Wall clock time and date at job start Tue Mar 31 2020 11:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35891 * 117.00035 * 2 1 4 4 C 1.38758 * 120.05880 * 0.24911 * 3 2 1 5 5 C 1.38117 * 119.94599 * 180.27908 * 4 3 2 6 6 C 1.38288 * 120.05514 * 359.72257 * 5 4 3 7 7 C 1.38242 * 120.11368 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.97490 * 179.97438 * 7 6 5 9 9 H 1.09001 * 112.84993 * 168.77824 * 8 7 6 10 10 C 1.53780 * 113.61785 * 299.98241 * 8 7 6 11 11 C 1.53781 * 87.08367 * 139.97625 * 10 8 7 12 12 H 1.08993 * 113.61347 * 220.01789 * 11 10 8 13 13 N 1.46905 * 113.61016 * 89.20376 * 11 10 8 14 14 C 1.46892 * 111.00267 * 56.04198 * 13 11 10 15 15 C 1.46903 * 110.99615 * 180.02562 * 13 11 10 16 16 C 1.53004 * 109.47097 * 161.64157 * 15 13 11 17 17 C 1.50690 * 115.55076 * 148.00726 * 16 15 13 18 18 H 1.08011 * 120.00050 * 114.54612 * 17 16 15 19 19 C 1.37876 * 120.00286 * 294.55016 * 17 16 15 20 20 N 1.31516 * 120.00226 * 5.08440 * 19 17 16 21 21 Si 1.86802 * 119.99950 * 185.08519 * 19 17 16 22 22 H 1.48500 * 109.47258 * 90.00203 * 21 19 17 23 23 H 1.48509 * 109.47019 * 209.99998 * 21 19 17 24 24 H 1.48497 * 109.47408 * 329.99769 * 21 19 17 25 25 C 1.53005 * 117.49625 * 2.30309 * 16 15 13 26 26 C 1.52996 * 117.49730 * 293.68111 * 16 15 13 27 27 C 1.53782 * 87.08086 * 334.56903 * 11 10 8 28 28 C 1.38168 * 120.05317 * 359.97438 * 7 6 5 29 29 H 1.09000 * 109.46950 * 299.99950 * 1 2 3 30 30 H 1.08994 * 109.46984 * 60.00316 * 1 2 3 31 31 H 1.09007 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.02405 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.97493 * 179.74620 * 5 4 3 34 34 H 1.08002 * 119.94487 * 180.02562 * 6 5 4 35 35 H 1.08997 * 113.61332 * 254.52841 * 10 8 7 36 36 H 1.09006 * 113.61300 * 25.34072 * 10 8 7 37 37 H 1.09008 * 109.47174 * 52.10771 * 14 13 11 38 38 H 1.09001 * 109.47238 * 172.10024 * 14 13 11 39 39 H 1.08999 * 109.47706 * 292.10772 * 14 13 11 40 40 H 1.09001 * 109.47021 * 281.63924 * 15 13 11 41 41 H 1.09000 * 109.47606 * 41.64235 * 15 13 11 42 42 H 0.97000 * 120.00186 * 185.00595 * 20 19 17 43 43 H 1.09002 * 117.49989 * 359.97438 * 25 16 15 44 44 H 1.09001 * 117.49760 * 145.02180 * 25 16 15 45 45 H 1.08998 * 117.49948 * 214.97596 * 26 16 15 46 46 H 1.09005 * 117.49962 * 0.02562 * 26 16 15 47 47 H 1.08994 * 113.61129 * 270.87822 * 27 11 10 48 48 H 1.09003 * 113.61132 * 139.98444 * 27 11 10 49 49 H 1.07997 * 120.02393 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6047 -0.0006 6 6 3.3020 3.6757 -0.0059 7 6 4.0560 2.5170 -0.0058 8 6 5.5608 2.5980 -0.0121 9 1 6.0372 1.6375 0.1840 10 6 6.1332 3.3310 -1.2369 11 6 7.1504 3.9732 -0.2789 12 1 7.3452 5.0246 -0.4898 13 7 8.3804 3.1871 -0.1134 14 6 9.0207 2.9321 -1.4106 15 6 9.3090 3.8510 0.8112 16 6 10.3383 2.8375 1.3154 17 6 11.7067 3.3941 1.6129 18 1 12.0801 3.3966 2.6264 19 6 12.4821 3.9002 0.5913 20 7 11.9904 3.9896 -0.6252 21 14 14.2311 4.4591 0.9352 22 1 15.1622 3.3183 0.7426 23 1 14.5928 5.5562 0.0019 24 1 14.3289 4.9471 2.3342 25 6 10.2597 1.4144 0.7590 26 6 9.8318 1.6970 2.2006 27 6 6.1192 3.7501 0.8399 28 6 3.4311 1.2848 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2129 2.3203 0.0097 33 1 1.3341 4.5114 -0.0007 34 1 3.7923 4.6380 -0.0100 35 1 6.5856 2.6654 -1.9720 36 1 5.4398 4.0446 -1.6821 37 1 9.1461 3.8737 -1.9453 38 1 9.9961 2.4727 -1.2503 39 1 8.3952 2.2608 -1.9990 40 1 9.8210 4.6614 0.2924 41 1 8.7527 4.2552 1.6570 42 1 12.5577 4.2770 -1.3577 43 1 9.4743 1.2001 0.0341 44 1 11.1979 0.8805 0.6080 45 1 10.4885 1.3490 2.9978 46 1 8.7652 1.6684 2.4234 47 1 5.4227 4.5793 0.9634 48 1 6.5604 3.4228 1.7814 49 1 4.0207 0.3799 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602837322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:41 Heat of formation + Delta-G solvation = 34.526544 kcal Electronic energy + Delta-G solvation = -26431.588153 eV Core-core repulsion = 22939.310189 eV Total energy + Delta-G solvation = -3492.277964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.41195 -40.44603 -38.85584 -37.69939 -34.90839 -33.94488 -32.03152 -30.85052 -28.90352 -28.16559 -27.48560 -26.27355 -26.03164 -24.10422 -23.44555 -22.72226 -21.82988 -20.63405 -19.51614 -18.62701 -17.98029 -17.20075 -17.04436 -16.63401 -16.61063 -16.59971 -16.26638 -15.54638 -15.29978 -15.18065 -14.57755 -14.33673 -14.26615 -13.90240 -13.76466 -13.33416 -13.27016 -13.09233 -12.98168 -12.83334 -12.74015 -12.61947 -12.52993 -12.31841 -12.12475 -12.02963 -11.82785 -11.73794 -11.50945 -11.35541 -11.10159 -11.02110 -10.64519 -10.37401 -9.77461 -9.66493 -9.08799 -8.94352 -8.03974 -6.15013 0.40752 0.54457 1.41713 1.44252 1.52205 2.41202 2.45088 2.82053 3.09416 3.28785 3.67131 3.76011 3.82042 3.90956 3.96922 4.10480 4.22984 4.26807 4.36109 4.41310 4.45437 4.48468 4.61905 4.63080 4.71995 4.74084 4.78088 4.83711 4.84773 4.86485 4.87606 4.98915 5.09849 5.11698 5.17459 5.22174 5.25592 5.36107 5.39133 5.47180 5.51794 5.56287 5.58190 5.73398 5.79241 5.81369 5.90586 5.91049 6.28713 6.51352 6.54820 6.65310 6.92096 7.50255 8.99833 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.030309 B = 0.002601 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.610204 B =10760.761499 C =11090.038061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.114 3.886 4 C -0.218 4.218 5 C -0.079 4.079 6 C -0.161 4.161 7 C -0.031 4.031 8 C -0.053 4.053 9 H 0.088 0.912 10 C -0.113 4.113 11 C 0.047 3.953 12 H 0.035 0.965 13 N -0.515 5.515 14 C 0.044 3.956 15 C 0.117 3.883 16 C 0.030 3.970 17 C -0.516 4.516 18 H 0.046 0.954 19 C 0.032 3.968 20 N -0.891 5.891 21 Si 0.944 3.056 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.168 4.168 26 C -0.187 4.187 27 C -0.113 4.113 28 C -0.171 4.171 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.001 0.999 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.046 0.954 42 H 0.258 0.742 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.060 0.940 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.948 -1.868 -1.755 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.069 3.931 4 C -0.236 4.236 5 C -0.096 4.096 6 C -0.179 4.179 7 C -0.031 4.031 8 C -0.071 4.071 9 H 0.106 0.894 10 C -0.150 4.150 11 C -0.062 4.062 12 H 0.053 0.947 13 N -0.239 5.239 14 C -0.104 4.104 15 C -0.011 4.011 16 C 0.029 3.971 17 C -0.554 4.554 18 H 0.064 0.936 19 C -0.169 4.169 20 N -0.528 5.528 21 Si 0.771 3.229 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.206 4.206 26 C -0.224 4.224 27 C -0.151 4.151 28 C -0.190 4.190 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.020 0.980 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.120 0.880 48 H 0.078 0.922 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.976 -2.386 -1.730 24.157 hybrid contribution 1.523 0.991 -0.254 1.834 sum -22.454 -1.395 -1.984 22.584 Atomic orbital electron populations 1.23322 0.76494 1.05419 1.02255 1.86046 1.23499 1.27206 1.88825 1.19171 0.92256 0.84920 0.96765 1.21468 1.00974 0.91953 1.09229 1.21243 0.94360 0.97860 0.96175 1.21146 0.94154 0.98309 1.04276 1.19671 0.95079 0.92380 0.95997 1.21258 0.89585 0.98932 0.97375 0.89386 1.23072 0.96815 0.99351 0.95763 1.22760 0.90312 0.94667 0.98489 0.94726 1.61980 1.04852 1.45915 1.11131 1.22258 0.99942 0.98619 0.89614 1.21285 0.91094 0.95325 0.93409 1.18912 0.93133 0.86637 0.98417 1.20831 1.00490 1.40402 0.93658 0.93609 1.25538 1.00981 0.95041 0.95333 1.70052 1.35613 1.47179 0.99935 0.85777 0.81460 0.77793 0.77864 1.20593 1.21089 1.19817 1.22733 0.99610 1.02714 0.95557 1.22784 0.99054 1.07293 0.93258 1.23048 0.96781 0.98229 0.97000 1.20448 0.91961 0.98475 1.08076 0.91685 0.91649 0.86610 0.83418 0.83191 0.84647 0.91337 0.88365 0.98021 0.90689 0.91844 0.95930 0.93578 0.93320 0.88797 0.93584 0.91608 0.89855 0.88018 0.92161 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.32 10.50 -92.32 -0.97 -8.29 16 3 C 0.11 2.58 6.69 22.51 0.15 2.73 16 4 C -0.22 -3.91 9.04 22.37 0.20 -3.71 16 5 C -0.08 -1.35 10.04 22.25 0.22 -1.12 16 6 C -0.16 -3.25 8.61 22.28 0.19 -3.06 16 7 C -0.03 -0.75 5.29 -19.88 -0.11 -0.85 16 8 C -0.05 -1.39 3.89 -11.01 -0.04 -1.44 16 9 H 0.09 2.61 8.09 -2.39 -0.02 2.59 16 10 C -0.11 -2.96 7.01 31.12 0.22 -2.74 16 11 C 0.05 1.48 3.20 45.44 0.15 1.62 16 12 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 13 N -0.51 -19.88 3.61 -893.94 -3.23 -23.11 16 14 C 0.04 1.76 7.85 127.69 1.00 2.76 16 15 C 0.12 5.34 4.86 86.30 0.42 5.76 16 16 C 0.03 1.47 1.69 -52.93 -0.09 1.38 16 17 C -0.52 -28.31 8.80 25.60 0.23 -28.09 16 18 H 0.05 2.54 7.82 -2.90 -0.02 2.52 16 19 C 0.03 1.74 5.33 84.65 0.45 2.19 16 20 N -0.89 -48.71 11.42 21.45 0.24 -48.47 16 21 Si 0.94 43.29 29.54 68.60 2.03 45.31 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 C -0.17 -7.86 8.06 30.60 0.25 -7.61 16 26 C -0.19 -8.27 9.94 30.59 0.30 -7.97 16 27 C -0.11 -3.08 7.02 31.12 0.22 -2.86 16 28 C -0.17 -4.31 9.65 22.37 0.22 -4.10 16 29 H 0.06 0.60 7.65 -2.39 -0.02 0.58 16 30 H 0.06 0.60 7.67 -2.39 -0.02 0.58 16 31 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 33 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.14 2.37 6.65 -2.91 -0.02 2.35 16 35 H 0.07 1.89 6.26 -2.39 -0.01 1.88 16 36 H 0.10 2.21 7.72 -2.38 -0.02 2.19 16 37 H 0.00 0.05 8.10 -2.38 -0.02 0.03 16 38 H 0.07 3.50 5.04 -2.39 -0.01 3.49 16 39 H 0.06 2.21 6.54 -2.39 -0.02 2.19 16 40 H 0.02 1.18 6.79 -2.39 -0.02 1.16 16 41 H 0.05 2.02 7.62 -2.39 -0.02 2.00 16 42 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 43 H 0.09 4.17 5.59 -2.39 -0.01 4.15 16 44 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.08 3.40 8.14 -2.38 -0.02 3.38 16 47 H 0.10 2.30 6.30 -2.39 -0.02 2.29 16 48 H 0.06 1.84 7.97 -2.39 -0.02 1.83 16 49 H 0.12 3.10 8.05 -2.91 -0.02 3.08 16 Total: -1.00 -60.47 380.45 4.09 -56.37 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.93 Total: 23.94 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 5.09 Total: -45.76 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -2.98 Total: -71.57 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.97 Total: -8.29 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -60.47 4.09 -56.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602837322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.900 kcal (2) G-P(sol) polarization free energy of solvation -60.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds