Wall clock time and date at job start Tue Mar 31 2020 12:16:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35893 * 117.00048 * 2 1
4 4 C 1.38759 * 120.05702 * 0.25405 * 3 2 1
5 5 C 1.38114 * 119.94539 * 180.32123 * 4 3 2
6 6 C 1.38293 * 120.05621 * 359.67809 * 5 4 3
7 7 C 1.38237 * 120.11202 * 0.03062 * 6 5 4
8 8 C 1.50703 * 119.97552 * 179.97438 * 7 6 5
9 9 C 1.52990 * 109.47062 * 270.02105 * 8 7 6
10 10 H 1.09000 * 109.91256 * 55.34771 * 9 8 7
11 11 C 1.53998 * 109.91695 * 176.45208 * 9 8 7
12 12 C 1.54598 * 105.14005 * 120.57613 * 11 9 8
13 13 C 1.54944 * 102.92270 * 21.95619 * 12 11 9
14 14 N 1.47905 * 109.91887 * 294.03855 * 9 8 7
15 15 C 1.46900 * 110.99683 * 94.80343 * 14 9 8
16 16 C 1.53005 * 109.46914 * 176.36323 * 15 14 9
17 17 C 1.50693 * 115.55085 * 294.52728 * 16 15 14
18 18 H 1.08003 * 120.00071 * 144.50416 * 17 16 15
19 19 C 1.37879 * 120.00136 * 324.50291 * 17 16 15
20 20 N 1.31516 * 119.99790 * 349.80246 * 19 17 16
21 21 Si 1.86795 * 119.99993 * 169.79892 * 19 17 16
22 22 H 1.48500 * 109.47289 * 0.02562 * 21 19 17
23 23 H 1.48506 * 109.47056 * 120.00059 * 21 19 17
24 24 H 1.48499 * 109.47506 * 240.00072 * 21 19 17
25 25 C 1.52999 * 117.49799 * 148.85442 * 16 15 14
26 26 C 1.53005 * 117.49797 * 80.19887 * 16 15 14
27 27 C 1.38175 * 120.05563 * 0.02562 * 7 6 5
28 28 H 1.09003 * 109.46788 * 299.99736 * 1 2 3
29 29 H 1.08995 * 109.47644 * 59.99764 * 1 2 3
30 30 H 1.09009 * 109.46924 * 180.02562 * 1 2 3
31 31 H 1.08004 * 120.02463 * 0.02614 * 4 3 2
32 32 H 1.08006 * 119.97450 * 179.70728 * 5 4 3
33 33 H 1.08004 * 119.94489 * 179.97438 * 6 5 4
34 34 H 1.09003 * 109.46765 * 30.01958 * 8 7 6
35 35 H 1.09000 * 109.47035 * 150.01269 * 8 7 6
36 36 H 1.08998 * 110.30815 * 239.49389 * 11 9 8
37 37 H 1.08998 * 110.30876 * 1.56111 * 11 9 8
38 38 H 1.08996 * 110.72630 * 140.31810 * 12 11 9
39 39 H 1.09006 * 110.72260 * 263.59883 * 12 11 9
40 40 H 1.08997 * 110.66234 * 81.02323 * 13 12 11
41 41 H 1.09003 * 110.66608 * 204.15035 * 13 12 11
42 42 H 1.09003 * 109.47616 * 296.35984 * 15 14 9
43 43 H 1.08999 * 109.47196 * 56.36822 * 15 14 9
44 44 H 0.96997 * 119.99986 * 185.01917 * 20 19 17
45 45 H 1.09000 * 117.49910 * 0.02562 * 25 16 15
46 46 H 1.09004 * 117.50121 * 145.02102 * 25 16 15
47 47 H 1.09004 * 117.49534 * 214.98028 * 26 16 15
48 48 H 1.09006 * 117.49863 * 359.97280 * 26 16 15
49 49 H 1.07999 * 120.02730 * 179.97438 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 1.2914 2.3753 0.0053
5 6 1.9208 3.6047 -0.0014
6 6 3.3019 3.6757 -0.0067
7 6 4.0560 2.5171 -0.0059
8 6 5.5608 2.5981 -0.0123
9 6 6.0641 2.6213 -1.4568
10 1 5.5916 3.4387 -2.0016
11 6 7.5943 2.7934 -1.4765
12 6 8.1318 1.5436 -2.2109
13 6 6.9051 1.0685 -3.0295
14 7 5.7641 1.3316 -2.1157
15 6 4.4994 1.4021 -2.8596
16 6 4.2686 0.0829 -3.5995
17 6 5.2591 -0.2322 -4.6906
18 1 5.5624 -1.2538 -4.8660
19 6 5.7782 0.7837 -5.4649
20 7 5.2671 1.9932 -5.3916
21 14 7.2075 0.4420 -6.6180
22 1 7.5958 -0.9876 -6.5151
23 1 6.8008 0.7448 -8.0138
24 1 8.3620 1.2972 -6.2424
25 6 2.8210 -0.3661 -3.8083
26 6 3.7085 -1.0907 -2.7933
27 6 3.4311 1.2848 -0.0004
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0278 0.0005
31 1 0.2128 2.3203 0.0099
32 1 1.3339 4.5114 -0.0020
33 1 3.7922 4.6380 -0.0124
34 1 5.8778 3.5079 0.4976
35 1 5.9735 1.7306 0.5025
36 1 7.8663 3.6980 -2.0204
37 1 7.9837 2.8329 -0.4592
38 1 8.9569 1.8095 -2.8715
39 1 8.4387 0.7791 -1.4971
40 1 6.8059 1.6499 -3.9462
41 1 6.9810 0.0045 -3.2539
42 1 3.6782 1.5772 -2.1644
43 1 4.5464 2.2191 -3.5796
44 1 5.5828 2.6901 -5.9878
45 1 2.0330 0.2785 -3.4189
46 1 2.5851 -0.8898 -4.7347
47 1 4.0563 -2.0907 -3.0524
48 1 3.5048 -0.9231 -1.7356
49 1 4.0207 0.3799 -0.0002
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602769676.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:16:36
Heat of formation + Delta-G solvation = 17.382542 kcal
Electronic energy + Delta-G solvation = -28606.269196 eV
Core-core repulsion = 25113.247813 eV
Total energy + Delta-G solvation = -3493.021383 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 2.44 seconds
Orbital eigenvalues (eV)
-41.19450 -40.09783 -38.40239 -37.64716 -34.53148 -33.52434 -32.22973 -31.37116
-29.86932 -28.06906 -27.67172 -26.67301 -25.46524 -23.38622 -22.85638 -22.13101
-21.61415 -20.73608 -20.62584 -18.58390 -18.05634 -17.11469 -16.80633 -16.76508
-16.59289 -16.42366 -15.96399 -15.45455 -15.28903 -14.92720 -14.60040 -14.33731
-14.18493 -13.97238 -13.65787 -13.54481 -13.16678 -12.91888 -12.81703 -12.71368
-12.67025 -12.48980 -12.37753 -12.23476 -12.03962 -11.92302 -11.78457 -11.65997
-11.60160 -11.38910 -11.28551 -10.92497 -10.72648 -10.39299 -10.00839 -9.49629
-9.00394 -8.73639 -7.88837 -6.07291 0.51054 0.64011 1.35362 1.41476
1.49739 2.39713 2.49435 2.93155 3.02212 3.46452 3.79620 3.90376
3.99884 4.07336 4.14370 4.28881 4.31131 4.36942 4.41330 4.44412
4.49718 4.55774 4.65808 4.70003 4.73217 4.74619 4.78670 4.89013
4.93438 5.02532 5.03140 5.09856 5.15132 5.17068 5.22888 5.26639
5.27826 5.38209 5.48046 5.54717 5.58951 5.59896 5.62462 5.67252
5.74979 5.84189 6.01024 6.15012 6.52914 6.57077 6.60557 6.75200
6.89907 7.47111 8.93553
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013971 B = 0.005866 C = 0.004704
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2003.659203 B = 4772.409169 C = 5951.108509
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.338 6.338
3 C 0.110 3.890
4 C -0.223 4.223
5 C -0.087 4.087
6 C -0.168 4.168
7 C -0.040 4.040
8 C -0.057 4.057
9 C 0.069 3.931
10 H 0.024 0.976
11 C -0.114 4.114
12 C -0.131 4.131
13 C 0.037 3.963
14 N -0.496 5.496
15 C 0.087 3.913
16 C 0.042 3.958
17 C -0.492 4.492
18 H 0.042 0.958
19 C 0.051 3.949
20 N -0.897 5.897
21 Si 0.925 3.075
22 H -0.272 1.272
23 H -0.285 1.285
24 H -0.270 1.270
25 C -0.203 4.203
26 C -0.178 4.178
27 C -0.140 4.140
28 H 0.069 0.931
29 H 0.054 0.946
30 H 0.113 0.887
31 H 0.143 0.857
32 H 0.147 0.853
33 H 0.136 0.864
34 H 0.096 0.904
35 H 0.076 0.924
36 H 0.062 0.938
37 H 0.092 0.908
38 H 0.062 0.938
39 H 0.072 0.928
40 H 0.056 0.944
41 H 0.061 0.939
42 H 0.046 0.954
43 H 0.061 0.939
44 H 0.259 0.741
45 H 0.061 0.939
46 H 0.063 0.937
47 H 0.064 0.936
48 H 0.079 0.921
49 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.398 4.618 12.478 13.732
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.253 6.253
3 C 0.065 3.935
4 C -0.241 4.241
5 C -0.104 4.104
6 C -0.186 4.186
7 C -0.041 4.041
8 C -0.094 4.094
9 C -0.040 4.040
10 H 0.042 0.958
11 C -0.152 4.152
12 C -0.170 4.170
13 C -0.091 4.091
14 N -0.220 5.220
15 C -0.041 4.041
16 C 0.041 3.959
17 C -0.530 4.530
18 H 0.061 0.939
19 C -0.148 4.148
20 N -0.536 5.536
21 Si 0.751 3.249
22 H -0.196 1.196
23 H -0.211 1.211
24 H -0.195 1.195
25 C -0.242 4.242
26 C -0.216 4.216
27 C -0.159 4.159
28 H 0.088 0.912
29 H 0.072 0.928
30 H 0.131 0.869
31 H 0.160 0.840
32 H 0.165 0.835
33 H 0.154 0.846
34 H 0.114 0.886
35 H 0.095 0.905
36 H 0.081 0.919
37 H 0.110 0.890
38 H 0.080 0.920
39 H 0.090 0.910
40 H 0.074 0.926
41 H 0.079 0.921
42 H 0.064 0.936
43 H 0.079 0.921
44 H 0.069 0.931
45 H 0.079 0.921
46 H 0.082 0.918
47 H 0.082 0.918
48 H 0.097 0.903
49 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -3.321 4.201 12.814 13.887
hybrid contribution 0.109 0.196 -1.860 1.873
sum -3.212 4.397 10.954 12.233
Atomic orbital electron populations
1.23250 0.77010 1.05110 1.01848 1.86063 1.23074 1.27285 1.88829
1.19203 0.92482 0.84779 0.97035 1.21406 1.00690 0.92206 1.09807
1.21176 0.94644 0.97568 0.97061 1.21188 0.94248 0.98258 1.04891
1.19795 0.96511 0.91994 0.95754 1.20661 0.89896 1.03331 0.95544
1.22333 0.95535 0.91377 0.94773 0.95752 1.22367 0.93559 0.97592
1.01654 1.22627 0.97443 0.97905 0.98979 1.23562 0.89135 1.00995
0.95432 1.64625 1.02164 1.27668 1.27508 1.21863 0.90448 0.97687
0.94055 1.19032 0.90225 0.91767 0.94837 1.20685 1.23643 0.92619
1.16022 0.93931 1.25271 0.97786 0.94587 0.97111 1.69977 1.42987
1.02800 1.37844 0.86051 0.81207 0.78644 0.79031 1.19608 1.21137
1.19545 1.22802 0.96577 1.05589 0.99239 1.22664 1.06469 0.96957
0.95467 1.20289 0.91433 0.98454 1.05721 0.91211 0.92750 0.86855
0.83955 0.83524 0.84597 0.88588 0.90522 0.91950 0.88980 0.91951
0.90951 0.92616 0.92102 0.93622 0.92149 0.93124 0.92057 0.91794
0.91772 0.90269 0.87016
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.48 9.81 113.37 1.11 1.59 16
2 O -0.34 -10.86 10.50 -92.34 -0.97 -11.83 16
3 C 0.11 3.62 6.65 22.51 0.15 3.77 16
4 C -0.22 -6.20 9.04 22.37 0.20 -6.00 16
5 C -0.09 -2.26 10.04 22.25 0.22 -2.03 16
6 C -0.17 -4.71 9.70 22.28 0.22 -4.49 16
7 C -0.04 -1.28 3.98 -19.88 -0.08 -1.36 16
8 C -0.06 -1.65 4.81 29.85 0.14 -1.50 16
9 C 0.07 2.42 2.60 45.06 0.12 2.54 16
10 H 0.02 0.96 7.69 -2.39 -0.02 0.94 16
11 C -0.11 -3.43 6.57 31.48 0.21 -3.23 16
12 C -0.13 -4.52 7.06 31.80 0.22 -4.30 16
13 C 0.04 1.63 4.31 86.65 0.37 2.01 16
14 N -0.50 -20.96 4.70 -858.08 -4.03 -24.99 16
15 C 0.09 4.17 4.06 86.30 0.35 4.52 16
16 C 0.04 2.12 1.90 -52.93 -0.10 2.02 16
17 C -0.49 -26.64 6.50 25.60 0.17 -26.47 16
18 H 0.04 2.38 7.84 -2.91 -0.02 2.35 16
19 C 0.05 2.69 2.83 84.66 0.24 2.93 16
20 N -0.90 -48.50 9.58 21.45 0.21 -48.29 16
21 Si 0.92 42.07 28.97 68.60 1.99 44.05 16
22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
23 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16
24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16
25 C -0.20 -9.85 9.92 30.62 0.30 -9.54 16
26 C -0.18 -8.32 9.96 30.62 0.30 -8.02 16
27 C -0.14 -4.92 6.73 22.37 0.15 -4.77 16
28 H 0.07 1.21 7.65 -2.39 -0.02 1.19 16
29 H 0.05 1.16 7.67 -2.39 -0.02 1.14 16
30 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16
31 H 0.14 3.17 6.30 -2.91 -0.02 3.15 16
32 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16
33 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16
34 H 0.10 2.20 8.09 -2.39 -0.02 2.18 16
35 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16
36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
37 H 0.09 2.22 7.69 -2.39 -0.02 2.20 16
38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
39 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16
40 H 0.06 2.75 4.09 -2.39 -0.01 2.74 16
41 H 0.06 2.97 6.50 -2.39 -0.02 2.95 16
42 H 0.05 2.14 4.54 -2.39 -0.01 2.12 16
43 H 0.06 3.30 5.23 -2.39 -0.01 3.29 16
44 H 0.26 13.48 8.32 -92.71 -0.77 12.71 16
45 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16
46 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16
47 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16
48 H 0.08 3.60 7.28 -2.38 -0.02 3.58 16
49 H 0.11 4.33 7.48 -2.91 -0.02 4.30 16
Total: -1.00 -60.69 369.09 2.42 -58.27
By element:
Atomic # 1 Polarization: 34.18 SS G_CDS: 0.93 Total: 35.10 kcal
Atomic # 6 Polarization: -56.62 SS G_CDS: 4.31 Total: -52.32 kcal
Atomic # 7 Polarization: -69.45 SS G_CDS: -3.83 Total: -73.28 kcal
Atomic # 8 Polarization: -10.86 SS G_CDS: -0.97 Total: -11.83 kcal
Atomic # 14 Polarization: 42.07 SS G_CDS: 1.99 Total: 44.05 kcal
Total: -60.69 2.42 -58.27 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602769676.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.656 kcal
(2) G-P(sol) polarization free energy of solvation -60.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.963 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.383 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.44 seconds