Wall clock time and date at job start Tue Mar 31 2020 11:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.53005 * 109.47038 * 119.99206 * 2 1 3 5 5 C 1.50695 * 109.47153 * 295.00223 * 4 2 1 6 6 H 1.07993 * 120.00157 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99521 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99600 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00234 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47360 * 89.99792 * 9 7 5 11 11 H 1.48505 * 109.46932 * 209.99939 * 9 7 5 12 12 H 1.48499 * 109.47085 * 329.99465 * 9 7 5 13 13 C 1.52996 * 109.47574 * 239.99346 * 2 1 3 14 14 N 1.46908 * 109.46659 * 64.99800 * 13 2 1 15 15 C 1.47017 * 110.99915 * 46.43911 * 14 13 2 16 16 C 1.53101 * 109.32588 * 182.78036 * 15 14 13 17 17 O 1.43098 * 109.20664 * 302.70125 * 16 15 14 18 18 C 1.42517 * 113.82265 * 57.80701 * 17 16 15 19 19 C 1.53957 * 110.01228 * 64.29736 * 18 17 16 20 20 C 1.54431 * 102.50265 * 144.99367 * 19 18 17 21 21 C 1.51722 * 105.02644 * 334.26895 * 20 19 18 22 22 C 1.38469 * 130.29920 * 196.89484 * 21 20 19 23 23 C 1.38100 * 120.24458 * 179.91864 * 22 21 20 24 24 C 1.38246 * 119.92464 * 0.02562 * 23 22 21 25 25 C 1.38088 * 119.93237 * 359.94729 * 24 23 22 26 26 C 1.38315 * 109.84627 * 16.77415 * 21 20 19 27 27 C 1.47101 * 110.99909 * 170.00143 * 14 13 2 28 28 H 1.09007 * 109.47082 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47352 * 300.00565 * 1 2 3 30 30 H 1.08993 * 109.46899 * 60.00645 * 1 2 3 31 31 H 1.09006 * 109.47010 * 55.00551 * 4 2 1 32 32 H 1.09000 * 109.47149 * 175.00027 * 4 2 1 33 33 H 0.97002 * 120.00433 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47192 * 305.00626 * 13 2 1 35 35 H 1.08995 * 109.47631 * 184.99689 * 13 2 1 36 36 H 1.09001 * 109.49049 * 302.73041 * 15 14 13 37 37 H 1.09001 * 109.49590 * 62.81901 * 15 14 13 38 38 H 1.08998 * 109.51790 * 62.62717 * 16 15 14 39 39 H 1.09002 * 109.51302 * 182.73209 * 16 15 14 40 40 H 1.09002 * 110.83589 * 263.30082 * 19 18 17 41 41 H 1.09003 * 110.83579 * 26.68844 * 19 18 17 42 42 H 1.09002 * 110.30127 * 93.05348 * 20 19 18 43 43 H 1.09005 * 110.29770 * 215.20303 * 20 19 18 44 44 H 1.08004 * 119.87910 * 359.89080 * 22 21 20 45 45 H 1.08008 * 120.04120 * 180.02562 * 23 22 21 46 46 H 1.08002 * 120.03931 * 179.97438 * 24 23 22 47 47 H 1.08005 * 119.86897 * 179.97438 * 25 24 23 48 48 H 1.09000 * 109.49462 * 58.50741 * 27 14 13 49 49 H 1.09004 * 109.49505 * 298.41366 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0799 0.9743 2.3756 7 6 1.9923 -0.4019 3.7284 8 7 1.6439 0.2771 4.7994 9 14 2.9627 -1.9885 3.9031 10 1 4.4161 -1.6850 3.8794 11 1 2.6144 -2.6426 5.1900 12 1 2.6288 -2.8993 2.7787 13 6 2.0401 -0.7214 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 1.9389 1.4693 -2.2779 16 6 1.4567 2.2311 -3.5153 17 8 2.0936 1.6920 -4.6778 18 6 1.8610 0.2989 -4.8677 19 6 0.3646 0.0448 -5.1252 20 6 0.3926 -1.1269 -6.1308 21 6 1.7319 -1.0098 -6.8340 22 6 2.1742 -1.5753 -8.0180 23 6 3.4535 -1.3241 -8.4736 24 6 4.2966 -0.5055 -7.7453 25 6 3.8574 0.0600 -6.5646 26 6 2.5744 -0.1894 -6.1059 27 6 2.3204 -0.4904 -3.6447 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6054 -1.7197 1.2954 32 1 3.1263 -0.7993 1.2058 33 1 1.8912 -0.0457 5.6801 34 1 1.6054 -1.7199 -1.2950 35 1 3.1264 -0.7995 -1.2055 36 1 1.4201 1.8434 -1.3953 37 1 3.0127 1.6131 -2.1576 38 1 0.3760 2.1253 -3.6099 39 1 1.7119 3.2862 -3.4156 40 1 -0.1432 -0.2458 -4.2054 41 1 -0.1076 0.9228 -5.5659 42 1 0.3247 -2.0789 -5.6044 43 1 -0.4240 -1.0305 -6.8465 44 1 1.5165 -2.2157 -8.5871 45 1 3.7950 -1.7667 -9.3977 46 1 5.2975 -0.3082 -8.0997 47 1 4.5171 0.6991 -5.9963 48 1 2.0624 -1.5417 -3.7722 49 1 3.4001 -0.3913 -3.5322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:55 Heat of formation + Delta-G solvation = -17.981642 kcal Electronic energy + Delta-G solvation = -26983.479830 eV Core-core repulsion = 23488.924941 eV Total energy + Delta-G solvation = -3494.554890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08679 -38.98526 -36.90039 -35.16339 -34.04013 -32.03515 -31.74814 -29.84001 -29.13381 -28.09267 -27.10350 -25.18734 -24.30437 -23.19017 -22.64255 -21.53366 -21.03540 -19.35878 -18.73255 -17.17220 -16.83344 -16.35907 -15.95745 -15.44547 -15.25552 -15.14095 -14.54531 -14.40046 -14.19745 -14.14660 -13.64664 -13.58066 -13.25640 -12.98361 -12.78088 -12.69256 -12.28210 -12.02681 -11.90922 -11.72960 -11.66914 -11.46212 -11.23287 -11.05863 -10.99494 -10.97114 -10.74430 -10.46329 -10.35452 -9.92797 -9.72223 -9.60612 -9.48113 -9.07602 -8.98925 -8.75627 -8.53313 -8.18731 -6.03866 -4.00965 1.09560 1.19559 3.29935 3.37739 3.41197 3.44197 3.75415 3.91938 4.21335 4.43256 4.45250 4.67999 4.78788 4.87572 4.89257 5.02101 5.07651 5.16477 5.21343 5.29164 5.30813 5.36759 5.43734 5.49921 5.54496 5.61922 5.69640 5.74158 5.78740 5.85590 5.88593 5.95674 5.97459 6.01652 6.07031 6.24907 6.27223 6.30839 6.34742 6.46047 6.48808 6.76963 6.79138 6.94482 7.05839 7.13543 7.17750 7.20489 7.27619 7.45032 7.80478 8.54830 9.01306 9.59058 11.09491 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.002889 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.900674 B = 9689.271364 C =10031.392719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 H 0.065 0.935 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.058 3.942 14 N -0.528 5.528 15 C 0.009 3.991 16 C 0.063 3.937 17 O -0.373 6.373 18 C 0.165 3.835 19 C -0.138 4.138 20 C -0.081 4.081 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.085 4.085 26 C -0.083 4.083 27 C 0.039 3.961 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.016 0.984 32 H 0.007 0.993 33 H 0.262 0.738 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.083 0.917 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -1.736 -26.597 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.252 5.252 15 C -0.119 4.119 16 C -0.014 4.014 17 O -0.292 6.292 18 C 0.126 3.874 19 C -0.175 4.175 20 C -0.118 4.118 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.103 4.103 26 C -0.084 4.084 27 C -0.090 4.090 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.102 0.898 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.149 -1.686 -26.573 26.627 hybrid contribution 1.465 -0.911 0.617 1.832 sum 1.614 -2.597 -25.957 26.136 Atomic orbital electron populations 1.21627 0.95121 1.00919 1.00641 1.21183 0.96450 0.99310 0.92927 0.91638 1.19610 0.95371 0.96274 0.93403 1.21105 1.35401 1.09511 0.89059 0.90843 1.25024 0.95683 0.96876 0.95967 1.69909 1.47147 1.39293 0.98021 0.86813 0.80597 0.84553 0.77505 1.20451 1.21453 1.19069 1.22381 0.97726 0.97659 0.89156 1.62320 1.57421 1.02595 1.02911 1.22930 1.00075 0.89201 0.99663 1.22734 0.97421 0.97328 0.83897 1.87939 1.74135 1.21945 1.45216 1.20538 0.93638 0.82006 0.91263 1.22837 0.95819 0.98484 1.00374 1.21130 0.93827 0.99513 0.97366 1.20676 0.96395 0.97031 0.94428 1.20591 0.96258 1.00642 0.95656 1.21063 0.93812 0.98579 0.99800 1.21049 0.99884 0.98288 0.95280 1.20669 0.94841 0.98765 0.95994 1.20065 0.94256 0.98527 0.95548 1.22544 0.96860 0.99448 0.90128 0.93950 0.92071 0.93859 0.96565 0.97424 0.92810 0.90920 0.95233 0.87999 0.94139 0.92089 0.88526 0.88383 0.90466 0.89835 0.90451 0.86148 0.85899 0.85851 0.86068 0.89835 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.70 37.16 0.32 -1.97 16 2 C -0.08 -1.52 1.82 -90.62 -0.16 -1.69 16 3 H 0.07 1.27 5.94 -51.93 -0.31 0.96 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.28 8.96 -34.44 -0.31 -14.59 16 6 H 0.07 2.19 7.30 -52.49 -0.38 1.81 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 9 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.06 0.93 4.67 -3.82 -0.02 0.92 16 14 N -0.53 -7.39 3.72 -234.52 -0.87 -8.27 16 15 C 0.01 0.13 4.79 -3.71 -0.02 0.11 16 16 C 0.06 0.75 6.75 37.21 0.25 1.00 16 17 O -0.37 -4.98 10.27 -35.23 -0.36 -5.34 16 18 C 0.17 2.02 0.90 -91.31 -0.08 1.93 16 19 C -0.14 -1.47 5.02 -25.48 -0.13 -1.60 16 20 C -0.08 -0.76 6.80 -26.63 -0.18 -0.94 16 21 C -0.09 -0.90 6.15 -104.00 -0.64 -1.54 16 22 C -0.11 -1.05 10.04 -39.55 -0.40 -1.44 16 23 C -0.11 -0.99 10.05 -39.63 -0.40 -1.39 16 24 C -0.13 -1.19 10.05 -39.63 -0.40 -1.59 16 25 C -0.08 -0.95 10.02 -39.53 -0.40 -1.34 16 26 C -0.08 -0.99 5.14 -104.34 -0.54 -1.53 16 27 C 0.04 0.50 4.28 -3.90 -0.02 0.49 16 28 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 29 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 30 H 0.04 0.69 7.32 -51.93 -0.38 0.31 16 31 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.10 1.45 5.48 -51.93 -0.28 1.17 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.10 7.42 -51.93 -0.39 0.72 16 41 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 48 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -30.72 373.62 -11.13 -41.85 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.33 Total: -0.28 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -3.30 Total: -23.68 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.10 Total: -35.26 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.36 Total: -5.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.72 -11.13 -41.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.870 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds