energy + Delta-G solvation = -3496.848264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00366 -39.77104 -38.71205 -36.69548 -35.52326 -33.46254 -32.27759 -32.03374 -31.57528 -30.59930 -27.27209 -26.99072 -24.43428 -23.68886 -23.16495 -22.45726 -21.27451 -21.19972 -20.50212 -19.40773 -18.33298 -17.25071 -16.88279 -16.45450 -15.91362 -15.81023 -15.63963 -15.45716 -15.15879 -15.02062 -14.94819 -14.51112 -14.27671 -14.14007 -14.00087 -13.75114 -13.33825 -13.20351 -13.05789 -13.03422 -12.67297 -12.59664 -12.51045 -12.28874 -12.19967 -12.03204 -11.97352 -11.82070 -11.74639 -11.63179 -11.29573 -11.05986 -10.87202 -10.74061 -10.25889 -9.88952 -9.51175 -9.40149 -8.81893 -6.47770 0.36047 0.83100 1.21292 1.34832 1.43631 2.08466 2.30845 2.52448 2.72923 3.54385 3.65082 3.79875 3.87968 4.06099 4.21589 4.25907 4.26577 4.31207 4.39360 4.46163 4.51117 4.60572 4.65058 4.66340 4.68414 4.72827 4.79873 4.82963 4.84519 4.92064 4.97847 5.03422 5.07992 5.17136 5.21700 5.26981 5.30336 5.32621 5.36184 5.39250 5.44113 5.48231 5.53869 5.65687 5.68889 5.79566 5.88794 5.98303 6.27951 6.48699 6.70323 6.80229 6.98278 7.73182 8.22801 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.004201 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.239226 B = 6663.297882 C = 6935.175764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 H 0.053 0.947 4 C -0.107 4.107 5 C -0.085 4.085 6 C -0.115 4.115 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.105 4.105 11 N -0.717 5.717 12 C 0.555 3.445 13 O -0.579 6.579 14 C -0.264 4.264 15 C -0.040 4.040 16 C -0.229 4.229 17 C -0.063 4.063 18 C -0.250 4.250 19 C 0.100 3.900 20 C -0.450 4.450 21 H 0.070 0.930 22 C 0.036 3.964 23 N -0.852 5.852 24 Si 0.967 3.033 25 H -0.246 1.246 26 H -0.280 1.280 27 H -0.255 1.255 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.405 0.595 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.136 0.864 48 H 0.102 0.898 49 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -13.752 16.030 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.104 4.104 6 C -0.153 4.153 7 C -0.161 4.161 8 C -0.151 4.151 9 C -0.158 4.158 10 C -0.143 4.143 11 N -0.371 5.371 12 C 0.347 3.653 13 O -0.460 6.460 14 C -0.269 4.269 15 C -0.059 4.059 16 C -0.248 4.248 17 C -0.081 4.081 18 C -0.270 4.270 19 C 0.096 3.904 20 C -0.479 4.479 21 H 0.088 0.912 22 C -0.177 4.177 23 N -0.478 5.478 24 Si 0.789 3.211 25 H -0.170 1.170 26 H -0.206 1.206 27 H -0.179 1.179 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.242 0.758 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.154 0.846 48 H 0.120 0.880 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.614 -12.619 15.942 20.650 hybrid contribution 0.382 0.635 -0.873 1.145 sum 3.996 -11.984 15.068 19.663 Atomic orbital electron populations 1.22125 0.95374 1.02600 1.01352 1.21000 0.93902 0.96764 0.84914 0.92906 1.21873 0.95045 1.01714 0.95841 1.21131 0.95141 0.95060 0.99076 1.21598 0.95810 0.96947 1.00930 1.21538 0.95856 0.99882 0.98818 1.21503 1.00414 0.95403 0.97747 1.21548 0.96300 0.96171 1.01765 1.21534 0.95183 0.99820 0.97745 1.45821 1.68668 1.13878 1.08739 1.18481 0.76891 0.85962 0.83963 1.90729 1.51897 1.17966 1.85396 1.19914 1.17970 0.95482 0.93548 1.21233 0.94126 0.91737 0.98765 1.20950 1.10151 1.00402 0.93292 1.21251 0.95227 0.92957 0.98653 1.21319 1.12307 0.95880 0.97451 1.17827 0.88616 0.93116 0.90857 1.19891 1.11961 0.92225 1.23856 0.91222 1.27066 1.02990 0.94806 0.92837 1.69629 1.38366 1.08009 1.31843 0.85516 0.76894 0.78295 0.80351 1.17046 1.20648 1.17853 0.90804 0.90042 0.96001 0.89213 0.88880 0.92768 0.90876 0.95085 0.92635 0.93996 0.91912 0.91170 0.93065 0.90567 0.90949 0.90736 0.75832 0.84237 0.83754 0.84636 0.88034 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.48 71.98 0.68 -3.55 16 2 C 0.14 4.02 2.45 44.99 0.11 4.13 16 3 H 0.05 1.93 5.82 -2.39 -0.01 1.92 16 4 C -0.11 -2.04 4.21 30.59 0.13 -1.91 16 5 C -0.09 -1.78 2.13 -10.79 -0.02 -1.81 16 6 C -0.12 -2.83 4.98 30.59 0.15 -2.68 16 7 C -0.12 -2.92 5.92 30.59 0.18 -2.74 16 8 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 9 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 10 C -0.11 -1.61 5.20 30.59 0.16 -1.45 16 11 N -0.72 -23.81 4.38 -445.80 -1.95 -25.77 16 12 C 0.55 25.91 7.69 86.66 0.67 26.57 16 13 O -0.58 -33.32 13.22 -4.07 -0.05 -33.38 16 14 C -0.26 -12.40 5.92 -19.70 -0.12 -12.52 16 15 C -0.04 -1.44 9.52 22.50 0.21 -1.23 16 16 C -0.23 -7.69 10.03 22.40 0.22 -7.46 16 17 C -0.06 -2.35 10.01 22.26 0.22 -2.13 16 18 C -0.25 -11.73 7.12 22.72 0.16 -11.56 16 19 C 0.10 5.33 5.02 -21.11 -0.11 5.23 16 20 C -0.45 -27.67 8.27 23.42 0.19 -27.47 16 21 H 0.07 4.90 6.02 -2.91 -0.02 4.88 16 22 C 0.04 2.11 5.47 85.37 0.47 2.58 16 23 N -0.85 -50.83 13.92 21.88 0.30 -50.53 16 24 Si 0.97 44.97 24.54 68.60 1.68 46.65 16 25 H -0.25 -10.40 6.59 99.48 0.66 -9.75 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.25 -11.98 6.93 99.48 0.69 -11.29 16 28 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.37 7.59 -2.39 -0.02 1.35 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.03 0.99 6.49 -2.38 -0.02 0.97 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.40 10.59 6.66 -92.71 -0.62 9.98 16 45 H 0.14 3.71 6.43 -2.91 -0.02 3.69 16 46 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 47 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 48 H 0.10 4.76 4.96 -2.91 -0.01 4.75 16 49 H 0.29 15.59 8.29 -92.70 -0.77 14.82 16 Total: -1.00 -74.52 374.34 3.91 -70.60 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.25 Total: 34.02 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 3.68 Total: -41.60 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.65 Total: -76.29 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.05 Total: -33.38 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.68 Total: 46.65 kcal Total: -74.52 3.91 -70.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601538466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.264 kcal (2) G-P(sol) polarization free energy of solvation -74.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds