Wall clock time and date at job start Tue Mar 31 2020 10:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00142 * 2 1 4 4 C 1.38748 * 120.05638 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94325 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05466 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.10993 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96843 * 180.02562 * 7 6 5 9 9 H 1.09003 * 110.59560 * 160.69496 * 8 7 6 10 10 C 1.54932 * 110.66954 * 283.70507 * 8 7 6 11 11 C 1.54600 * 102.92586 * 155.85137 * 10 8 7 12 12 H 1.08998 * 110.31129 * 96.95770 * 11 10 8 13 13 C 1.52993 * 110.30786 * 219.12679 * 11 10 8 14 14 C 1.54001 * 105.13486 * 338.04074 * 11 10 8 15 15 N 1.48062 * 107.14424 * 358.91779 * 14 11 10 16 16 C 1.46897 * 111.16290 * 145.63120 * 15 14 11 17 17 C 1.52996 * 109.47039 * 52.60599 * 16 15 14 18 18 C 1.50704 * 115.55121 * 34.41494 * 17 16 15 19 19 H 1.08000 * 119.99716 * 356.82245 * 18 17 16 20 20 C 1.37875 * 120.00118 * 176.82215 * 18 17 16 21 21 N 1.31509 * 120.00158 * 7.36158 * 20 18 17 22 22 Si 1.86807 * 119.99833 * 187.36559 * 20 18 17 23 23 H 1.48499 * 109.46912 * 94.98728 * 22 20 18 24 24 H 1.48497 * 109.46961 * 214.98170 * 22 20 18 25 25 H 1.48496 * 109.46958 * 334.98413 * 22 20 18 26 26 C 1.53000 * 117.50046 * 248.74759 * 17 16 15 27 27 C 1.52999 * 117.50066 * 180.08606 * 17 16 15 28 28 C 1.38166 * 120.05832 * 0.02562 * 7 6 5 29 29 H 1.09004 * 109.46626 * 300.00033 * 1 2 3 30 30 H 1.08996 * 109.47120 * 59.99194 * 1 2 3 31 31 H 1.08993 * 109.47492 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.02955 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.97068 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.93910 * 179.74384 * 6 5 4 35 35 H 1.09004 * 110.72255 * 274.20333 * 10 8 7 36 36 H 1.08992 * 110.72702 * 37.48726 * 10 8 7 37 37 H 1.09000 * 109.47506 * 59.99619 * 13 11 10 38 38 H 1.09000 * 109.46971 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47314 * 299.99401 * 13 11 10 40 40 H 1.08999 * 109.91311 * 118.12944 * 14 11 10 41 41 H 1.08998 * 109.91117 * 239.22357 * 14 11 10 42 42 H 1.08995 * 109.47162 * 172.60786 * 16 15 14 43 43 H 1.09003 * 109.47262 * 292.60570 * 16 15 14 44 44 H 0.97002 * 120.00558 * 180.02562 * 21 20 18 45 45 H 1.09004 * 117.49568 * 0.02562 * 26 17 16 46 46 H 1.08999 * 117.50033 * 145.02052 * 26 17 16 47 47 H 1.08996 * 117.50054 * 214.97668 * 27 17 16 48 48 H 1.09003 * 117.49948 * 359.97438 * 27 17 16 49 49 H 1.08007 * 120.02602 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0016 7 6 4.0560 2.5169 0.0011 8 6 5.5608 2.5979 0.0022 9 1 5.9953 1.6566 0.3390 10 6 6.0895 2.9716 -1.4053 11 6 7.4656 3.6068 -1.1005 12 1 8.2586 2.8693 -1.2245 13 6 7.7096 4.8092 -2.0146 14 6 7.3825 4.0605 0.3688 15 7 6.0246 3.7235 0.8535 16 6 6.0481 3.3369 2.2705 17 6 6.7592 4.4208 3.0830 18 6 6.5556 5.8338 2.6002 19 1 5.9830 6.0209 1.7038 20 6 7.1005 6.8877 3.3027 21 7 7.9159 6.6561 4.3081 22 14 6.6802 8.6444 2.8264 23 1 5.5546 9.1289 3.6652 24 1 7.8660 9.5124 3.0402 25 1 6.2860 8.6884 1.3954 26 6 8.1193 4.0708 3.6900 27 6 6.8893 4.2017 4.5917 28 6 3.4311 1.2847 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2129 2.3204 0.0005 33 1 1.3342 4.5113 0.0011 34 1 3.7924 4.6379 -0.0022 35 1 6.2042 2.0810 -2.0232 36 1 5.4295 3.6935 -1.8862 37 1 6.9302 5.5536 -1.8517 38 1 8.6821 5.2463 -1.7881 39 1 7.6903 4.4846 -3.0550 40 1 8.1277 3.5319 0.9632 41 1 7.5491 5.1356 0.4353 42 1 5.0265 3.2226 2.6328 43 1 6.5805 2.3922 2.3806 44 1 8.2990 7.3975 4.8027 45 1 8.5077 3.0683 3.5100 46 1 8.8667 4.8625 3.7404 47 1 6.8281 5.0795 5.2349 48 1 6.4679 3.2855 5.0054 49 1 4.0207 0.3797 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602803819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:16 Heat of formation + Delta-G solvation = 25.633369 kcal Electronic energy + Delta-G solvation = -27314.323939 eV Core-core repulsion = 23821.660338 eV Total energy + Delta-G solvation = -3492.663601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15618 -39.02492 -37.10396 -36.16039 -32.77047 -31.75293 -31.11420 -30.22201 -28.15457 -27.27461 -26.11992 -25.56670 -24.07722 -22.36022 -22.07657 -20.68464 -19.96135 -19.72187 -18.49713 -17.53443 -16.31165 -15.95651 -15.80029 -15.74663 -15.31332 -14.81826 -14.66150 -13.87274 -13.62449 -13.45862 -13.24143 -12.97722 -12.89640 -12.73464 -12.37757 -12.28012 -12.24237 -11.83705 -11.62380 -11.29372 -11.09723 -11.04083 -10.86104 -10.81259 -10.75703 -10.50506 -10.42263 -10.29616 -10.17437 -9.94509 -9.89402 -9.30888 -8.71337 -8.60076 -8.29310 -8.00030 -7.94499 -7.54966 -5.86986 -3.87391 1.49626 1.69350 3.26516 3.33764 3.41795 3.44971 3.95291 4.47393 4.60429 4.86130 4.90304 5.01747 5.06887 5.10735 5.11766 5.17908 5.26104 5.31373 5.41392 5.54630 5.69010 5.73321 5.75514 5.83791 5.88917 5.91143 6.01541 6.11783 6.19340 6.24459 6.32707 6.36472 6.41757 6.44467 6.50568 6.63802 6.68993 6.76182 6.78253 6.92549 6.96451 7.04341 7.11649 7.25035 7.37034 7.49253 7.68371 7.77288 7.95206 8.14763 8.27878 8.65913 9.12399 9.66084 11.10174 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.004157 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.779668 B = 6734.607236 C = 7220.807678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.088 4.088 6 C -0.115 4.115 7 C -0.022 4.022 8 C 0.094 3.906 9 H 0.053 0.947 10 C -0.105 4.105 11 C -0.108 4.108 12 H 0.065 0.935 13 C -0.138 4.138 14 C 0.055 3.945 15 N -0.484 5.484 16 C 0.096 3.904 17 C 0.022 3.978 18 C -0.451 4.451 19 H 0.076 0.924 20 C 0.053 3.947 21 N -0.884 5.884 22 Si 0.890 3.110 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.273 1.273 26 C -0.192 4.192 27 C -0.190 4.190 28 C -0.151 4.151 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.011 0.989 44 H 0.255 0.745 45 H 0.035 0.965 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.039 0.961 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 -9.444 -11.296 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.106 4.106 6 C -0.134 4.134 7 C -0.023 4.023 8 C -0.015 4.015 9 H 0.071 0.929 10 C -0.143 4.143 11 C -0.128 4.128 12 H 0.084 0.916 13 C -0.195 4.195 14 C -0.072 4.072 15 N -0.207 5.207 16 C -0.032 4.032 17 C 0.021 3.979 18 C -0.488 4.488 19 H 0.094 0.906 20 C -0.147 4.147 21 N -0.523 5.523 22 Si 0.719 3.281 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.230 4.230 27 C -0.228 4.228 28 C -0.170 4.170 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.118 0.882 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.057 0.943 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.374 -9.066 -11.195 17.187 hybrid contribution 0.085 0.243 0.285 0.384 sum -9.289 -8.823 -10.910 16.827 Atomic orbital electron populations 1.22980 0.78894 1.03454 1.01212 1.86036 1.20975 1.27367 1.89230 1.18876 0.92150 0.83881 0.97977 1.21139 0.99476 0.92594 1.10075 1.20979 0.94942 0.96655 0.97995 1.21092 0.92784 0.99429 1.00069 1.19485 0.94881 0.91880 0.96057 1.21694 0.90547 0.94645 0.94618 0.92928 1.22560 0.96428 1.00121 0.95172 1.22100 0.96569 0.97359 0.96733 0.91622 1.21782 1.01984 0.97719 0.98012 1.22894 0.89520 1.03544 0.91271 1.64634 1.22281 1.31392 1.02381 1.21757 0.99253 0.94946 0.87208 1.18998 0.94766 0.93724 0.90366 1.20680 1.30648 0.87976 1.09534 0.90614 1.25041 0.95215 0.98974 0.95477 1.70037 1.30500 1.30467 1.21313 0.86602 0.77686 0.84991 0.78857 1.21046 1.21701 1.19763 1.22961 0.94359 0.97855 1.07778 1.22753 1.03513 0.99729 0.96835 1.20223 0.91177 0.98108 1.07483 0.92804 0.92914 0.88633 0.86154 0.86061 0.84378 0.91830 0.90580 0.92038 0.92717 0.93521 0.94028 0.88225 0.92136 0.97081 0.93448 0.94701 0.87094 0.87517 0.94269 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.14 10.50 -19.42 -0.20 -4.34 16 3 C 0.12 1.62 6.69 -39.22 -0.26 1.36 16 4 C -0.21 -2.76 9.04 -39.43 -0.36 -3.12 16 5 C -0.09 -1.20 10.04 -39.60 -0.40 -1.59 16 6 C -0.12 -1.79 9.22 -39.56 -0.36 -2.15 16 7 C -0.02 -0.34 4.89 -104.65 -0.51 -0.86 16 8 C 0.09 1.47 2.48 -66.94 -0.17 1.30 16 9 H 0.05 0.83 7.76 -51.93 -0.40 0.43 16 10 C -0.10 -1.44 6.03 -24.87 -0.15 -1.59 16 11 C -0.11 -1.56 3.59 -89.26 -0.32 -1.88 16 12 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 13 C -0.14 -1.82 8.88 37.15 0.33 -1.49 16 14 C 0.06 1.01 4.99 -2.66 -0.01 0.99 16 15 N -0.48 -8.98 3.41 -223.85 -0.76 -9.75 16 16 C 0.10 2.02 4.99 -3.83 -0.02 2.00 16 17 C 0.02 0.54 1.60 -155.66 -0.25 0.29 16 18 C -0.45 -11.70 7.20 -34.44 -0.25 -11.95 16 19 H 0.08 1.97 6.87 -52.49 -0.36 1.61 16 20 C 0.05 1.41 5.24 -17.82 -0.09 1.32 16 21 N -0.88 -24.35 8.65 55.43 0.48 -23.87 16 22 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 C -0.19 -4.73 8.89 -26.69 -0.24 -4.97 16 27 C -0.19 -4.76 9.38 -26.69 -0.25 -5.01 16 28 C -0.15 -2.21 9.62 -39.43 -0.38 -2.59 16 29 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 30 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.14 2.30 7.69 -52.49 -0.40 1.89 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.05 7.66 -51.93 -0.40 0.65 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.82 7.20 -51.93 -0.37 0.44 16 41 H 0.10 2.06 6.29 -51.93 -0.33 1.74 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.01 0.23 7.65 -51.93 -0.40 -0.17 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 46 H 0.11 3.02 6.28 -51.93 -0.33 2.70 16 47 H 0.11 2.94 6.30 -51.93 -0.33 2.61 16 48 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.12 1.68 8.05 -52.48 -0.42 1.26 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -27.92 378.93 -10.72 -38.64 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.22 Total: 6.39 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.70 Total: -28.70 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.28 Total: -33.62 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.20 Total: -4.34 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.92 -10.72 -38.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.276 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds