Wall clock time and date at job start Tue Mar 31 2020 10:52:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35901 * 116.99724 * 2 1
4 4 C 1.38754 * 120.05849 * 359.97405 * 3 2 1
5 5 C 1.38115 * 119.94773 * 180.02562 * 4 3 2
6 6 C 1.38289 * 120.05470 * 0.02562 * 5 4 3
7 7 C 1.38242 * 120.11335 * 359.95304 * 6 5 4
8 8 C 1.50694 * 119.97371 * 180.02562 * 7 6 5
9 9 H 1.09006 * 109.87959 * 167.87202 * 8 7 6
10 10 C 1.54312 * 109.89071 * 46.67091 * 8 7 6
11 11 C 1.55144 * 103.02113 * 218.30844 * 10 8 7
12 12 H 1.08994 * 110.99017 * 277.56066 * 11 10 8
13 13 C 1.53001 * 111.02303 * 153.75815 * 11 10 8
14 14 C 1.54901 * 101.65118 * 35.65370 * 11 10 8
15 15 N 1.47448 * 109.89127 * 288.89851 * 8 7 6
16 16 C 1.46901 * 110.99531 * 356.14871 * 15 8 7
17 17 C 1.53002 * 109.46870 * 177.30959 * 16 15 8
18 18 C 1.50698 * 115.54846 * 34.41934 * 17 16 15
19 19 H 1.07998 * 120.00355 * 359.97438 * 18 17 16
20 20 C 1.37877 * 119.99844 * 179.97438 * 18 17 16
21 21 N 1.31517 * 120.00194 * 0.02562 * 20 18 17
22 22 Si 1.86795 * 120.00120 * 179.97438 * 20 18 17
23 23 H 1.48502 * 109.46762 * 60.00197 * 22 20 18
24 24 H 1.48504 * 109.47623 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47424 * 300.00722 * 22 20 18
26 26 C 1.52996 * 117.49941 * 248.74869 * 17 16 15
27 27 C 1.53001 * 117.49728 * 180.08737 * 17 16 15
28 28 C 1.38168 * 120.05380 * 0.05013 * 7 6 5
29 29 H 1.09006 * 109.47236 * 60.00528 * 1 2 3
30 30 H 1.09003 * 109.46851 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47533 * 300.00149 * 1 2 3
32 32 H 1.08007 * 120.02547 * 0.02562 * 4 3 2
33 33 H 1.08000 * 119.97615 * 180.02562 * 5 4 3
34 34 H 1.07998 * 119.94406 * 179.97438 * 6 5 4
35 35 H 1.09004 * 110.70632 * 336.69595 * 10 8 7
36 36 H 1.09006 * 110.70591 * 99.92931 * 10 8 7
37 37 H 1.09001 * 109.47179 * 306.26044 * 13 11 10
38 38 H 1.08993 * 109.47088 * 66.25919 * 13 11 10
39 39 H 1.09001 * 109.47026 * 186.26458 * 13 11 10
40 40 H 1.08997 * 110.37587 * 204.09961 * 14 11 10
41 41 H 1.09000 * 110.46857 * 81.80271 * 14 11 10
42 42 H 1.08994 * 109.47423 * 297.30910 * 16 15 8
43 43 H 1.09003 * 109.46989 * 57.31117 * 16 15 8
44 44 H 0.97002 * 120.00130 * 179.97438 * 21 20 18
45 45 H 1.09006 * 117.49802 * 0.02562 * 26 17 16
46 46 H 1.09005 * 117.50044 * 145.01965 * 26 17 16
47 47 H 1.08999 * 117.49903 * 214.97611 * 27 17 16
48 48 H 1.09001 * 117.49996 * 359.97438 * 27 17 16
49 49 H 1.08004 * 120.03025 * 180.25619 * 28 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2913 2.3753 -0.0005
5 6 1.9207 3.6048 -0.0011
6 6 3.3018 3.6759 -0.0016
7 6 4.0559 2.5173 -0.0006
8 6 5.5606 2.5984 -0.0006
9 1 5.9847 1.6178 0.2156
10 6 6.0312 3.6218 1.0541
11 6 7.2298 4.3170 0.3562
12 1 8.1395 3.7259 0.4617
13 6 7.4341 5.7333 0.8977
14 6 6.7571 4.3496 -1.1186
15 7 6.0375 3.0728 -1.3128
16 6 4.9194 3.2360 -2.2515
17 6 5.4435 3.7918 -3.5771
18 6 6.8182 3.3239 -3.9799
19 1 7.3637 2.6411 -3.3455
20 6 7.3796 3.7675 -5.1586
21 7 6.7155 4.5994 -5.9310
22 14 9.0838 3.1880 -5.6576
23 1 9.0834 1.7093 -5.7947
24 1 9.4565 3.8058 -6.9556
25 1 10.0667 3.5885 -4.6190
26 6 5.0466 5.2216 -3.9499
27 6 4.4253 4.0361 -4.6927
28 6 3.4311 1.2849 -0.0002
29 1 -0.3634 0.5138 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8900
32 1 0.2127 2.3203 -0.0005
33 1 1.3338 4.5114 -0.0011
34 1 3.7920 4.6382 -0.0024
35 1 5.2419 4.3412 1.2721
36 1 6.3554 3.1163 1.9638
37 1 6.5002 6.2902 0.8201
38 1 7.7408 5.6822 1.9423
39 1 8.2066 6.2367 0.3163
40 1 7.6134 4.4085 -1.7904
41 1 6.0862 5.1924 -1.2853
42 1 4.4462 2.2695 -2.4246
43 1 4.1896 3.9277 -1.8306
44 1 7.1106 4.9118 -6.7600
45 1 4.4123 5.7664 -3.2505
46 1 5.7796 5.8237 -4.4869
47 1 4.7498 3.8587 -5.7180
48 1 3.3821 3.8003 -4.4824
49 1 4.0206 0.3800 0.0048
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602803823.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:22
Heat of formation + Delta-G solvation = 19.620122 kcal
Electronic energy + Delta-G solvation = -27733.818720 eV
Core-core repulsion = 24240.894366 eV
Total energy + Delta-G solvation = -3492.924355 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.67969 -40.32364 -38.32279 -37.73179 -34.23629 -33.42785 -32.41819 -31.41178
-29.54395 -28.14566 -27.67880 -27.34073 -25.54482 -23.61528 -23.20943 -22.67362
-21.26162 -20.89033 -20.48965 -18.58367 -17.81681 -17.39520 -17.15937 -16.85071
-16.61502 -16.39470 -15.92930 -15.46696 -15.13378 -14.85191 -14.72982 -14.47920
-14.16106 -13.94024 -13.73371 -13.32079 -13.26302 -13.10048 -12.96148 -12.88155
-12.72327 -12.61454 -12.38986 -12.32749 -12.14168 -11.92828 -11.85473 -11.76923
-11.61753 -11.38244 -11.37492 -11.15412 -10.69812 -10.25660 -9.98126 -9.82062
-9.08712 -8.85397 -7.91186 -5.98277 0.35077 0.49395 1.45022 1.45646
1.53182 2.38418 2.49398 2.74470 3.10662 3.36600 3.66459 3.81150
3.87149 3.92836 3.98352 4.12551 4.16909 4.29135 4.39182 4.40312
4.44802 4.48292 4.56551 4.59820 4.69072 4.71990 4.73308 4.79198
4.82944 4.91008 4.94297 5.01149 5.04262 5.13583 5.15465 5.17020
5.29662 5.31553 5.33691 5.43659 5.47420 5.50405 5.55534 5.68179
5.71436 5.81264 6.01299 6.21577 6.33592 6.44513 6.48480 6.67020
7.05432 7.57555 9.03026
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.012647 B = 0.004689 C = 0.003978
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2213.473818 B = 5969.596711 C = 7036.734454
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.338 6.338
3 C 0.116 3.884
4 C -0.211 4.211
5 C -0.084 4.084
6 C -0.154 4.154
7 C -0.051 4.051
8 C 0.101 3.899
9 H 0.087 0.913
10 C -0.118 4.118
11 C -0.100 4.100
12 H 0.081 0.919
13 C -0.134 4.134
14 C 0.067 3.933
15 N -0.511 5.511
16 C 0.111 3.889
17 C 0.017 3.983
18 C -0.458 4.458
19 H 0.065 0.935
20 C 0.007 3.993
21 N -0.907 5.907
22 Si 0.950 3.050
23 H -0.278 1.278
24 H -0.291 1.291
25 H -0.272 1.272
26 C -0.181 4.181
27 C -0.196 4.196
28 C -0.160 4.160
29 H 0.059 0.941
30 H 0.118 0.882
31 H 0.068 0.932
32 H 0.150 0.850
33 H 0.146 0.854
34 H 0.119 0.881
35 H 0.077 0.923
36 H 0.091 0.909
37 H 0.053 0.947
38 H 0.074 0.926
39 H 0.052 0.948
40 H 0.058 0.942
41 H 0.029 0.971
42 H 0.042 0.958
43 H 0.040 0.960
44 H 0.252 0.748
45 H 0.054 0.946
46 H 0.080 0.920
47 H 0.081 0.919
48 H 0.054 0.946
49 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.441 -2.406 17.142 19.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.252 6.252
3 C 0.070 3.930
4 C -0.230 4.230
5 C -0.102 4.102
6 C -0.172 4.172
7 C -0.053 4.053
8 C -0.006 4.006
9 H 0.105 0.895
10 C -0.156 4.156
11 C -0.119 4.119
12 H 0.099 0.901
13 C -0.191 4.191
14 C -0.061 4.061
15 N -0.234 5.234
16 C -0.017 4.017
17 C 0.016 3.984
18 C -0.496 4.496
19 H 0.083 0.917
20 C -0.191 4.191
21 N -0.547 5.547
22 Si 0.777 3.223
23 H -0.204 1.204
24 H -0.217 1.217
25 H -0.198 1.198
26 C -0.219 4.219
27 C -0.234 4.234
28 C -0.179 4.179
29 H 0.078 0.922
30 H 0.136 0.864
31 H 0.087 0.913
32 H 0.167 0.833
33 H 0.163 0.837
34 H 0.137 0.863
35 H 0.095 0.905
36 H 0.110 0.890
37 H 0.072 0.928
38 H 0.093 0.907
39 H 0.072 0.928
40 H 0.077 0.923
41 H 0.048 0.952
42 H 0.060 0.940
43 H 0.058 0.942
44 H 0.062 0.938
45 H 0.073 0.927
46 H 0.099 0.901
47 H 0.099 0.901
48 H 0.072 0.928
49 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -8.974 -2.892 16.739 19.212
hybrid contribution 0.025 0.478 -0.906 1.024
sum -8.950 -2.415 15.833 18.347
Atomic orbital electron populations
1.23329 0.76514 1.05486 1.02188 1.86041 1.23471 1.26902 1.88796
1.19108 0.92214 0.84893 0.96744 1.21431 1.01001 0.91784 1.08779
1.21157 0.94126 0.98042 0.96861 1.20955 0.94446 0.97763 1.04062
1.19987 0.96069 0.92569 0.96644 1.21637 0.88754 1.00297 0.89909
0.89492 1.22947 0.97636 0.97328 0.97715 1.22335 0.98392 0.97735
0.93446 0.90051 1.21649 1.01706 0.94397 1.01373 1.22863 0.97604
0.89619 0.96023 1.63760 1.23759 1.28680 1.07154 1.21733 0.91114
0.97717 0.91088 1.19194 0.93821 0.94142 0.91250 1.20825 0.99568
1.25256 1.03938 0.91662 1.25693 1.00718 0.95773 0.96868 1.70174
1.37937 1.33699 1.12937 0.85743 0.81287 0.78239 0.77047 1.20414
1.21681 1.19753 1.22671 1.02854 0.92940 1.03410 1.22671 0.94729
1.05934 1.00076 1.20394 0.92004 0.98181 1.07314 0.92203 0.86382
0.91319 0.83251 0.83672 0.86271 0.90477 0.89049 0.92822 0.90684
0.92850 0.92314 0.95238 0.93962 0.94228 0.93815 0.92732 0.90125
0.90087 0.92792 0.85651
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.29 9.81 113.37 1.11 1.40 16
2 O -0.34 -8.53 10.50 -92.43 -0.97 -9.50 16
3 C 0.12 3.16 6.69 22.51 0.15 3.31 16
4 C -0.21 -4.98 9.04 22.36 0.20 -4.78 16
5 C -0.08 -2.04 10.04 22.25 0.22 -1.81 16
6 C -0.15 -4.28 6.26 22.28 0.14 -4.14 16
7 C -0.05 -1.53 3.23 -19.88 -0.06 -1.59 16
8 C 0.10 3.10 3.64 44.51 0.16 3.26 16
9 H 0.09 2.62 7.95 -2.38 -0.02 2.60 16
10 C -0.12 -2.91 5.79 31.77 0.18 -2.73 16
11 C -0.10 -2.72 3.63 -9.41 -0.03 -2.75 16
12 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
13 C -0.13 -3.00 9.30 71.98 0.67 -2.33 16
14 C 0.07 2.45 4.94 86.77 0.43 2.88 16
15 N -0.51 -19.63 4.29 -864.90 -3.71 -23.35 16
16 C 0.11 4.73 3.85 86.30 0.33 5.06 16
17 C 0.02 0.83 1.68 -52.93 -0.09 0.75 16
18 C -0.46 -25.13 7.33 25.60 0.19 -24.95 16
19 H 0.07 3.63 7.21 -2.91 -0.02 3.61 16
20 C 0.01 0.38 5.27 84.65 0.45 0.83 16
21 N -0.91 -52.16 8.59 21.45 0.18 -51.98 16
22 Si 0.95 44.75 29.54 68.60 2.03 46.77 16
23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16
24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16
25 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16
26 C -0.18 -9.14 9.14 30.62 0.28 -8.86 16
27 C -0.20 -10.15 9.39 30.62 0.29 -9.86 16
28 C -0.16 -4.77 9.50 22.37 0.21 -4.56 16
29 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16
30 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16
32 H 0.15 2.61 6.30 -2.91 -0.02 2.60 16
33 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16
34 H 0.12 3.31 6.79 -2.91 -0.02 3.29 16
35 H 0.08 1.81 6.03 -2.38 -0.01 1.80 16
36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16
37 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16
38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
40 H 0.06 2.56 7.15 -2.39 -0.02 2.54 16
41 H 0.03 1.14 7.47 -2.39 -0.02 1.12 16
42 H 0.04 1.91 7.57 -2.39 -0.02 1.89 16
43 H 0.04 1.60 4.65 -2.39 -0.01 1.59 16
44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16
45 H 0.05 2.50 8.05 -2.38 -0.02 2.48 16
46 H 0.08 4.55 6.28 -2.38 -0.01 4.54 16
47 H 0.08 4.69 6.28 -2.39 -0.01 4.67 16
48 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16
49 H 0.13 3.69 7.99 -2.91 -0.02 3.67 16
Total: -1.00 -63.52 371.14 3.28 -60.24
By element:
Atomic # 1 Polarization: 27.75 SS G_CDS: 0.93 Total: 28.67 kcal
Atomic # 6 Polarization: -55.69 SS G_CDS: 4.83 Total: -50.86 kcal
Atomic # 7 Polarization: -71.80 SS G_CDS: -3.53 Total: -75.32 kcal
Atomic # 8 Polarization: -8.53 SS G_CDS: -0.97 Total: -9.50 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -63.52 3.28 -60.24 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602803823.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.855 kcal
(2) G-P(sol) polarization free energy of solvation -63.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.620 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds