Wall clock time and date at job start Tue Mar 31 2020 10:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99724 * 2 1 4 4 C 1.38754 * 120.05849 * 359.97405 * 3 2 1 5 5 C 1.38115 * 119.94773 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05470 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11335 * 359.95304 * 6 5 4 8 8 C 1.50694 * 119.97371 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.87959 * 167.87202 * 8 7 6 10 10 C 1.54312 * 109.89071 * 46.67091 * 8 7 6 11 11 C 1.55144 * 103.02113 * 218.30844 * 10 8 7 12 12 H 1.08994 * 110.99017 * 277.56066 * 11 10 8 13 13 C 1.53001 * 111.02303 * 153.75815 * 11 10 8 14 14 C 1.54901 * 101.65118 * 35.65370 * 11 10 8 15 15 N 1.47448 * 109.89127 * 288.89851 * 8 7 6 16 16 C 1.46901 * 110.99531 * 356.14871 * 15 8 7 17 17 C 1.53002 * 109.46870 * 177.30959 * 16 15 8 18 18 C 1.50698 * 115.54846 * 34.41934 * 17 16 15 19 19 H 1.07998 * 120.00355 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99844 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00194 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46762 * 60.00197 * 22 20 18 24 24 H 1.48504 * 109.47623 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47424 * 300.00722 * 22 20 18 26 26 C 1.52996 * 117.49941 * 248.74869 * 17 16 15 27 27 C 1.53001 * 117.49728 * 180.08737 * 17 16 15 28 28 C 1.38168 * 120.05380 * 0.05013 * 7 6 5 29 29 H 1.09006 * 109.47236 * 60.00528 * 1 2 3 30 30 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47533 * 300.00149 * 1 2 3 32 32 H 1.08007 * 120.02547 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.97615 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.94406 * 179.97438 * 6 5 4 35 35 H 1.09004 * 110.70632 * 336.69595 * 10 8 7 36 36 H 1.09006 * 110.70591 * 99.92931 * 10 8 7 37 37 H 1.09001 * 109.47179 * 306.26044 * 13 11 10 38 38 H 1.08993 * 109.47088 * 66.25919 * 13 11 10 39 39 H 1.09001 * 109.47026 * 186.26458 * 13 11 10 40 40 H 1.08997 * 110.37587 * 204.09961 * 14 11 10 41 41 H 1.09000 * 110.46857 * 81.80271 * 14 11 10 42 42 H 1.08994 * 109.47423 * 297.30910 * 16 15 8 43 43 H 1.09003 * 109.46989 * 57.31117 * 16 15 8 44 44 H 0.97002 * 120.00130 * 179.97438 * 21 20 18 45 45 H 1.09006 * 117.49802 * 0.02562 * 26 17 16 46 46 H 1.09005 * 117.50044 * 145.01965 * 26 17 16 47 47 H 1.08999 * 117.49903 * 214.97611 * 27 17 16 48 48 H 1.09001 * 117.49996 * 359.97438 * 27 17 16 49 49 H 1.08004 * 120.03025 * 180.25619 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5173 -0.0006 8 6 5.5606 2.5984 -0.0006 9 1 5.9847 1.6178 0.2156 10 6 6.0312 3.6218 1.0541 11 6 7.2298 4.3170 0.3562 12 1 8.1395 3.7259 0.4617 13 6 7.4341 5.7333 0.8977 14 6 6.7571 4.3496 -1.1186 15 7 6.0375 3.0728 -1.3128 16 6 4.9194 3.2360 -2.2515 17 6 5.4435 3.7918 -3.5771 18 6 6.8182 3.3239 -3.9799 19 1 7.3637 2.6411 -3.3455 20 6 7.3796 3.7675 -5.1586 21 7 6.7155 4.5994 -5.9310 22 14 9.0838 3.1880 -5.6576 23 1 9.0834 1.7093 -5.7947 24 1 9.4565 3.8058 -6.9556 25 1 10.0667 3.5885 -4.6190 26 6 5.0466 5.2216 -3.9499 27 6 4.4253 4.0361 -4.6927 28 6 3.4311 1.2849 -0.0002 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2127 2.3203 -0.0005 33 1 1.3338 4.5114 -0.0011 34 1 3.7920 4.6382 -0.0024 35 1 5.2419 4.3412 1.2721 36 1 6.3554 3.1163 1.9638 37 1 6.5002 6.2902 0.8201 38 1 7.7408 5.6822 1.9423 39 1 8.2066 6.2367 0.3163 40 1 7.6134 4.4085 -1.7904 41 1 6.0862 5.1924 -1.2853 42 1 4.4462 2.2695 -2.4246 43 1 4.1896 3.9277 -1.8306 44 1 7.1106 4.9118 -6.7600 45 1 4.4123 5.7664 -3.2505 46 1 5.7796 5.8237 -4.4869 47 1 4.7498 3.8587 -5.7180 48 1 3.3821 3.8003 -4.4824 49 1 4.0206 0.3800 0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602803823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:22 Heat of formation + Delta-G solvation = 34.020781 kcal Electronic energy + Delta-G solvation = -27733.194261 eV Core-core repulsion = 24240.894366 eV Total energy + Delta-G solvation = -3492.299895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51391 -39.17138 -36.93147 -36.16642 -32.89839 -31.62259 -31.00250 -30.33731 -28.37077 -27.33950 -26.08885 -25.53180 -24.16056 -22.53137 -21.99877 -20.67412 -19.86189 -19.71336 -18.73017 -17.45727 -16.27223 -16.09031 -15.87201 -15.74186 -15.41504 -14.77610 -14.50437 -14.18120 -13.63933 -13.46747 -13.35054 -13.08797 -13.02023 -12.76771 -12.36888 -12.27522 -12.05517 -11.90564 -11.62073 -11.45706 -11.13171 -11.00467 -10.92987 -10.80238 -10.69349 -10.52603 -10.45188 -10.26767 -10.14338 -9.96203 -9.86308 -9.28714 -8.74678 -8.63271 -8.24119 -8.01154 -7.91271 -7.38034 -5.81679 -3.83464 1.42740 1.57403 3.26321 3.38568 3.43073 3.46900 3.84195 4.51321 4.69847 4.81994 4.83009 4.96539 5.02351 5.05504 5.07849 5.16361 5.22354 5.26280 5.33878 5.46164 5.50729 5.65861 5.68486 5.80807 5.88403 5.96228 5.99411 6.09589 6.13314 6.21727 6.25241 6.33506 6.37599 6.38764 6.50255 6.54733 6.69817 6.73439 6.77941 6.81862 6.88866 6.98417 7.14191 7.29577 7.41210 7.44855 7.73867 7.83531 8.00166 8.19620 8.31957 8.71374 9.16973 9.70322 11.14775 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.004689 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.473818 B = 5969.596711 C = 7036.734454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.213 4.213 5 C -0.084 4.084 6 C -0.140 4.140 7 C -0.043 4.043 8 C 0.103 3.897 9 H 0.087 0.913 10 C -0.130 4.130 11 C -0.109 4.109 12 H 0.080 0.920 13 C -0.138 4.138 14 C 0.062 3.938 15 N -0.492 5.492 16 C 0.092 3.908 17 C 0.022 3.978 18 C -0.449 4.449 19 H 0.074 0.926 20 C 0.051 3.949 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.191 4.191 27 C -0.189 4.189 28 C -0.140 4.140 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.029 0.971 44 H 0.255 0.745 45 H 0.034 0.966 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.036 0.964 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -2.352 15.040 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.232 4.232 5 C -0.102 4.102 6 C -0.159 4.159 7 C -0.044 4.044 8 C -0.005 4.005 9 H 0.105 0.895 10 C -0.168 4.168 11 C -0.128 4.128 12 H 0.098 0.902 13 C -0.196 4.196 14 C -0.065 4.065 15 N -0.214 5.214 16 C -0.035 4.035 17 C 0.022 3.978 18 C -0.487 4.487 19 H 0.092 0.908 20 C -0.148 4.148 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.229 4.229 27 C -0.228 4.228 28 C -0.159 4.159 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.055 0.945 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.978 -2.830 14.623 16.896 hybrid contribution -0.199 0.529 -0.247 0.617 sum -8.177 -2.300 14.376 16.698 Atomic orbital electron populations 1.23005 0.78803 1.03608 1.01201 1.86061 1.21051 1.27190 1.88971 1.18960 0.92263 0.83944 0.97079 1.21116 0.99600 0.92466 1.10008 1.20829 0.94457 0.96851 0.98049 1.20872 0.93628 0.98145 1.03244 1.20050 0.96475 0.92164 0.95738 1.21618 0.88029 0.99787 0.91082 0.89502 1.22995 0.98123 0.97888 0.97798 1.22391 0.98051 0.96084 0.96273 0.90180 1.21676 1.01676 0.96072 1.00156 1.23036 0.99278 0.90390 0.93830 1.63936 1.23998 1.28204 1.05302 1.22047 0.90510 0.98742 0.92250 1.19018 0.94670 0.94321 0.89831 1.20662 0.98542 1.25497 1.04014 0.90826 1.25052 0.97601 0.95484 0.96701 1.70023 1.36840 1.32895 1.12870 0.86647 0.84866 0.78902 0.77445 1.20455 1.21746 1.20397 1.22868 1.03310 0.93176 1.03514 1.22787 0.93680 1.05047 1.01267 1.20287 0.91112 0.98244 1.06255 0.92714 0.88497 0.92926 0.85954 0.86120 0.86152 0.91195 0.91398 0.92963 0.93121 0.92360 0.88711 0.93974 0.92394 0.95299 0.93448 0.94760 0.87404 0.87268 0.94501 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.26 10.50 -19.43 -0.20 -4.46 16 3 C 0.12 1.76 6.69 -39.22 -0.26 1.50 16 4 C -0.21 -2.78 9.04 -39.44 -0.36 -3.13 16 5 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 6 C -0.14 -2.07 6.26 -39.56 -0.25 -2.31 16 7 C -0.04 -0.66 3.23 -104.65 -0.34 -1.00 16 8 C 0.10 1.61 3.64 -67.88 -0.25 1.36 16 9 H 0.09 1.33 7.95 -51.93 -0.41 0.92 16 10 C -0.13 -1.73 5.79 -24.91 -0.14 -1.88 16 11 C -0.11 -1.55 3.63 -88.48 -0.32 -1.87 16 12 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 13 C -0.14 -1.69 9.30 37.16 0.35 -1.35 16 14 C 0.06 1.14 4.94 -2.30 -0.01 1.12 16 15 N -0.49 -9.40 4.29 -224.73 -0.96 -10.37 16 16 C 0.09 1.94 3.85 -3.82 -0.01 1.93 16 17 C 0.02 0.55 1.68 -155.66 -0.26 0.29 16 18 C -0.45 -12.04 7.33 -34.44 -0.25 -12.29 16 19 H 0.07 1.99 7.21 -52.49 -0.38 1.62 16 20 C 0.05 1.40 5.27 -17.82 -0.09 1.30 16 21 N -0.89 -24.83 8.59 55.43 0.48 -24.36 16 22 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C -0.19 -4.76 9.14 -26.69 -0.24 -5.01 16 27 C -0.19 -4.84 9.39 -26.69 -0.25 -5.09 16 28 C -0.14 -2.12 9.50 -39.43 -0.37 -2.50 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.12 1.29 6.30 -52.48 -0.33 0.96 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.77 6.79 -52.49 -0.36 1.41 16 35 H 0.07 0.91 6.03 -51.93 -0.31 0.60 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 2.00 7.15 -51.93 -0.37 1.63 16 41 H 0.04 0.81 7.47 -51.93 -0.39 0.42 16 42 H 0.06 1.30 7.57 -51.93 -0.39 0.90 16 43 H 0.03 0.59 4.65 -51.93 -0.24 0.35 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 46 H 0.11 2.97 6.28 -51.93 -0.33 2.64 16 47 H 0.11 3.07 6.28 -51.93 -0.33 2.74 16 48 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.13 1.88 7.99 -52.48 -0.42 1.46 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -28.93 371.14 -10.59 -39.51 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.99 Total: 6.90 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -2.48 Total: -29.19 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.49 Total: -34.73 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.93 -10.59 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.535 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds