Wall clock time and date at job start Tue Mar 31 2020 11:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.53005 * 109.47038 * 119.99206 * 2 1 3 5 5 C 1.50695 * 109.47153 * 295.00223 * 4 2 1 6 6 H 1.07993 * 120.00157 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99521 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99600 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00234 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47360 * 89.99792 * 9 7 5 11 11 H 1.48505 * 109.46932 * 209.99939 * 9 7 5 12 12 H 1.48499 * 109.47085 * 329.99465 * 9 7 5 13 13 C 1.52996 * 109.47574 * 239.99346 * 2 1 3 14 14 N 1.46908 * 109.46659 * 64.99800 * 13 2 1 15 15 C 1.47017 * 110.99915 * 46.43911 * 14 13 2 16 16 C 1.53101 * 109.32588 * 182.78036 * 15 14 13 17 17 O 1.43098 * 109.20664 * 302.70125 * 16 15 14 18 18 C 1.42517 * 113.82265 * 57.80701 * 17 16 15 19 19 C 1.53957 * 110.01228 * 64.29736 * 18 17 16 20 20 C 1.54431 * 102.50265 * 144.99367 * 19 18 17 21 21 C 1.51722 * 105.02644 * 334.26895 * 20 19 18 22 22 C 1.38469 * 130.29920 * 196.89484 * 21 20 19 23 23 C 1.38100 * 120.24458 * 179.91864 * 22 21 20 24 24 C 1.38246 * 119.92464 * 0.02562 * 23 22 21 25 25 C 1.38088 * 119.93237 * 359.94729 * 24 23 22 26 26 C 1.38315 * 109.84627 * 16.77415 * 21 20 19 27 27 C 1.47101 * 110.99909 * 170.00143 * 14 13 2 28 28 H 1.09007 * 109.47082 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47352 * 300.00565 * 1 2 3 30 30 H 1.08993 * 109.46899 * 60.00645 * 1 2 3 31 31 H 1.09006 * 109.47010 * 55.00551 * 4 2 1 32 32 H 1.09000 * 109.47149 * 175.00027 * 4 2 1 33 33 H 0.97002 * 120.00433 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47192 * 305.00626 * 13 2 1 35 35 H 1.08995 * 109.47631 * 184.99689 * 13 2 1 36 36 H 1.09001 * 109.49049 * 302.73041 * 15 14 13 37 37 H 1.09001 * 109.49590 * 62.81901 * 15 14 13 38 38 H 1.08998 * 109.51790 * 62.62717 * 16 15 14 39 39 H 1.09002 * 109.51302 * 182.73209 * 16 15 14 40 40 H 1.09002 * 110.83589 * 263.30082 * 19 18 17 41 41 H 1.09003 * 110.83579 * 26.68844 * 19 18 17 42 42 H 1.09002 * 110.30127 * 93.05348 * 20 19 18 43 43 H 1.09005 * 110.29770 * 215.20303 * 20 19 18 44 44 H 1.08004 * 119.87910 * 359.89080 * 22 21 20 45 45 H 1.08008 * 120.04120 * 180.02562 * 23 22 21 46 46 H 1.08002 * 120.03931 * 179.97438 * 24 23 22 47 47 H 1.08005 * 119.86897 * 179.97438 * 25 24 23 48 48 H 1.09000 * 109.49462 * 58.50741 * 27 14 13 49 49 H 1.09004 * 109.49505 * 298.41366 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0799 0.9743 2.3756 7 6 1.9923 -0.4019 3.7284 8 7 1.6439 0.2771 4.7994 9 14 2.9627 -1.9885 3.9031 10 1 4.4161 -1.6850 3.8794 11 1 2.6144 -2.6426 5.1900 12 1 2.6288 -2.8993 2.7787 13 6 2.0401 -0.7214 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 1.9389 1.4693 -2.2779 16 6 1.4567 2.2311 -3.5153 17 8 2.0936 1.6920 -4.6778 18 6 1.8610 0.2989 -4.8677 19 6 0.3646 0.0448 -5.1252 20 6 0.3926 -1.1269 -6.1308 21 6 1.7319 -1.0098 -6.8340 22 6 2.1742 -1.5753 -8.0180 23 6 3.4535 -1.3241 -8.4736 24 6 4.2966 -0.5055 -7.7453 25 6 3.8574 0.0600 -6.5646 26 6 2.5744 -0.1894 -6.1059 27 6 2.3204 -0.4904 -3.6447 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6054 -1.7197 1.2954 32 1 3.1263 -0.7993 1.2058 33 1 1.8912 -0.0457 5.6801 34 1 1.6054 -1.7199 -1.2950 35 1 3.1264 -0.7995 -1.2055 36 1 1.4201 1.8434 -1.3953 37 1 3.0127 1.6131 -2.1576 38 1 0.3760 2.1253 -3.6099 39 1 1.7119 3.2862 -3.4156 40 1 -0.1432 -0.2458 -4.2054 41 1 -0.1076 0.9228 -5.5659 42 1 0.3247 -2.0789 -5.6044 43 1 -0.4240 -1.0305 -6.8465 44 1 1.5165 -2.2157 -8.5871 45 1 3.7950 -1.7667 -9.3977 46 1 5.2975 -0.3082 -8.0997 47 1 4.5171 0.6991 -5.9963 48 1 2.0624 -1.5417 -3.7722 49 1 3.4001 -0.3913 -3.5322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602475620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:53 Heat of formation + Delta-G solvation = -34.527603 kcal Electronic energy + Delta-G solvation = -26984.197317 eV Core-core repulsion = 23488.924941 eV Total energy + Delta-G solvation = -3495.272376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96992 -39.92424 -38.16412 -35.97130 -35.65175 -33.98404 -32.57313 -30.75911 -30.00179 -29.67047 -28.44892 -26.34509 -25.50653 -24.37810 -23.71363 -22.74862 -21.83666 -20.59436 -19.99198 -18.95698 -17.96861 -17.44940 -16.93783 -16.44966 -16.27244 -16.14306 -16.06759 -15.61669 -15.30086 -15.08332 -14.97092 -14.72597 -14.64685 -14.13076 -13.93552 -13.72319 -13.55781 -13.48209 -13.16470 -12.85480 -12.77954 -12.63377 -12.47035 -12.39201 -12.23195 -12.01108 -11.87454 -11.81524 -11.71759 -11.52035 -11.36991 -11.20276 -10.98629 -10.74443 -10.59462 -9.75288 -9.52024 -9.35670 -8.26961 -6.28978 0.35718 0.46943 1.34358 1.36082 1.47589 2.36345 2.61842 2.78979 2.94728 3.08393 3.43996 3.60527 3.72913 3.96021 3.98804 4.06615 4.15683 4.18179 4.21303 4.23144 4.33376 4.38143 4.42797 4.49826 4.55716 4.62398 4.65918 4.75034 4.76036 4.84541 4.87823 4.92109 4.94664 4.98930 5.09063 5.10444 5.12114 5.19045 5.27942 5.36767 5.39210 5.51786 5.53576 5.59960 5.67846 5.69901 5.70702 5.94388 5.98997 6.07753 6.24467 6.33435 6.78385 7.34535 8.89611 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.002889 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.900674 B = 9689.271364 C =10031.392719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 H 0.057 0.943 4 C -0.006 4.006 5 C -0.516 4.516 6 H 0.037 0.963 7 C 0.002 3.998 8 N -0.952 5.952 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.068 3.932 14 N -0.522 5.522 15 C 0.010 3.990 16 C 0.066 3.934 17 O -0.388 6.388 18 C 0.163 3.837 19 C -0.133 4.133 20 C -0.077 4.077 21 C -0.095 4.095 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.105 4.105 26 C -0.109 4.109 27 C 0.043 3.957 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.010 0.990 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.094 0.906 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.144 0.856 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.113 0.887 48 H 0.091 0.909 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 -3.672 -29.424 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.044 4.044 5 C -0.554 4.554 6 H 0.055 0.945 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.170 1.170 13 C -0.059 4.059 14 N -0.246 5.246 15 C -0.118 4.118 16 C -0.010 4.010 17 O -0.307 6.307 18 C 0.124 3.876 19 C -0.171 4.171 20 C -0.113 4.113 21 C -0.095 4.095 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.149 4.149 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.085 4.085 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.112 0.888 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.162 0.838 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.131 0.869 48 H 0.109 0.891 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.345 -3.619 -29.428 29.651 hybrid contribution 1.400 -0.219 1.446 2.025 sum 1.746 -3.838 -27.982 28.297 Atomic orbital electron populations 1.21512 0.94453 1.01067 1.00250 1.21041 0.96915 0.98693 0.92634 0.92505 1.19564 0.95461 0.96059 0.93350 1.21415 1.34284 1.08645 0.91058 0.94457 1.25965 0.97046 1.00764 0.95609 1.70062 1.49078 1.41544 0.98698 0.85735 0.79102 0.80202 0.78062 1.19611 1.21144 1.17045 1.22165 0.97305 0.97810 0.88643 1.62323 1.57283 1.02566 1.02464 1.22926 0.99252 0.89256 1.00375 1.22781 0.97761 0.97800 0.82662 1.87930 1.74550 1.22805 1.45465 1.20633 0.94771 0.81184 0.91046 1.22779 0.94504 0.99189 1.00629 1.21133 0.93874 0.99053 0.97282 1.20904 0.96656 0.96985 0.94937 1.20941 0.96885 1.00448 0.95243 1.21449 0.93456 0.97721 1.00477 1.21333 1.01011 0.97964 0.94616 1.20800 0.94891 0.99577 0.97043 1.20182 0.94940 0.99848 0.95973 1.22545 0.95917 1.00058 0.89965 0.93449 0.95125 0.91493 0.96234 0.97215 0.92693 0.90017 0.95712 0.88836 0.95394 0.91236 0.87002 0.88870 0.90479 0.89131 0.88740 0.83793 0.83094 0.83931 0.86897 0.89091 0.95574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.70 71.98 0.63 -3.54 16 2 C -0.07 -2.80 1.82 -10.79 -0.02 -2.82 16 3 H 0.06 2.24 5.94 -2.39 -0.01 2.23 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.19 16 5 C -0.52 -29.42 8.96 25.60 0.23 -29.19 16 6 H 0.04 2.33 7.30 -2.91 -0.02 2.31 16 7 C 0.00 0.14 5.47 84.66 0.46 0.60 16 8 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 9 Si 0.94 44.66 27.47 68.60 1.88 46.55 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 13 C 0.07 2.12 4.67 86.30 0.40 2.53 16 14 N -0.52 -14.11 3.72 -895.89 -3.34 -17.45 16 15 C 0.01 0.27 4.79 86.31 0.41 0.68 16 16 C 0.07 1.53 6.75 72.02 0.49 2.01 16 17 O -0.39 -10.13 10.27 -148.98 -1.53 -11.66 16 18 C 0.16 3.83 0.90 -11.24 -0.01 3.82 16 19 C -0.13 -2.63 5.02 31.40 0.16 -2.47 16 20 C -0.08 -1.24 6.80 30.66 0.21 -1.03 16 21 C -0.09 -1.81 6.15 -19.46 -0.12 -1.93 16 22 C -0.12 -1.82 10.04 22.29 0.22 -1.60 16 23 C -0.11 -1.64 10.05 22.24 0.22 -1.41 16 24 C -0.13 -2.22 10.05 22.24 0.22 -2.00 16 25 C -0.10 -2.28 10.02 22.30 0.22 -2.06 16 26 C -0.11 -2.48 5.14 -19.68 -0.10 -2.58 16 27 C 0.04 1.09 4.28 86.14 0.37 1.46 16 28 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.03 1.26 6.95 -2.39 -0.02 1.25 16 30 H 0.07 2.07 7.32 -2.39 -0.02 2.05 16 31 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 32 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.09 2.67 5.48 -2.39 -0.01 2.66 16 37 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.48 7.34 -2.39 -0.02 1.46 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.09 1.92 7.42 -2.39 -0.02 1.90 16 41 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 45 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 46 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 47 H 0.11 2.50 8.06 -2.91 -0.02 2.48 16 48 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -67.26 373.62 2.28 -64.98 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.85 Total: 17.06 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 4.10 Total: -39.72 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -3.04 Total: -77.20 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.53 Total: -11.66 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Total: -67.26 2.28 -64.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.456 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds