Wall clock time and date at job start Tue Mar 31 2020 10:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35896 * 117.00481 * 2 1 4 4 C 1.38754 * 120.05213 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94320 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05391 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11621 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.97547 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.46012 * 162.41030 * 8 7 6 10 10 C 1.54379 * 110.41234 * 284.82196 * 8 7 6 11 11 C 1.54255 * 105.06053 * 142.63192 * 10 8 7 12 12 H 1.09005 * 110.32449 * 241.10867 * 11 10 8 13 13 C 1.52996 * 110.41283 * 118.94154 * 11 10 8 14 14 C 1.54385 * 105.06239 * 359.97438 * 11 10 8 15 15 N 1.48560 * 110.41156 * 39.99763 * 8 7 6 16 16 C 1.46899 * 111.00203 * 82.18225 * 15 8 7 17 17 C 1.52997 * 109.47254 * 185.29253 * 16 15 8 18 18 C 1.50704 * 115.54849 * 34.32885 * 17 16 15 19 19 H 1.07999 * 120.00060 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99951 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00157 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99968 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47154 * 89.99946 * 22 20 18 24 24 H 1.48500 * 109.47380 * 209.99908 * 22 20 18 25 25 H 1.48501 * 109.47332 * 330.00032 * 22 20 18 26 26 C 1.53001 * 117.50064 * 248.62206 * 17 16 15 27 27 C 1.52994 * 117.50137 * 180.02562 * 17 16 15 28 28 C 1.38170 * 120.05423 * 0.22427 * 7 6 5 29 29 H 1.08996 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47665 * 300.00704 * 1 2 3 31 31 H 1.09007 * 109.46462 * 60.00296 * 1 2 3 32 32 H 1.08000 * 120.03350 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.96936 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.94356 * 179.97438 * 6 5 4 35 35 H 1.08996 * 110.31964 * 23.73685 * 10 8 7 36 36 H 1.09000 * 110.32273 * 261.52970 * 10 8 7 37 37 H 1.08995 * 109.47314 * 302.85896 * 13 11 10 38 38 H 1.08999 * 109.47215 * 62.85715 * 13 11 10 39 39 H 1.08999 * 109.47771 * 182.85772 * 13 11 10 40 40 H 1.09001 * 110.41236 * 217.37095 * 14 11 10 41 41 H 1.08999 * 110.40540 * 94.92851 * 14 11 10 42 42 H 1.09002 * 109.47043 * 305.29324 * 16 15 8 43 43 H 1.09001 * 109.47354 * 65.29385 * 16 15 8 44 44 H 0.96996 * 119.99674 * 180.02562 * 21 20 18 45 45 H 1.08997 * 117.49845 * 359.97438 * 26 17 16 46 46 H 1.08999 * 117.50024 * 145.02000 * 26 17 16 47 47 H 1.09008 * 117.50231 * 214.98172 * 27 17 16 48 48 H 1.09001 * 117.49790 * 359.97417 * 27 17 16 49 49 H 1.07997 * 120.03440 * 179.74704 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0561 2.5170 -0.0021 8 6 5.5609 2.5980 -0.0033 9 1 5.9939 1.6464 0.3050 10 6 6.0775 2.9964 -1.4024 11 6 7.2788 3.9268 -1.1361 12 1 7.0934 4.9147 -1.5580 13 6 8.5576 3.3293 -1.7263 14 6 7.3865 4.0128 0.4016 15 7 6.0216 3.6909 0.8912 16 6 6.0554 3.2467 2.2910 17 6 6.4057 4.4312 3.1937 18 6 5.8729 5.7684 2.7474 19 1 5.2869 5.8417 1.8432 20 6 6.1345 6.8984 3.4929 21 7 6.8485 6.8092 4.5938 22 14 5.4746 8.5559 2.9393 23 1 4.1314 8.7773 3.5328 24 1 6.3967 9.6304 3.3870 25 1 5.3710 8.5779 1.4581 26 6 7.7676 4.4098 3.8907 27 6 6.4913 4.1712 4.6990 28 6 3.4312 1.2847 -0.0068 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 0.2129 2.3204 -0.0014 33 1 1.3341 4.5113 -0.0011 34 1 3.7924 4.6379 -0.0024 35 1 5.3025 3.5275 -1.9550 36 1 6.3982 2.1124 -1.9535 37 1 8.7237 2.3380 -1.3048 38 1 8.4564 3.2515 -2.8088 39 1 9.4040 3.9727 -1.4860 40 1 7.6729 5.0192 0.7069 41 1 8.1052 3.2826 0.7736 42 1 5.0782 2.8530 2.5709 43 1 6.8080 2.4667 2.4066 44 1 7.0322 7.6042 5.1184 45 1 8.4138 3.5516 3.7064 46 1 8.2786 5.3630 4.0264 47 1 6.1622 4.9674 5.3669 48 1 6.2976 3.1563 5.0463 49 1 4.0206 0.3797 -0.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602803821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:19 Heat of formation + Delta-G solvation = 25.664045 kcal Electronic energy + Delta-G solvation = -27315.767858 eV Core-core repulsion = 23823.105587 eV Total energy + Delta-G solvation = -3492.662271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.13980 -39.01698 -37.03451 -36.20403 -32.82092 -31.73986 -31.10123 -30.20121 -28.09286 -27.25761 -26.32306 -25.49377 -24.07591 -22.33815 -22.02952 -20.63806 -20.01561 -19.54862 -18.77360 -17.57273 -16.19239 -15.87438 -15.73217 -15.70101 -15.38680 -14.85603 -14.52319 -14.10977 -13.58741 -13.41562 -13.27264 -13.08392 -12.96215 -12.86937 -12.38897 -12.26806 -12.09982 -11.82714 -11.58770 -11.42784 -11.04634 -11.00289 -10.90951 -10.80357 -10.74713 -10.49355 -10.39416 -10.36058 -10.15461 -10.02346 -9.88182 -9.34350 -8.69295 -8.57315 -8.23585 -7.95220 -7.90883 -7.66293 -5.82090 -3.83279 1.53315 1.73654 3.29576 3.35851 3.43141 3.46741 3.99015 4.50289 4.57777 4.86975 4.90297 5.03776 5.05356 5.09179 5.14113 5.19333 5.28658 5.33871 5.40887 5.48189 5.61913 5.71652 5.76031 5.80738 5.86150 5.93218 5.98727 6.10233 6.11395 6.18538 6.24059 6.29639 6.37346 6.40825 6.49511 6.60764 6.63353 6.76194 6.81791 6.82427 6.97493 7.00190 7.13206 7.27729 7.37541 7.52490 7.62463 7.73876 7.95385 8.19287 8.31396 8.71089 9.17672 9.70557 11.14894 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004610 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.899675 B = 6072.071243 C = 7015.013956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.213 4.213 5 C -0.087 4.087 6 C -0.112 4.112 7 C -0.024 4.024 8 C 0.092 3.908 9 H 0.051 0.949 10 C -0.107 4.107 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.141 4.141 14 C 0.050 3.950 15 N -0.472 5.472 16 C 0.094 3.906 17 C 0.026 3.974 18 C -0.443 4.443 19 H 0.075 0.925 20 C 0.050 3.950 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.274 1.274 26 C -0.192 4.192 27 C -0.191 4.191 28 C -0.151 4.151 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.012 0.988 44 H 0.254 0.746 45 H 0.035 0.965 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.037 0.963 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 -10.141 -12.029 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.105 4.105 6 C -0.130 4.130 7 C -0.025 4.025 8 C -0.017 4.017 9 H 0.069 0.931 10 C -0.145 4.145 11 C -0.119 4.119 12 H 0.096 0.904 13 C -0.199 4.199 14 C -0.078 4.078 15 N -0.195 5.195 16 C -0.034 4.034 17 C 0.025 3.975 18 C -0.481 4.481 19 H 0.093 0.907 20 C -0.149 4.149 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.199 1.199 26 C -0.230 4.230 27 C -0.229 4.229 28 C -0.170 4.170 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.055 0.945 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.682 -9.736 -11.898 16.763 hybrid contribution -0.063 0.238 0.197 0.315 sum -6.745 -9.498 -11.701 16.511 Atomic orbital electron populations 1.22978 0.78913 1.03422 1.01224 1.86030 1.20962 1.27390 1.89261 1.18869 0.92142 0.83862 0.98070 1.21141 0.99468 0.92593 1.09994 1.20978 0.94961 0.96665 0.97893 1.21085 0.92812 0.99403 0.99736 1.19476 0.94809 0.91901 0.96275 1.21560 0.90711 0.94962 0.94418 0.93111 1.22386 0.97647 0.99011 0.95426 1.21941 0.94132 0.99285 0.96570 0.90373 1.21840 0.97450 1.00590 1.00033 1.23075 0.89928 1.02694 0.92074 1.65261 1.20603 1.31877 1.01765 1.21755 0.98648 0.95551 0.87433 1.18936 0.96270 0.93361 0.88900 1.20646 1.30229 0.89119 1.08061 0.90728 1.25051 0.95669 0.98985 0.95228 1.70032 1.39335 1.28166 1.15223 0.86599 0.78513 0.83932 0.78951 1.21071 1.21711 1.19860 1.22860 0.91506 1.00204 1.08387 1.22795 1.03857 0.97820 0.98438 1.20215 0.91182 0.98045 1.07571 0.88659 0.92792 0.92927 0.86164 0.86045 0.84380 0.91085 0.91726 0.93026 0.93014 0.92565 0.88644 0.94762 0.92209 0.96949 0.93527 0.94668 0.87355 0.87220 0.94464 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.25 10.50 -19.41 -0.20 -4.45 16 3 C 0.12 1.66 6.69 -39.21 -0.26 1.39 16 4 C -0.21 -2.87 9.04 -39.43 -0.36 -3.22 16 5 C -0.09 -1.24 10.04 -39.60 -0.40 -1.64 16 6 C -0.11 -1.80 9.15 -39.56 -0.36 -2.16 16 7 C -0.02 -0.38 4.57 -104.65 -0.48 -0.85 16 8 C 0.09 1.44 2.46 -67.23 -0.17 1.28 16 9 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 10 C -0.11 -1.44 6.17 -25.35 -0.16 -1.59 16 11 C -0.10 -1.40 3.65 -89.24 -0.33 -1.73 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.14 -1.65 8.91 37.16 0.33 -1.32 16 14 C 0.05 0.87 5.41 -2.19 -0.01 0.86 16 15 N -0.47 -8.76 3.22 -223.53 -0.72 -9.48 16 16 C 0.09 1.97 4.88 -3.83 -0.02 1.95 16 17 C 0.03 0.64 1.98 -155.66 -0.31 0.33 16 18 C -0.44 -11.66 8.28 -34.44 -0.29 -11.94 16 19 H 0.07 1.97 7.22 -52.49 -0.38 1.59 16 20 C 0.05 1.35 5.28 -17.82 -0.09 1.25 16 21 N -0.89 -24.72 8.59 55.43 0.48 -24.25 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 C -0.19 -4.76 9.30 -26.76 -0.25 -5.01 16 27 C -0.19 -4.81 9.38 -26.76 -0.25 -5.06 16 28 C -0.15 -2.26 9.62 -39.43 -0.38 -2.64 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.05 0.41 7.66 -51.92 -0.40 0.01 16 32 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 33 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.14 2.40 7.75 -52.49 -0.41 2.00 16 35 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 36 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.92 7.82 -51.93 -0.41 1.51 16 41 H 0.03 0.60 7.54 -51.93 -0.39 0.21 16 42 H 0.06 1.29 7.86 -51.93 -0.41 0.88 16 43 H 0.01 0.25 7.64 -51.93 -0.40 -0.14 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 46 H 0.11 2.97 6.28 -51.93 -0.33 2.64 16 47 H 0.11 3.05 6.29 -51.92 -0.33 2.73 16 48 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.12 1.70 8.04 -52.49 -0.42 1.27 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -28.42 382.42 -10.80 -39.21 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.31 Total: 5.92 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -2.78 Total: -28.87 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: -0.24 Total: -33.72 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.20 Total: -4.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.42 -10.80 -39.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.877 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds