Wall clock time and date at job start Tue Mar 31 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46996 * 2 1 4 4 C 1.35904 * 116.99933 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05594 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94198 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.05961 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.94869 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.88305 * 181.79330 * 8 7 6 10 10 C 1.54326 * 110.02403 * 302.91336 * 8 7 6 11 11 C 1.55133 * 103.02240 * 141.76518 * 10 8 7 12 12 C 1.54909 * 101.65321 * 324.34442 * 11 10 8 13 13 N 1.47445 * 109.88900 * 60.75999 * 8 7 6 14 14 C 1.46897 * 110.99947 * 3.69223 * 13 8 7 15 15 C 1.52998 * 109.47319 * 166.90805 * 14 13 8 16 16 C 1.50700 * 115.56455 * 277.27934 * 15 14 13 17 17 H 1.07997 * 120.00351 * 140.05710 * 16 15 14 18 18 C 1.37875 * 119.99787 * 320.05954 * 16 15 14 19 19 N 1.31512 * 120.00046 * 166.35200 * 18 16 15 20 20 Si 1.86805 * 120.00009 * 346.34985 * 18 16 15 21 21 H 1.48506 * 109.46836 * 95.75055 * 20 18 16 22 22 H 1.48497 * 109.47464 * 215.74858 * 20 18 16 23 23 H 1.48501 * 109.47230 * 335.75414 * 20 18 16 24 24 C 1.53001 * 117.49731 * 62.96281 * 15 14 13 25 25 C 1.52998 * 60.03135 * 107.50251 * 24 15 14 26 26 C 1.38272 * 120.11274 * 0.27803 * 7 6 5 27 27 C 1.38144 * 120.04831 * 359.45004 * 26 7 6 28 28 H 1.08996 * 109.46985 * 59.99923 * 1 2 3 29 29 H 1.08995 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46954 * 300.00174 * 1 2 3 31 31 H 1.08995 * 109.47142 * 240.00069 * 2 1 3 32 32 H 1.08996 * 109.46985 * 120.00077 * 2 1 3 33 33 H 1.08002 * 120.02887 * 359.94736 * 5 4 3 34 34 H 1.08001 * 119.97277 * 180.02562 * 6 5 4 35 35 H 1.09005 * 110.70135 * 260.14998 * 10 8 7 36 36 H 1.09002 * 110.70180 * 23.20022 * 10 8 7 37 37 H 1.08995 * 110.99356 * 82.43598 * 11 10 8 38 38 H 1.08995 * 110.99086 * 206.25672 * 11 10 8 39 39 H 1.09003 * 110.37554 * 278.24785 * 12 11 10 40 40 H 1.08998 * 110.37588 * 155.89950 * 12 11 10 41 41 H 1.09004 * 109.47165 * 46.90587 * 14 13 8 42 42 H 1.09001 * 109.46916 * 286.91092 * 14 13 8 43 43 H 0.97012 * 119.99838 * 179.97438 * 19 18 16 44 44 H 1.09000 * 117.50087 * 0.02562 * 24 15 14 45 45 H 1.08998 * 117.50209 * 214.99956 * 24 15 14 46 46 H 1.09004 * 117.50037 * 107.47477 * 25 24 15 47 47 H 1.09004 * 117.50346 * 252.47289 * 25 24 15 48 48 H 1.07995 * 119.97448 * 179.70319 * 26 7 6 49 49 H 1.08000 * 120.02835 * 180.27139 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2550 2.9851 -0.0001 7 6 6.0962 1.8878 0.0000 8 6 7.5902 2.0852 0.0005 9 1 8.0919 1.1181 -0.0316 10 6 8.0113 2.9358 -1.2164 11 6 9.1383 3.8339 -0.6419 12 6 8.6278 4.0944 0.7973 13 7 7.9983 2.8221 1.2107 14 6 6.8484 3.0655 2.0917 15 6 7.3451 3.5297 3.4623 16 6 7.7670 2.4337 4.4066 17 1 8.6405 2.5630 5.0283 18 6 7.0378 1.2656 4.4766 19 7 7.5390 0.2131 5.0854 20 14 5.3380 1.1781 3.7069 21 1 5.4410 0.5965 2.3444 22 1 4.4586 0.3236 4.5446 23 1 4.7631 2.5445 3.6197 24 6 8.1146 4.8507 3.5245 25 6 6.6873 4.7713 4.0696 26 6 5.5690 0.6096 -0.0058 27 6 4.1998 0.4260 -0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2285 3.6643 -0.0001 34 1 5.6693 3.9825 0.0008 35 1 8.3938 2.3015 -2.0161 36 1 7.1765 3.5401 -1.5716 37 1 10.0909 3.3044 -0.6285 38 1 9.2189 4.7654 -1.2021 39 1 7.8930 4.8995 0.7995 40 1 9.4606 4.3377 1.4571 41 1 6.2763 2.1446 2.2053 42 1 6.2131 3.8363 1.6552 43 1 7.0258 -0.6087 5.1350 44 1 8.2666 5.3892 2.5891 45 1 8.9262 4.9269 4.2482 46 1 6.5597 4.7947 5.1519 47 1 5.9004 5.2577 3.4930 48 1 6.2281 -0.2459 -0.0106 49 1 3.7884 -0.5726 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602756266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:14 Heat of formation + Delta-G solvation = 20.917027 kcal Electronic energy + Delta-G solvation = -28109.024534 eV Core-core repulsion = 24616.156417 eV Total energy + Delta-G solvation = -3492.868117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.82530 -40.48828 -38.49475 -37.55480 -34.29946 -33.18631 -32.63598 -31.91636 -31.53994 -28.47963 -28.13918 -26.38154 -25.04408 -23.51150 -23.19934 -22.86603 -21.82969 -20.96514 -20.83259 -19.34186 -18.32355 -17.40576 -17.19889 -17.05660 -16.85602 -16.47390 -15.65963 -15.45873 -15.38518 -15.04750 -14.88210 -14.52482 -14.36966 -14.31541 -14.12332 -13.73464 -13.51254 -13.33654 -13.18831 -12.98648 -12.94085 -12.64704 -12.58980 -12.29382 -12.16188 -11.98003 -11.82452 -11.75078 -11.55506 -11.49865 -11.40400 -11.25436 -11.06940 -10.44776 -10.28401 -9.87460 -9.20603 -8.84294 -8.29118 -6.22411 0.30247 0.36044 1.32162 1.35528 1.45351 2.19907 2.34528 2.64847 2.88331 3.21347 3.60874 3.67627 3.71268 3.85590 3.86952 3.95928 3.98728 4.09548 4.21584 4.24641 4.28050 4.30538 4.33201 4.38621 4.51661 4.55050 4.59016 4.61064 4.68562 4.82587 4.86122 4.88922 4.91262 4.93197 5.00572 5.06061 5.09515 5.12914 5.14639 5.21100 5.24368 5.31243 5.40231 5.42741 5.50833 5.64139 5.72888 5.75235 6.25441 6.33397 6.38831 6.40981 6.75795 7.37105 8.87037 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.006093 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.508860 B = 4594.708774 C = 5826.132092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.330 6.330 4 C 0.114 3.886 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.138 4.138 8 C 0.108 3.892 9 H 0.077 0.923 10 C -0.122 4.122 11 C -0.120 4.120 12 C 0.039 3.961 13 N -0.524 5.524 14 C 0.089 3.911 15 C -0.011 4.011 16 C -0.473 4.473 17 H 0.025 0.975 18 C 0.028 3.972 19 N -0.943 5.943 20 Si 0.930 3.070 21 H -0.226 1.226 22 H -0.319 1.319 23 H -0.263 1.263 24 C -0.171 4.171 25 C -0.208 4.208 26 C -0.074 4.074 27 C -0.215 4.215 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.262 0.738 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.128 0.872 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 3.679 -18.336 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.244 6.244 4 C 0.069 3.931 5 C -0.184 4.184 6 C -0.093 4.093 7 C -0.139 4.139 8 C 0.000 4.000 9 H 0.095 0.905 10 C -0.160 4.160 11 C -0.158 4.158 12 C -0.088 4.088 13 N -0.247 5.247 14 C -0.037 4.037 15 C -0.013 4.013 16 C -0.511 4.511 17 H 0.044 0.956 18 C -0.170 4.170 19 N -0.582 5.582 20 Si 0.759 3.241 21 H -0.151 1.151 22 H -0.249 1.249 23 H -0.188 1.188 24 C -0.208 4.208 25 C -0.246 4.246 26 C -0.093 4.093 27 C -0.234 4.234 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.146 0.854 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.808 3.334 -18.003 20.318 hybrid contribution -0.969 -0.351 0.474 1.134 sum -9.777 2.982 -17.529 20.291 Atomic orbital electron populations 1.21798 0.90918 1.04284 1.03347 1.23081 0.97333 0.80955 1.01949 1.86030 1.18566 1.31110 1.88724 1.19104 0.82702 0.94393 0.96914 1.20577 0.95281 0.95400 1.07162 1.20927 0.92229 0.98872 0.97242 1.20222 0.96459 0.93566 1.03640 1.21510 0.89214 0.98993 0.90270 0.90532 1.22848 0.98859 0.98050 0.96269 1.22724 0.98383 1.00617 0.94065 1.23319 0.98588 0.90286 0.96644 1.63622 1.27317 1.20010 1.13777 1.22293 0.91285 0.98756 0.91402 1.19344 1.00738 0.87592 0.93599 1.20455 1.10479 0.99199 1.20926 0.95625 1.25638 1.01232 0.94515 0.95574 1.70098 1.38670 1.02492 1.46972 0.86199 0.79900 0.78385 0.79661 1.15135 1.24908 1.18767 1.22972 0.93582 1.02063 1.02153 1.23198 0.95816 1.05845 0.99737 1.20990 0.94812 0.97132 0.96361 1.21379 0.94124 0.98824 1.09070 0.91114 0.88092 0.92161 0.90613 0.92519 0.84007 0.84588 0.89231 0.90418 0.90692 0.88407 0.93322 0.90934 0.91959 0.94082 0.92883 0.87235 0.91361 0.91144 0.89230 0.85386 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.04 0.85 5.46 71.98 0.39 1.24 16 3 O -0.33 -9.15 10.14 -92.47 -0.94 -10.09 16 4 C 0.11 3.46 6.69 22.51 0.15 3.61 16 5 C -0.17 -4.92 9.99 22.37 0.22 -4.70 16 6 C -0.07 -2.23 6.20 22.25 0.14 -2.09 16 7 C -0.14 -4.39 3.05 -19.85 -0.06 -4.45 16 8 C 0.11 3.39 3.63 44.51 0.16 3.55 16 9 H 0.08 2.54 7.90 -2.39 -0.02 2.53 16 10 C -0.12 -2.77 6.36 31.78 0.20 -2.57 16 11 C -0.12 -2.65 7.08 31.98 0.23 -2.43 16 12 C 0.04 1.15 4.70 86.77 0.41 1.56 16 13 N -0.52 -19.71 5.14 -864.86 -4.45 -24.15 16 14 C 0.09 3.75 2.54 86.30 0.22 3.97 16 15 C -0.01 -0.55 1.31 -52.90 -0.07 -0.62 16 16 C -0.47 -28.30 9.53 25.60 0.24 -28.06 16 17 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 18 C 0.03 1.69 5.41 84.65 0.46 2.14 16 19 N -0.94 -60.93 13.96 21.45 0.30 -60.63 16 20 Si 0.93 47.16 24.41 68.60 1.67 48.83 16 21 H -0.23 -10.38 3.98 99.48 0.40 -9.98 16 22 H -0.32 -16.69 7.11 99.48 0.71 -15.99 16 23 H -0.26 -13.03 6.88 99.48 0.68 -12.34 16 24 C -0.17 -6.92 8.65 30.59 0.26 -6.66 16 25 C -0.21 -8.84 9.88 30.62 0.30 -8.54 16 26 C -0.07 -2.36 7.63 22.26 0.17 -2.19 16 27 C -0.22 -6.42 8.63 22.37 0.19 -6.23 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.31 7.66 -2.39 -0.02 1.29 16 32 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 33 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.14 3.67 6.67 -2.91 -0.02 3.65 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.71 16 36 H 0.08 1.63 6.88 -2.39 -0.02 1.62 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.35 6.70 -2.39 -0.02 1.33 16 40 H 0.07 2.32 7.03 -2.39 -0.02 2.31 16 41 H 0.06 2.82 1.15 -2.39 0.00 2.82 16 42 H 0.04 1.57 4.65 -2.39 -0.01 1.56 16 43 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 44 H 0.11 3.69 5.23 -2.39 -0.01 3.67 16 45 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 46 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.09 3.34 8.07 -2.38 -0.02 3.32 16 48 H 0.13 3.84 7.95 -2.91 -0.02 3.82 16 49 H 0.14 3.55 6.30 -2.91 -0.02 3.53 16 Total: -1.00 -72.74 362.03 1.56 -71.18 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.60 Total: 28.78 kcal Atomic # 6 Polarization: -58.27 SS G_CDS: 4.36 Total: -53.91 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -4.15 Total: -84.79 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.94 Total: -10.09 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.67 Total: 48.83 kcal Total: -72.74 1.56 -71.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602756266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.094 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds