Wall clock time and date at job start Tue Mar 31 2020 10:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99724 * 2 1 4 4 C 1.38754 * 120.05849 * 359.97405 * 3 2 1 5 5 C 1.38115 * 119.94773 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05470 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11335 * 359.95304 * 6 5 4 8 8 C 1.50694 * 119.97371 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.87959 * 167.87202 * 8 7 6 10 10 C 1.54312 * 109.89071 * 46.67091 * 8 7 6 11 11 C 1.55144 * 103.02113 * 218.30844 * 10 8 7 12 12 H 1.08994 * 110.99017 * 277.56066 * 11 10 8 13 13 C 1.53001 * 111.02303 * 153.75815 * 11 10 8 14 14 C 1.54901 * 101.65118 * 35.65370 * 11 10 8 15 15 N 1.47448 * 109.89127 * 288.89851 * 8 7 6 16 16 C 1.46901 * 110.99531 * 356.14871 * 15 8 7 17 17 C 1.53002 * 109.46870 * 177.30959 * 16 15 8 18 18 C 1.50698 * 115.54846 * 34.41934 * 17 16 15 19 19 H 1.07998 * 120.00355 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99844 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00194 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46762 * 60.00197 * 22 20 18 24 24 H 1.48504 * 109.47623 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47424 * 300.00722 * 22 20 18 26 26 C 1.52996 * 117.49941 * 248.74869 * 17 16 15 27 27 C 1.53001 * 117.49728 * 180.08737 * 17 16 15 28 28 C 1.38168 * 120.05380 * 0.05013 * 7 6 5 29 29 H 1.09006 * 109.47236 * 60.00528 * 1 2 3 30 30 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47533 * 300.00149 * 1 2 3 32 32 H 1.08007 * 120.02547 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.97615 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.94406 * 179.97438 * 6 5 4 35 35 H 1.09004 * 110.70632 * 336.69595 * 10 8 7 36 36 H 1.09006 * 110.70591 * 99.92931 * 10 8 7 37 37 H 1.09001 * 109.47179 * 306.26044 * 13 11 10 38 38 H 1.08993 * 109.47088 * 66.25919 * 13 11 10 39 39 H 1.09001 * 109.47026 * 186.26458 * 13 11 10 40 40 H 1.08997 * 110.37587 * 204.09961 * 14 11 10 41 41 H 1.09000 * 110.46857 * 81.80271 * 14 11 10 42 42 H 1.08994 * 109.47423 * 297.30910 * 16 15 8 43 43 H 1.09003 * 109.46989 * 57.31117 * 16 15 8 44 44 H 0.97002 * 120.00130 * 179.97438 * 21 20 18 45 45 H 1.09006 * 117.49802 * 0.02562 * 26 17 16 46 46 H 1.09005 * 117.50044 * 145.01965 * 26 17 16 47 47 H 1.08999 * 117.49903 * 214.97611 * 27 17 16 48 48 H 1.09001 * 117.49996 * 359.97438 * 27 17 16 49 49 H 1.08004 * 120.03025 * 180.25619 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5173 -0.0006 8 6 5.5606 2.5984 -0.0006 9 1 5.9847 1.6178 0.2156 10 6 6.0312 3.6218 1.0541 11 6 7.2298 4.3170 0.3562 12 1 8.1395 3.7259 0.4617 13 6 7.4341 5.7333 0.8977 14 6 6.7571 4.3496 -1.1186 15 7 6.0375 3.0728 -1.3128 16 6 4.9194 3.2360 -2.2515 17 6 5.4435 3.7918 -3.5771 18 6 6.8182 3.3239 -3.9799 19 1 7.3637 2.6411 -3.3455 20 6 7.3796 3.7675 -5.1586 21 7 6.7155 4.5994 -5.9310 22 14 9.0838 3.1880 -5.6576 23 1 9.0834 1.7093 -5.7947 24 1 9.4565 3.8058 -6.9556 25 1 10.0667 3.5885 -4.6190 26 6 5.0466 5.2216 -3.9499 27 6 4.4253 4.0361 -4.6927 28 6 3.4311 1.2849 -0.0002 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2127 2.3203 -0.0005 33 1 1.3338 4.5114 -0.0011 34 1 3.7920 4.6382 -0.0024 35 1 5.2419 4.3412 1.2721 36 1 6.3554 3.1163 1.9638 37 1 6.5002 6.2902 0.8201 38 1 7.7408 5.6822 1.9423 39 1 8.2066 6.2367 0.3163 40 1 7.6134 4.4085 -1.7904 41 1 6.0862 5.1924 -1.2853 42 1 4.4462 2.2695 -2.4246 43 1 4.1896 3.9277 -1.8306 44 1 7.1106 4.9118 -6.7600 45 1 4.4123 5.7664 -3.2505 46 1 5.7796 5.8237 -4.4869 47 1 4.7498 3.8587 -5.7180 48 1 3.3821 3.8003 -4.4824 49 1 4.0206 0.3800 0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602803823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:22 Heat of formation + Delta-G solvation = 19.620122 kcal Electronic energy + Delta-G solvation = -27733.818720 eV Core-core repulsion = 24240.894366 eV Total energy + Delta-G solvation = -3492.924355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67969 -40.32364 -38.32279 -37.73179 -34.23629 -33.42785 -32.41819 -31.41178 -29.54395 -28.14566 -27.67880 -27.34073 -25.54482 -23.61528 -23.20943 -22.67362 -21.26162 -20.89033 -20.48965 -18.58367 -17.81681 -17.39520 -17.15937 -16.85071 -16.61502 -16.39470 -15.92930 -15.46696 -15.13378 -14.85191 -14.72982 -14.47920 -14.16106 -13.94024 -13.73371 -13.32079 -13.26302 -13.10048 -12.96148 -12.88155 -12.72327 -12.61454 -12.38986 -12.32749 -12.14168 -11.92828 -11.85473 -11.76923 -11.61753 -11.38244 -11.37492 -11.15412 -10.69812 -10.25660 -9.98126 -9.82062 -9.08712 -8.85397 -7.91186 -5.98277 0.35077 0.49395 1.45022 1.45646 1.53182 2.38418 2.49398 2.74470 3.10662 3.36600 3.66459 3.81150 3.87149 3.92836 3.98352 4.12551 4.16909 4.29135 4.39182 4.40312 4.44802 4.48292 4.56551 4.59820 4.69072 4.71990 4.73308 4.79198 4.82944 4.91008 4.94297 5.01149 5.04262 5.13583 5.15465 5.17020 5.29662 5.31553 5.33691 5.43659 5.47420 5.50405 5.55534 5.68179 5.71436 5.81264 6.01299 6.21577 6.33592 6.44513 6.48480 6.67020 7.05432 7.57555 9.03026 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.004689 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.473818 B = 5969.596711 C = 7036.734454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.116 3.884 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.154 4.154 7 C -0.051 4.051 8 C 0.101 3.899 9 H 0.087 0.913 10 C -0.118 4.118 11 C -0.100 4.100 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.067 3.933 15 N -0.511 5.511 16 C 0.111 3.889 17 C 0.017 3.983 18 C -0.458 4.458 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.907 5.907 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.272 1.272 26 C -0.181 4.181 27 C -0.196 4.196 28 C -0.160 4.160 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.252 0.748 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 -2.406 17.142 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.070 3.930 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.172 4.172 7 C -0.053 4.053 8 C -0.006 4.006 9 H 0.105 0.895 10 C -0.156 4.156 11 C -0.119 4.119 12 H 0.099 0.901 13 C -0.191 4.191 14 C -0.061 4.061 15 N -0.234 5.234 16 C -0.017 4.017 17 C 0.016 3.984 18 C -0.496 4.496 19 H 0.083 0.917 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.777 3.223 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.219 4.219 27 C -0.234 4.234 28 C -0.179 4.179 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.974 -2.892 16.739 19.212 hybrid contribution 0.025 0.478 -0.906 1.024 sum -8.950 -2.415 15.833 18.347 Atomic orbital electron populations 1.23329 0.76514 1.05486 1.02188 1.86041 1.23471 1.26902 1.88796 1.19108 0.92214 0.84893 0.96744 1.21431 1.01001 0.91784 1.08779 1.21157 0.94126 0.98042 0.96861 1.20955 0.94446 0.97763 1.04062 1.19987 0.96069 0.92569 0.96644 1.21637 0.88754 1.00297 0.89909 0.89492 1.22947 0.97636 0.97328 0.97715 1.22335 0.98392 0.97735 0.93446 0.90051 1.21649 1.01706 0.94397 1.01373 1.22863 0.97604 0.89619 0.96023 1.63760 1.23759 1.28680 1.07154 1.21733 0.91114 0.97717 0.91088 1.19194 0.93821 0.94142 0.91250 1.20825 0.99568 1.25256 1.03938 0.91662 1.25693 1.00718 0.95773 0.96868 1.70174 1.37937 1.33699 1.12937 0.85743 0.81287 0.78239 0.77047 1.20414 1.21681 1.19753 1.22671 1.02854 0.92940 1.03410 1.22671 0.94729 1.05934 1.00076 1.20394 0.92004 0.98181 1.07314 0.92203 0.86382 0.91319 0.83251 0.83672 0.86271 0.90477 0.89049 0.92822 0.90684 0.92850 0.92314 0.95238 0.93962 0.94228 0.93815 0.92732 0.90125 0.90087 0.92792 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.53 10.50 -92.43 -0.97 -9.50 16 3 C 0.12 3.16 6.69 22.51 0.15 3.31 16 4 C -0.21 -4.98 9.04 22.36 0.20 -4.78 16 5 C -0.08 -2.04 10.04 22.25 0.22 -1.81 16 6 C -0.15 -4.28 6.26 22.28 0.14 -4.14 16 7 C -0.05 -1.53 3.23 -19.88 -0.06 -1.59 16 8 C 0.10 3.10 3.64 44.51 0.16 3.26 16 9 H 0.09 2.62 7.95 -2.38 -0.02 2.60 16 10 C -0.12 -2.91 5.79 31.77 0.18 -2.73 16 11 C -0.10 -2.72 3.63 -9.41 -0.03 -2.75 16 12 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 13 C -0.13 -3.00 9.30 71.98 0.67 -2.33 16 14 C 0.07 2.45 4.94 86.77 0.43 2.88 16 15 N -0.51 -19.63 4.29 -864.90 -3.71 -23.35 16 16 C 0.11 4.73 3.85 86.30 0.33 5.06 16 17 C 0.02 0.83 1.68 -52.93 -0.09 0.75 16 18 C -0.46 -25.13 7.33 25.60 0.19 -24.95 16 19 H 0.07 3.63 7.21 -2.91 -0.02 3.61 16 20 C 0.01 0.38 5.27 84.65 0.45 0.83 16 21 N -0.91 -52.16 8.59 21.45 0.18 -51.98 16 22 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 26 C -0.18 -9.14 9.14 30.62 0.28 -8.86 16 27 C -0.20 -10.15 9.39 30.62 0.29 -9.86 16 28 C -0.16 -4.77 9.50 22.37 0.21 -4.56 16 29 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16 30 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 32 H 0.15 2.61 6.30 -2.91 -0.02 2.60 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.12 3.31 6.79 -2.91 -0.02 3.29 16 35 H 0.08 1.81 6.03 -2.38 -0.01 1.80 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 2.56 7.15 -2.39 -0.02 2.54 16 41 H 0.03 1.14 7.47 -2.39 -0.02 1.12 16 42 H 0.04 1.91 7.57 -2.39 -0.02 1.89 16 43 H 0.04 1.60 4.65 -2.39 -0.01 1.59 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.05 2.50 8.05 -2.38 -0.02 2.48 16 46 H 0.08 4.55 6.28 -2.38 -0.01 4.54 16 47 H 0.08 4.69 6.28 -2.39 -0.01 4.67 16 48 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.13 3.69 7.99 -2.91 -0.02 3.67 16 Total: -1.00 -63.52 371.14 3.28 -60.24 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.93 Total: 28.67 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 4.83 Total: -50.86 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -3.53 Total: -75.32 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.97 Total: -9.50 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.52 3.28 -60.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.855 kcal (2) G-P(sol) polarization free energy of solvation -63.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds