Wall clock time and date at job start Tue Mar 31 2020 10:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35896 * 117.00481 * 2 1 4 4 C 1.38754 * 120.05213 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94320 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05391 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11621 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.97547 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.46012 * 162.41030 * 8 7 6 10 10 C 1.54379 * 110.41234 * 284.82196 * 8 7 6 11 11 C 1.54255 * 105.06053 * 142.63192 * 10 8 7 12 12 H 1.09005 * 110.32449 * 241.10867 * 11 10 8 13 13 C 1.52996 * 110.41283 * 118.94154 * 11 10 8 14 14 C 1.54385 * 105.06239 * 359.97438 * 11 10 8 15 15 N 1.48560 * 110.41156 * 39.99763 * 8 7 6 16 16 C 1.46899 * 111.00203 * 82.18225 * 15 8 7 17 17 C 1.52997 * 109.47254 * 185.29253 * 16 15 8 18 18 C 1.50704 * 115.54849 * 34.32885 * 17 16 15 19 19 H 1.07999 * 120.00060 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99951 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00157 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99968 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47154 * 89.99946 * 22 20 18 24 24 H 1.48500 * 109.47380 * 209.99908 * 22 20 18 25 25 H 1.48501 * 109.47332 * 330.00032 * 22 20 18 26 26 C 1.53001 * 117.50064 * 248.62206 * 17 16 15 27 27 C 1.52994 * 117.50137 * 180.02562 * 17 16 15 28 28 C 1.38170 * 120.05423 * 0.22427 * 7 6 5 29 29 H 1.08996 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47665 * 300.00704 * 1 2 3 31 31 H 1.09007 * 109.46462 * 60.00296 * 1 2 3 32 32 H 1.08000 * 120.03350 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.96936 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.94356 * 179.97438 * 6 5 4 35 35 H 1.08996 * 110.31964 * 23.73685 * 10 8 7 36 36 H 1.09000 * 110.32273 * 261.52970 * 10 8 7 37 37 H 1.08995 * 109.47314 * 302.85896 * 13 11 10 38 38 H 1.08999 * 109.47215 * 62.85715 * 13 11 10 39 39 H 1.08999 * 109.47771 * 182.85772 * 13 11 10 40 40 H 1.09001 * 110.41236 * 217.37095 * 14 11 10 41 41 H 1.08999 * 110.40540 * 94.92851 * 14 11 10 42 42 H 1.09002 * 109.47043 * 305.29324 * 16 15 8 43 43 H 1.09001 * 109.47354 * 65.29385 * 16 15 8 44 44 H 0.96996 * 119.99674 * 180.02562 * 21 20 18 45 45 H 1.08997 * 117.49845 * 359.97438 * 26 17 16 46 46 H 1.08999 * 117.50024 * 145.02000 * 26 17 16 47 47 H 1.09008 * 117.50231 * 214.98172 * 27 17 16 48 48 H 1.09001 * 117.49790 * 359.97417 * 27 17 16 49 49 H 1.07997 * 120.03440 * 179.74704 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0561 2.5170 -0.0021 8 6 5.5609 2.5980 -0.0033 9 1 5.9939 1.6464 0.3050 10 6 6.0775 2.9964 -1.4024 11 6 7.2788 3.9268 -1.1361 12 1 7.0934 4.9147 -1.5580 13 6 8.5576 3.3293 -1.7263 14 6 7.3865 4.0128 0.4016 15 7 6.0216 3.6909 0.8912 16 6 6.0554 3.2467 2.2910 17 6 6.4057 4.4312 3.1937 18 6 5.8729 5.7684 2.7474 19 1 5.2869 5.8417 1.8432 20 6 6.1345 6.8984 3.4929 21 7 6.8485 6.8092 4.5938 22 14 5.4746 8.5559 2.9393 23 1 4.1314 8.7773 3.5328 24 1 6.3967 9.6304 3.3870 25 1 5.3710 8.5779 1.4581 26 6 7.7676 4.4098 3.8907 27 6 6.4913 4.1712 4.6990 28 6 3.4312 1.2847 -0.0068 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 0.2129 2.3204 -0.0014 33 1 1.3341 4.5113 -0.0011 34 1 3.7924 4.6379 -0.0024 35 1 5.3025 3.5275 -1.9550 36 1 6.3982 2.1124 -1.9535 37 1 8.7237 2.3380 -1.3048 38 1 8.4564 3.2515 -2.8088 39 1 9.4040 3.9727 -1.4860 40 1 7.6729 5.0192 0.7069 41 1 8.1052 3.2826 0.7736 42 1 5.0782 2.8530 2.5709 43 1 6.8080 2.4667 2.4066 44 1 7.0322 7.6042 5.1184 45 1 8.4138 3.5516 3.7064 46 1 8.2786 5.3630 4.0264 47 1 6.1622 4.9674 5.3669 48 1 6.2976 3.1563 5.0463 49 1 4.0206 0.3797 -0.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602803821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:19 Heat of formation + Delta-G solvation = 13.079097 kcal Electronic energy + Delta-G solvation = -27316.313582 eV Core-core repulsion = 23823.105587 eV Total energy + Delta-G solvation = -3493.207995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25384 -40.24459 -38.40837 -37.76987 -34.20405 -33.39429 -32.62150 -31.28188 -29.24786 -28.10961 -27.83170 -27.31595 -25.45360 -23.45320 -23.26400 -22.65056 -21.24897 -20.87612 -20.52687 -18.65518 -17.87714 -17.16359 -16.97103 -16.73507 -16.58803 -16.50455 -15.90221 -15.51602 -15.05794 -14.89344 -14.60446 -14.34320 -14.10215 -14.00495 -13.84582 -13.40974 -13.19173 -13.08628 -12.92633 -12.82477 -12.65738 -12.59454 -12.40285 -12.20946 -12.09515 -11.99020 -11.91651 -11.78824 -11.56513 -11.46584 -11.30378 -11.23271 -10.69470 -10.24154 -9.95725 -9.68842 -9.13277 -9.03320 -7.89698 -5.95892 0.42196 0.60607 1.44163 1.46516 1.56039 2.39967 2.50751 2.85087 3.10506 3.27457 3.71317 3.84260 3.94717 3.97048 4.06837 4.12586 4.27694 4.31685 4.39482 4.42627 4.45885 4.53986 4.57033 4.61914 4.66699 4.70959 4.75570 4.77207 4.82943 4.86356 4.90541 4.94495 5.07385 5.14158 5.15788 5.17734 5.28597 5.30730 5.39836 5.41361 5.45540 5.54569 5.62876 5.69122 5.82515 5.89295 6.03747 6.21523 6.23650 6.37317 6.53138 6.68164 7.08750 7.60108 9.05441 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004610 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.899675 B = 6072.071243 C = 7015.013956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.091 4.091 6 C -0.133 4.133 7 C -0.032 4.032 8 C 0.094 3.906 9 H 0.055 0.945 10 C -0.098 4.098 11 C -0.093 4.093 12 H 0.074 0.926 13 C -0.136 4.136 14 C 0.052 3.948 15 N -0.486 5.486 16 C 0.107 3.893 17 C 0.022 3.978 18 C -0.449 4.449 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.910 5.910 22 Si 0.949 3.051 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.267 1.267 26 C -0.186 4.186 27 C -0.196 4.196 28 C -0.162 4.162 29 H 0.119 0.881 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.251 0.749 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.056 0.944 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 -11.481 -13.921 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.109 4.109 6 C -0.152 4.152 7 C -0.033 4.033 8 C -0.014 4.014 9 H 0.073 0.927 10 C -0.136 4.136 11 C -0.112 4.112 12 H 0.092 0.908 13 C -0.193 4.193 14 C -0.076 4.076 15 N -0.209 5.209 16 C -0.021 4.021 17 C 0.022 3.978 18 C -0.487 4.487 19 H 0.088 0.912 20 C -0.192 4.192 21 N -0.551 5.551 22 Si 0.776 3.224 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.192 1.192 26 C -0.224 4.224 27 C -0.235 4.235 28 C -0.182 4.182 29 H 0.137 0.863 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.074 0.926 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.935 -11.084 -13.803 19.400 hybrid contribution 0.244 0.605 0.806 1.037 sum -7.691 -10.480 -12.997 18.382 Atomic orbital electron populations 1.23311 0.76636 1.05425 1.02119 1.86019 1.23335 1.26766 1.88971 1.19014 0.92197 0.84708 0.97317 1.21411 1.00881 0.91795 1.08855 1.21197 0.94428 0.97921 0.97310 1.21014 0.93823 0.98674 1.01669 1.19473 0.94710 0.92178 0.96895 1.21604 0.90971 0.94025 0.94805 0.92721 1.22364 0.97182 0.99754 0.94286 1.21886 0.95806 0.99664 0.93849 0.90767 1.21798 0.95859 1.00463 1.01203 1.22988 0.89377 1.00554 0.94711 1.65150 1.21298 1.33513 1.00910 1.21494 0.98141 0.93967 0.88514 1.19090 0.95611 0.94143 0.88985 1.20830 1.29903 0.90196 1.07724 0.91201 1.25700 0.96131 1.01981 0.95419 1.70188 1.40311 1.28553 1.16030 0.85691 0.77675 0.80268 0.78758 1.20982 1.21856 1.19180 1.22677 0.91578 0.99502 1.08600 1.22685 1.04326 0.97836 0.98610 1.20336 0.91940 0.97946 1.07934 0.86293 0.92221 0.91599 0.83440 0.84438 0.86461 0.91063 0.89319 0.92613 0.90881 0.92676 0.92084 0.94858 0.92990 0.96381 0.93936 0.92774 0.90134 0.90040 0.92569 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.09 10.50 -92.38 -0.97 -9.06 16 3 C 0.11 3.03 6.69 22.51 0.15 3.18 16 4 C -0.21 -5.21 9.04 22.37 0.20 -5.01 16 5 C -0.09 -2.48 10.04 22.25 0.22 -2.26 16 6 C -0.13 -4.26 9.15 22.28 0.20 -4.05 16 7 C -0.03 -0.98 4.57 -19.88 -0.09 -1.07 16 8 C 0.09 2.86 2.46 44.31 0.11 2.97 16 9 H 0.05 1.62 7.88 -2.39 -0.02 1.60 16 10 C -0.10 -2.47 6.17 31.49 0.19 -2.28 16 11 C -0.09 -2.49 3.65 -9.90 -0.04 -2.53 16 12 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 13 C -0.14 -2.86 8.91 71.98 0.64 -2.22 16 14 C 0.05 1.81 5.41 86.46 0.47 2.27 16 15 N -0.49 -18.07 3.22 -861.10 -2.77 -20.84 16 16 C 0.11 4.50 4.88 86.30 0.42 4.93 16 17 C 0.02 1.11 1.98 -52.93 -0.10 1.01 16 18 C -0.45 -24.14 8.28 25.60 0.21 -23.93 16 19 H 0.07 3.77 7.22 -2.91 -0.02 3.75 16 20 C 0.00 0.26 5.28 84.65 0.45 0.71 16 21 N -0.91 -52.14 8.59 21.45 0.18 -51.95 16 22 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C -0.19 -9.38 9.30 30.58 0.28 -9.09 16 27 C -0.20 -10.06 9.38 30.57 0.29 -9.78 16 28 C -0.16 -4.66 9.62 22.37 0.22 -4.44 16 29 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 0.81 7.66 -2.39 -0.02 0.80 16 31 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 32 H 0.15 2.74 6.30 -2.91 -0.02 2.72 16 33 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.12 4.18 7.75 -2.91 -0.02 4.16 16 35 H 0.07 1.81 7.71 -2.39 -0.02 1.79 16 36 H 0.09 1.83 7.71 -2.39 -0.02 1.81 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.06 2.54 7.82 -2.39 -0.02 2.52 16 41 H 0.03 1.15 7.54 -2.39 -0.02 1.14 16 42 H 0.05 2.24 7.86 -2.39 -0.02 2.23 16 43 H 0.02 0.73 7.64 -2.39 -0.02 0.71 16 44 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.05 2.49 8.05 -2.39 -0.02 2.47 16 46 H 0.08 4.56 6.28 -2.39 -0.02 4.54 16 47 H 0.08 4.67 6.29 -2.38 -0.01 4.66 16 48 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.13 3.42 8.04 -2.91 -0.02 3.40 16 Total: -1.00 -62.04 382.42 4.32 -57.72 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.91 Total: 28.07 kcal Atomic # 6 Polarization: -55.14 SS G_CDS: 4.94 Total: -50.20 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -2.59 Total: -72.79 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.97 Total: -9.06 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -62.04 4.32 -57.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.802 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds