Wall clock time and date at job start Tue Mar 31 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46996 * 2 1 4 4 C 1.35904 * 116.99933 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05594 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94198 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.05961 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.94869 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.88305 * 181.79330 * 8 7 6 10 10 C 1.54326 * 110.02403 * 302.91336 * 8 7 6 11 11 C 1.55133 * 103.02240 * 141.76518 * 10 8 7 12 12 C 1.54909 * 101.65321 * 324.34442 * 11 10 8 13 13 N 1.47445 * 109.88900 * 60.75999 * 8 7 6 14 14 C 1.46897 * 110.99947 * 3.69223 * 13 8 7 15 15 C 1.52998 * 109.47319 * 166.90805 * 14 13 8 16 16 C 1.50700 * 115.56455 * 277.27934 * 15 14 13 17 17 H 1.07997 * 120.00351 * 140.05710 * 16 15 14 18 18 C 1.37875 * 119.99787 * 320.05954 * 16 15 14 19 19 N 1.31512 * 120.00046 * 166.35200 * 18 16 15 20 20 Si 1.86805 * 120.00009 * 346.34985 * 18 16 15 21 21 H 1.48506 * 109.46836 * 95.75055 * 20 18 16 22 22 H 1.48497 * 109.47464 * 215.74858 * 20 18 16 23 23 H 1.48501 * 109.47230 * 335.75414 * 20 18 16 24 24 C 1.53001 * 117.49731 * 62.96281 * 15 14 13 25 25 C 1.52998 * 60.03135 * 107.50251 * 24 15 14 26 26 C 1.38272 * 120.11274 * 0.27803 * 7 6 5 27 27 C 1.38144 * 120.04831 * 359.45004 * 26 7 6 28 28 H 1.08996 * 109.46985 * 59.99923 * 1 2 3 29 29 H 1.08995 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46954 * 300.00174 * 1 2 3 31 31 H 1.08995 * 109.47142 * 240.00069 * 2 1 3 32 32 H 1.08996 * 109.46985 * 120.00077 * 2 1 3 33 33 H 1.08002 * 120.02887 * 359.94736 * 5 4 3 34 34 H 1.08001 * 119.97277 * 180.02562 * 6 5 4 35 35 H 1.09005 * 110.70135 * 260.14998 * 10 8 7 36 36 H 1.09002 * 110.70180 * 23.20022 * 10 8 7 37 37 H 1.08995 * 110.99356 * 82.43598 * 11 10 8 38 38 H 1.08995 * 110.99086 * 206.25672 * 11 10 8 39 39 H 1.09003 * 110.37554 * 278.24785 * 12 11 10 40 40 H 1.08998 * 110.37588 * 155.89950 * 12 11 10 41 41 H 1.09004 * 109.47165 * 46.90587 * 14 13 8 42 42 H 1.09001 * 109.46916 * 286.91092 * 14 13 8 43 43 H 0.97012 * 119.99838 * 179.97438 * 19 18 16 44 44 H 1.09000 * 117.50087 * 0.02562 * 24 15 14 45 45 H 1.08998 * 117.50209 * 214.99956 * 24 15 14 46 46 H 1.09004 * 117.50037 * 107.47477 * 25 24 15 47 47 H 1.09004 * 117.50346 * 252.47289 * 25 24 15 48 48 H 1.07995 * 119.97448 * 179.70319 * 26 7 6 49 49 H 1.08000 * 120.02835 * 180.27139 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2550 2.9851 -0.0001 7 6 6.0962 1.8878 0.0000 8 6 7.5902 2.0852 0.0005 9 1 8.0919 1.1181 -0.0316 10 6 8.0113 2.9358 -1.2164 11 6 9.1383 3.8339 -0.6419 12 6 8.6278 4.0944 0.7973 13 7 7.9983 2.8221 1.2107 14 6 6.8484 3.0655 2.0917 15 6 7.3451 3.5297 3.4623 16 6 7.7670 2.4337 4.4066 17 1 8.6405 2.5630 5.0283 18 6 7.0378 1.2656 4.4766 19 7 7.5390 0.2131 5.0854 20 14 5.3380 1.1781 3.7069 21 1 5.4410 0.5965 2.3444 22 1 4.4586 0.3236 4.5446 23 1 4.7631 2.5445 3.6197 24 6 8.1146 4.8507 3.5245 25 6 6.6873 4.7713 4.0696 26 6 5.5690 0.6096 -0.0058 27 6 4.1998 0.4260 -0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2285 3.6643 -0.0001 34 1 5.6693 3.9825 0.0008 35 1 8.3938 2.3015 -2.0161 36 1 7.1765 3.5401 -1.5716 37 1 10.0909 3.3044 -0.6285 38 1 9.2189 4.7654 -1.2021 39 1 7.8930 4.8995 0.7995 40 1 9.4606 4.3377 1.4571 41 1 6.2763 2.1446 2.2053 42 1 6.2131 3.8363 1.6552 43 1 7.0258 -0.6087 5.1350 44 1 8.2666 5.3892 2.5891 45 1 8.9262 4.9269 4.2482 46 1 6.5597 4.7947 5.1519 47 1 5.9004 5.2577 3.4930 48 1 6.2281 -0.2459 -0.0106 49 1 3.7884 -0.5726 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602756266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:16 Heat of formation + Delta-G solvation = 41.162560 kcal Electronic energy + Delta-G solvation = -28108.146622 eV Core-core repulsion = 24616.156417 eV Total energy + Delta-G solvation = -3491.990204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 4.86 seconds Orbital eigenvalues (eV) -40.58768 -39.28961 -37.07921 -36.11627 -32.26476 -32.04038 -31.35801 -30.75822 -30.39679 -27.06604 -26.49576 -24.67168 -23.98533 -22.31182 -21.82177 -21.57750 -20.54859 -19.62250 -18.99664 -18.20427 -16.50336 -16.17628 -16.04627 -15.61584 -15.29326 -15.19184 -14.44488 -14.21412 -13.67375 -13.55458 -13.43937 -13.28239 -13.12838 -13.03680 -12.82045 -12.50146 -12.24509 -12.12113 -11.81130 -11.74326 -11.54538 -11.39016 -11.00307 -10.92840 -10.81605 -10.73455 -10.48725 -10.43124 -10.24423 -10.04037 -9.65488 -9.27747 -9.19926 -8.72534 -8.54947 -8.17863 -7.90252 -7.50089 -6.01543 -3.91992 1.50612 1.58330 3.19122 3.35325 3.46514 3.53144 3.87209 4.49427 4.52851 4.76050 4.77028 4.83278 4.92713 4.95588 4.98263 5.06124 5.09312 5.16563 5.31810 5.35613 5.49315 5.52820 5.58277 5.60507 5.70724 5.74806 5.80996 5.85777 5.90348 5.96331 6.03092 6.05287 6.09835 6.21119 6.28095 6.34102 6.40828 6.42880 6.44475 6.53133 6.58104 6.68816 6.85071 6.86411 6.89166 7.17918 7.23898 7.49107 7.60589 7.79667 7.91583 8.63789 9.03364 9.64901 11.10429 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.006093 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.508860 B = 4594.708774 C = 5826.132092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.319 6.319 4 C 0.123 3.877 5 C -0.157 4.157 6 C -0.070 4.070 7 C -0.128 4.128 8 C 0.111 3.889 9 H 0.089 0.911 10 C -0.133 4.133 11 C -0.132 4.132 12 C 0.044 3.956 13 N -0.493 5.493 14 C 0.078 3.922 15 C 0.022 3.978 16 C -0.468 4.468 17 H 0.073 0.927 18 C 0.080 3.920 19 N -0.893 5.893 20 Si 0.866 3.134 21 H -0.253 1.253 22 H -0.306 1.306 23 H -0.266 1.266 24 C -0.193 4.193 25 C -0.214 4.214 26 C -0.055 4.055 27 C -0.210 4.210 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.125 0.875 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 2.265 -15.421 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.233 6.233 4 C 0.078 3.922 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.129 4.129 8 C 0.004 3.996 9 H 0.107 0.893 10 C -0.171 4.171 11 C -0.170 4.170 12 C -0.084 4.084 13 N -0.216 5.216 14 C -0.049 4.049 15 C 0.020 3.980 16 C -0.505 4.505 17 H 0.091 0.909 18 C -0.122 4.122 19 N -0.530 5.530 20 Si 0.696 3.304 21 H -0.179 1.179 22 H -0.234 1.234 23 H -0.191 1.191 24 C -0.230 4.230 25 C -0.253 4.253 26 C -0.073 4.073 27 C -0.228 4.228 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.306 1.899 -15.065 16.851 hybrid contribution -1.514 0.088 -0.495 1.595 sum -8.819 1.987 -15.560 17.996 Atomic orbital electron populations 1.21765 0.92851 1.02732 1.03437 1.22759 0.95741 0.82305 1.01445 1.86029 1.19305 1.29021 1.88935 1.18913 0.81983 0.94174 0.97112 1.20294 0.94978 0.94734 1.07530 1.20802 0.92157 0.98595 0.97255 1.20123 0.96324 0.93200 1.03246 1.21490 0.89181 0.99172 0.89801 0.89258 1.22898 0.98513 0.98284 0.97447 1.22759 0.98746 0.99292 0.96158 1.23288 0.98990 0.91343 0.94776 1.63770 1.27720 1.17948 1.12163 1.22563 0.90542 0.99368 0.92378 1.19327 0.97908 0.87906 0.92827 1.20246 1.12172 0.97344 1.20757 0.90877 1.24897 0.97611 0.94938 0.94770 1.69963 1.36951 1.01663 1.44453 0.87196 0.85098 0.78548 0.79543 1.17939 1.23434 1.19132 1.22940 0.94465 1.04453 1.01186 1.23202 0.94347 1.07669 1.00042 1.20777 0.94187 0.96790 0.95595 1.21139 0.94376 0.97791 1.09533 0.91626 0.90459 0.91491 0.92124 0.92049 0.85487 0.85712 0.91060 0.91446 0.90641 0.91367 0.94332 0.89586 0.90173 0.95791 0.92891 0.90615 0.90241 0.89886 0.91918 0.85723 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.60 5.46 37.16 0.20 0.80 16 3 O -0.32 -4.76 10.14 -19.44 -0.20 -4.96 16 4 C 0.12 2.00 6.69 -39.22 -0.26 1.74 16 5 C -0.16 -2.53 9.99 -39.43 -0.39 -2.93 16 6 C -0.07 -1.14 6.20 -39.61 -0.25 -1.39 16 7 C -0.13 -2.17 3.05 -104.60 -0.32 -2.48 16 8 C 0.11 1.86 3.63 -67.87 -0.25 1.61 16 9 H 0.09 1.51 7.90 -51.93 -0.41 1.10 16 10 C -0.13 -1.74 6.36 -24.91 -0.16 -1.90 16 11 C -0.13 -1.69 7.08 -24.60 -0.17 -1.86 16 12 C 0.04 0.71 4.70 -2.29 -0.01 0.70 16 13 N -0.49 -9.66 5.14 -224.71 -1.16 -10.82 16 14 C 0.08 1.70 2.54 -3.83 -0.01 1.69 16 15 C 0.02 0.52 1.31 -155.62 -0.20 0.32 16 16 C -0.47 -13.54 9.53 -34.44 -0.33 -13.87 16 17 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 18 C 0.08 2.35 5.41 -17.82 -0.10 2.26 16 19 N -0.89 -27.71 13.96 55.43 0.77 -26.94 16 20 Si 0.87 22.27 24.41 -169.99 -4.15 18.12 16 21 H -0.25 -5.98 3.98 56.52 0.22 -5.75 16 22 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 23 H -0.27 -6.87 6.88 56.52 0.39 -6.48 16 24 C -0.19 -4.06 8.65 -26.73 -0.23 -4.29 16 25 C -0.21 -4.74 9.88 -26.70 -0.26 -5.01 16 26 C -0.05 -0.91 7.63 -39.60 -0.30 -1.22 16 27 C -0.21 -3.33 8.63 -39.43 -0.34 -3.67 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 33 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.13 1.92 6.67 -52.49 -0.35 1.57 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.85 6.88 -51.93 -0.36 0.49 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.61 6.70 -51.93 -0.35 0.26 16 40 H 0.09 1.46 7.03 -51.93 -0.36 1.09 16 41 H 0.08 1.87 1.15 -51.93 -0.06 1.81 16 42 H 0.02 0.50 4.65 -51.93 -0.24 0.26 16 43 H 0.26 7.64 8.31 -40.81 -0.34 7.30 16 44 H 0.08 1.39 5.23 -51.93 -0.27 1.12 16 45 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 46 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 47 H 0.06 1.28 8.07 -51.93 -0.42 0.86 16 48 H 0.12 1.92 7.95 -52.49 -0.42 1.50 16 49 H 0.12 1.68 6.30 -52.49 -0.33 1.35 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -32.43 362.03 -10.19 -42.62 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.92 Total: 6.95 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: -3.00 Total: -30.43 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.38 Total: -37.76 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.15 Total: 18.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.43 -10.19 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602756266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.786 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.86 seconds