Wall clock time and date at job start Tue Mar 31 2020 10:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00142 * 2 1 4 4 C 1.38748 * 120.05638 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94325 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05466 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.10993 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96843 * 180.02562 * 7 6 5 9 9 H 1.09003 * 110.59560 * 160.69496 * 8 7 6 10 10 C 1.54932 * 110.66954 * 283.70507 * 8 7 6 11 11 C 1.54600 * 102.92586 * 155.85137 * 10 8 7 12 12 H 1.08998 * 110.31129 * 96.95770 * 11 10 8 13 13 C 1.52993 * 110.30786 * 219.12679 * 11 10 8 14 14 C 1.54001 * 105.13486 * 338.04074 * 11 10 8 15 15 N 1.48062 * 107.14424 * 358.91779 * 14 11 10 16 16 C 1.46897 * 111.16290 * 145.63120 * 15 14 11 17 17 C 1.52996 * 109.47039 * 52.60599 * 16 15 14 18 18 C 1.50704 * 115.55121 * 34.41494 * 17 16 15 19 19 H 1.08000 * 119.99716 * 356.82245 * 18 17 16 20 20 C 1.37875 * 120.00118 * 176.82215 * 18 17 16 21 21 N 1.31509 * 120.00158 * 7.36158 * 20 18 17 22 22 Si 1.86807 * 119.99833 * 187.36559 * 20 18 17 23 23 H 1.48499 * 109.46912 * 94.98728 * 22 20 18 24 24 H 1.48497 * 109.46961 * 214.98170 * 22 20 18 25 25 H 1.48496 * 109.46958 * 334.98413 * 22 20 18 26 26 C 1.53000 * 117.50046 * 248.74759 * 17 16 15 27 27 C 1.52999 * 117.50066 * 180.08606 * 17 16 15 28 28 C 1.38166 * 120.05832 * 0.02562 * 7 6 5 29 29 H 1.09004 * 109.46626 * 300.00033 * 1 2 3 30 30 H 1.08996 * 109.47120 * 59.99194 * 1 2 3 31 31 H 1.08993 * 109.47492 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.02955 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.97068 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.93910 * 179.74384 * 6 5 4 35 35 H 1.09004 * 110.72255 * 274.20333 * 10 8 7 36 36 H 1.08992 * 110.72702 * 37.48726 * 10 8 7 37 37 H 1.09000 * 109.47506 * 59.99619 * 13 11 10 38 38 H 1.09000 * 109.46971 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47314 * 299.99401 * 13 11 10 40 40 H 1.08999 * 109.91311 * 118.12944 * 14 11 10 41 41 H 1.08998 * 109.91117 * 239.22357 * 14 11 10 42 42 H 1.08995 * 109.47162 * 172.60786 * 16 15 14 43 43 H 1.09003 * 109.47262 * 292.60570 * 16 15 14 44 44 H 0.97002 * 120.00558 * 180.02562 * 21 20 18 45 45 H 1.09004 * 117.49568 * 0.02562 * 26 17 16 46 46 H 1.08999 * 117.50033 * 145.02052 * 26 17 16 47 47 H 1.08996 * 117.50054 * 214.97668 * 27 17 16 48 48 H 1.09003 * 117.49948 * 359.97438 * 27 17 16 49 49 H 1.08007 * 120.02602 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0016 7 6 4.0560 2.5169 0.0011 8 6 5.5608 2.5979 0.0022 9 1 5.9953 1.6566 0.3390 10 6 6.0895 2.9716 -1.4053 11 6 7.4656 3.6068 -1.1005 12 1 8.2586 2.8693 -1.2245 13 6 7.7096 4.8092 -2.0146 14 6 7.3825 4.0605 0.3688 15 7 6.0246 3.7235 0.8535 16 6 6.0481 3.3369 2.2705 17 6 6.7592 4.4208 3.0830 18 6 6.5556 5.8338 2.6002 19 1 5.9830 6.0209 1.7038 20 6 7.1005 6.8877 3.3027 21 7 7.9159 6.6561 4.3081 22 14 6.6802 8.6444 2.8264 23 1 5.5546 9.1289 3.6652 24 1 7.8660 9.5124 3.0402 25 1 6.2860 8.6884 1.3954 26 6 8.1193 4.0708 3.6900 27 6 6.8893 4.2017 4.5917 28 6 3.4311 1.2847 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2129 2.3204 0.0005 33 1 1.3342 4.5113 0.0011 34 1 3.7924 4.6379 -0.0022 35 1 6.2042 2.0810 -2.0232 36 1 5.4295 3.6935 -1.8862 37 1 6.9302 5.5536 -1.8517 38 1 8.6821 5.2463 -1.7881 39 1 7.6903 4.4846 -3.0550 40 1 8.1277 3.5319 0.9632 41 1 7.5491 5.1356 0.4353 42 1 5.0265 3.2226 2.6328 43 1 6.5805 2.3922 2.3806 44 1 8.2990 7.3975 4.8027 45 1 8.5077 3.0683 3.5100 46 1 8.8667 4.8625 3.7404 47 1 6.8281 5.0795 5.2349 48 1 6.4679 3.2855 5.0054 49 1 4.0207 0.3797 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602803819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:16 Heat of formation + Delta-G solvation = 13.220495 kcal Electronic energy + Delta-G solvation = -27314.862202 eV Core-core repulsion = 23821.660338 eV Total energy + Delta-G solvation = -3493.201863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24729 -40.27998 -38.44113 -37.71308 -34.19766 -33.39617 -32.61402 -31.27729 -29.32886 -28.07363 -27.66618 -27.42352 -25.47250 -23.44511 -23.28859 -22.68085 -21.34765 -20.99041 -20.20573 -18.58704 -17.92579 -17.31645 -16.96006 -16.78011 -16.57694 -16.41549 -16.02609 -15.37250 -15.02160 -14.77111 -14.57851 -14.28664 -14.09252 -13.98658 -13.80752 -13.55977 -13.35941 -13.16573 -12.95107 -12.78713 -12.61389 -12.46880 -12.41790 -12.23139 -12.04309 -11.96512 -11.92707 -11.77218 -11.52819 -11.45974 -11.33382 -11.19917 -10.70077 -10.28509 -9.98205 -9.68112 -9.07125 -9.02573 -7.92493 -5.97521 0.42254 0.60473 1.43746 1.47055 1.56222 2.40139 2.49632 2.85258 3.09532 3.27396 3.71671 3.87386 3.95088 3.96382 4.04097 4.12003 4.26533 4.35487 4.39611 4.42992 4.43343 4.56465 4.59218 4.62538 4.65449 4.71893 4.75860 4.78504 4.84176 4.86618 4.87655 5.06044 5.08096 5.15210 5.16724 5.22035 5.27072 5.33041 5.40026 5.44544 5.46090 5.59432 5.63669 5.67898 5.83265 5.89883 6.01131 6.20184 6.27207 6.40033 6.53477 6.64885 7.05844 7.57884 9.03126 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.004157 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.779668 B = 6734.607236 C = 7220.807678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.031 4.031 8 C 0.095 3.905 9 H 0.054 0.946 10 C -0.095 4.095 11 C -0.101 4.101 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.059 3.941 15 N -0.492 5.492 16 C 0.109 3.891 17 C 0.020 3.980 18 C -0.454 4.454 19 H 0.071 0.929 20 C 0.008 3.992 21 N -0.907 5.907 22 Si 0.947 3.053 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.266 1.266 26 C -0.186 4.186 27 C -0.195 4.195 28 C -0.163 4.163 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.022 0.978 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.015 0.985 44 H 0.252 0.748 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 -10.558 -13.166 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.107 4.107 6 C -0.153 4.153 7 C -0.032 4.032 8 C -0.013 4.013 9 H 0.072 0.928 10 C -0.133 4.133 11 C -0.120 4.120 12 H 0.099 0.901 13 C -0.191 4.191 14 C -0.069 4.069 15 N -0.215 5.215 16 C -0.019 4.019 17 C 0.019 3.981 18 C -0.492 4.492 19 H 0.089 0.911 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.775 3.225 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.190 1.190 26 C -0.224 4.224 27 C -0.234 4.234 28 C -0.182 4.182 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.087 -10.188 -13.078 19.944 hybrid contribution 0.538 0.528 0.883 1.161 sum -10.549 -9.659 -12.195 18.796 Atomic orbital electron populations 1.23311 0.76612 1.05413 1.02152 1.86023 1.23356 1.26813 1.88961 1.19016 0.92160 0.84760 0.97300 1.21421 1.00899 0.91791 1.08823 1.21210 0.94351 0.97934 0.97185 1.21034 0.93827 0.98667 1.01819 1.19435 0.94511 0.92269 0.96944 1.21741 0.91093 0.93463 0.95026 0.92824 1.22541 0.95503 1.01045 0.94236 1.22061 0.97666 0.98222 0.94056 0.90059 1.21742 1.01331 0.96847 0.99184 1.22753 0.88873 1.01386 0.93880 1.64534 1.22447 1.33128 1.01403 1.21512 0.98179 0.93799 0.88446 1.19136 0.94547 0.94204 0.90177 1.20841 1.30101 0.89038 1.09217 0.91052 1.25681 0.95319 1.02277 0.95677 1.70186 1.31314 1.31030 1.22176 0.85697 0.77099 0.80980 0.78761 1.21129 1.21834 1.19003 1.22768 0.93804 0.97769 1.08022 1.22659 1.04208 0.99439 0.97076 1.20322 0.91977 0.97943 1.07970 0.92125 0.91597 0.86366 0.83391 0.84191 0.86242 0.89286 0.90647 0.93378 0.92965 0.90944 0.95936 0.91309 0.92864 0.96720 0.93836 0.93002 0.89816 0.90215 0.92426 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -7.87 10.50 -92.40 -0.97 -8.84 16 3 C 0.11 2.93 6.69 22.50 0.15 3.08 16 4 C -0.21 -4.93 9.04 22.37 0.20 -4.72 16 5 C -0.09 -2.28 10.04 22.26 0.22 -2.06 16 6 C -0.13 -4.10 9.22 22.28 0.21 -3.90 16 7 C -0.03 -0.93 4.89 -19.88 -0.10 -1.02 16 8 C 0.09 2.90 2.48 44.51 0.11 3.01 16 9 H 0.05 1.63 7.76 -2.39 -0.02 1.61 16 10 C -0.10 -2.44 6.03 31.80 0.19 -2.25 16 11 C -0.10 -2.78 3.59 -9.91 -0.04 -2.81 16 12 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 13 C -0.13 -3.34 8.88 71.98 0.64 -2.71 16 14 C 0.06 2.17 4.99 86.42 0.43 2.60 16 15 N -0.49 -18.36 3.41 -862.13 -2.94 -21.30 16 16 C 0.11 4.60 4.99 86.30 0.43 5.03 16 17 C 0.02 0.99 1.60 -52.93 -0.08 0.90 16 18 C -0.45 -24.10 7.20 25.60 0.18 -23.92 16 19 H 0.07 3.79 6.87 -2.91 -0.02 3.77 16 20 C 0.01 0.44 5.24 84.65 0.44 0.88 16 21 N -0.91 -51.42 8.65 21.45 0.19 -51.24 16 22 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C -0.19 -9.35 8.89 30.62 0.27 -9.08 16 27 C -0.20 -9.96 9.38 30.62 0.29 -9.68 16 28 C -0.16 -4.57 9.62 22.37 0.22 -4.36 16 29 H 0.06 0.77 7.66 -2.38 -0.02 0.75 16 30 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 31 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.15 2.55 6.30 -2.91 -0.02 2.53 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.12 4.03 7.69 -2.91 -0.02 4.01 16 35 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.07 1.96 7.66 -2.39 -0.02 1.94 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 41 H 0.07 2.94 6.29 -2.39 -0.02 2.93 16 42 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.01 0.60 7.65 -2.39 -0.02 0.59 16 44 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.05 2.39 8.05 -2.39 -0.02 2.37 16 46 H 0.08 4.72 6.28 -2.39 -0.01 4.70 16 47 H 0.08 4.53 6.30 -2.39 -0.02 4.51 16 48 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.13 3.35 8.05 -2.91 -0.02 3.33 16 Total: -1.00 -61.07 378.93 4.10 -56.96 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.91 Total: 28.26 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 4.88 Total: -49.62 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -2.75 Total: -72.54 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.97 Total: -8.84 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -61.07 4.10 -56.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.185 kcal (2) G-P(sol) polarization free energy of solvation -61.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds