Wall clock time and date at job start Tue Mar 31 2020 11:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47441 * 2 1 4 4 C 1.50705 * 109.47278 * 119.99748 * 2 1 3 5 5 O 1.21280 * 119.99762 * 119.99838 * 4 2 1 6 6 N 1.34769 * 120.00223 * 300.00468 * 4 2 1 7 7 C 1.46505 * 120.00238 * 185.00449 * 6 4 2 8 8 H 1.08998 * 109.46688 * 326.18745 * 7 6 4 9 9 C 1.53002 * 109.46891 * 206.18958 * 7 6 4 10 10 C 1.50701 * 109.47061 * 65.34629 * 9 7 6 11 11 H 1.07996 * 120.00256 * 355.24192 * 10 9 7 12 12 C 1.37883 * 119.99623 * 175.24390 * 10 9 7 13 13 N 1.31507 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99623 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47561 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47316 * 120.00194 * 14 12 10 17 17 H 1.48502 * 109.46927 * 239.99948 * 14 12 10 18 18 C 1.50696 * 109.46904 * 86.18944 * 7 6 4 19 19 C 1.38240 * 120.00041 * 220.00275 * 18 7 6 20 20 C 1.38229 * 120.00420 * 180.02562 * 19 18 7 21 21 C 1.38241 * 119.99809 * 359.95178 * 20 19 18 22 22 C 1.38231 * 119.99794 * 0.02562 * 21 20 19 23 23 C 1.38233 * 120.00183 * 39.98032 * 18 7 6 24 24 C 1.53003 * 109.47398 * 240.00095 * 2 1 3 25 25 C 1.54263 * 110.03332 * 177.16830 * 24 2 1 26 26 C 1.54893 * 104.19420 * 217.10694 * 25 24 2 27 27 C 1.54888 * 102.74834 * 37.94019 * 26 25 24 28 28 C 1.53870 * 110.03120 * 59.99767 * 24 2 1 29 29 H 1.09006 * 109.47202 * 299.99935 * 1 2 3 30 30 H 1.08999 * 109.47132 * 60.00122 * 1 2 3 31 31 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00046 * 5.00627 * 6 4 2 33 33 H 1.09002 * 109.46446 * 185.34316 * 9 7 6 34 34 H 1.08999 * 109.47243 * 305.33718 * 9 7 6 35 35 H 0.97005 * 119.99791 * 180.02562 * 13 12 10 36 36 H 1.08005 * 119.99458 * 359.97271 * 19 18 7 37 37 H 1.07994 * 120.00221 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.99640 * 179.72287 * 21 20 19 39 39 H 1.08006 * 120.00008 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00466 * 359.97438 * 23 18 7 41 41 H 1.09005 * 110.01255 * 298.60596 * 24 2 1 42 42 H 1.09004 * 110.48644 * 335.77925 * 25 24 2 43 43 H 1.08998 * 110.49066 * 98.42809 * 25 24 2 44 44 H 1.09001 * 110.75341 * 279.62861 * 26 25 24 45 45 H 1.08998 * 110.75847 * 156.26191 * 26 25 24 46 46 H 1.09006 * 110.48423 * 203.38027 * 27 26 25 47 47 H 1.08994 * 110.59869 * 80.79496 * 27 26 25 48 48 H 1.09003 * 110.03465 * 238.57093 * 28 24 2 49 49 H 1.09010 * 110.03367 * 0.02562 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.2829 -0.8731 3.6488 8 1 2.4190 -1.9400 3.4721 9 6 1.3397 -0.6688 4.8360 10 6 0.0526 -1.4127 4.5888 11 1 -0.1103 -1.9110 3.6446 12 6 -0.9170 -1.4571 5.5681 13 7 -0.7183 -0.8506 6.7180 14 14 -2.5126 -2.3785 5.2614 15 1 -2.4894 -2.9689 3.8990 16 1 -2.6608 -3.4604 6.2679 17 1 -3.6565 -1.4382 5.3734 18 6 3.6164 -0.2399 3.9519 19 6 4.6731 -1.0236 4.3765 20 6 5.8962 -0.4429 4.6550 21 6 6.0630 0.9215 4.5080 22 6 5.0065 1.7051 4.0830 23 6 3.7832 1.1244 3.8049 24 6 2.0400 -0.7212 -1.2493 25 6 3.5809 -0.6670 -1.2986 26 6 3.9069 -0.4938 -2.8029 27 6 2.7854 0.4580 -3.2882 28 6 1.5342 -0.0060 -2.5142 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.0908 0.4939 2.5449 33 1 1.8102 -1.0482 5.7431 34 1 1.1284 0.3940 4.9536 35 1 -1.4004 -0.8822 7.4071 36 1 4.5428 -2.0896 4.4914 37 1 6.7216 -1.0551 4.9871 38 1 7.0173 1.3758 4.7299 39 1 5.1366 2.7712 3.9685 40 1 2.9580 1.7366 3.4724 41 1 1.7021 -1.7576 -1.2458 42 1 3.9512 0.1844 -0.7275 43 1 4.0077 -1.5960 -0.9203 44 1 3.8532 -1.4505 -3.3224 45 1 4.8869 -0.0354 -2.9355 46 1 2.6316 0.3501 -4.3619 47 1 3.0259 1.4918 -3.0402 48 1 0.9515 -0.6953 -3.1253 49 1 0.9257 0.8553 -2.2382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610976314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:04 Heat of formation + Delta-G solvation = -48.548366 kcal Electronic energy + Delta-G solvation = -27001.378252 eV Core-core repulsion = 23505.497890 eV Total energy + Delta-G solvation = -3495.880362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -40.00557 -38.86238 -37.56436 -35.10550 -33.36644 -32.63508 -30.87396 -30.42787 -28.78659 -28.70865 -27.40719 -25.10416 -23.72945 -22.28706 -21.94643 -20.60245 -20.46346 -19.65187 -19.07821 -17.12583 -16.63106 -16.16180 -15.75171 -15.24687 -15.11970 -14.81637 -14.51069 -14.36441 -13.91476 -13.38149 -13.26371 -13.09779 -13.06176 -12.92092 -12.51130 -12.42109 -12.11192 -12.07835 -11.58418 -11.35290 -11.12583 -11.10703 -10.98631 -10.92510 -10.84868 -10.73694 -10.61434 -10.57596 -10.45778 -10.41317 -10.29168 -9.77950 -9.29528 -9.10335 -8.54118 -8.45581 -8.33665 -8.17565 -6.08740 -4.11737 1.78301 1.80305 3.21459 3.26003 3.34674 3.38975 3.78875 4.24403 4.40198 4.60595 4.65670 4.74485 5.11951 5.17222 5.25084 5.27458 5.27879 5.28477 5.37673 5.47556 5.52109 5.58554 5.64257 5.68237 5.71977 5.77495 5.86121 5.90964 5.91457 5.94759 5.98607 6.07280 6.17310 6.24138 6.27495 6.34358 6.36981 6.44374 6.48457 6.59001 6.61091 6.84840 6.85759 6.97930 7.13279 7.40809 7.50693 7.65316 7.88448 8.20209 8.27730 8.85846 8.94750 9.53280 11.01931 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008983 B = 0.005066 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.152327 B = 5525.555716 C = 8010.643644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 H 0.091 0.909 4 C 0.515 3.485 5 O -0.547 6.547 6 N -0.702 5.702 7 C 0.183 3.817 8 H 0.088 0.912 9 C 0.024 3.976 10 C -0.517 4.517 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.070 4.070 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.108 4.108 24 C -0.069 4.069 25 C -0.110 4.110 26 C -0.128 4.128 27 C -0.124 4.124 28 C -0.122 4.122 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.036 0.964 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 5.704 -14.104 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.109 0.891 4 C 0.301 3.699 5 O -0.425 6.425 6 N -0.351 5.351 7 C 0.078 3.922 8 H 0.106 0.894 9 C -0.014 4.014 10 C -0.556 4.556 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.072 4.072 19 C -0.127 4.127 20 C -0.141 4.141 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.127 4.127 24 C -0.088 4.088 25 C -0.147 4.147 26 C -0.165 4.165 27 C -0.162 4.162 28 C -0.160 4.160 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.552 5.031 -13.994 17.155 hybrid contribution -1.255 -0.053 0.189 1.270 sum 7.297 4.978 -13.805 16.389 Atomic orbital electron populations 1.21850 0.93127 1.03023 1.02494 1.21453 0.97343 1.00313 0.93444 0.89126 1.20488 0.80206 0.84521 0.84713 1.90629 1.38974 1.26013 1.86837 1.45982 1.47214 1.36686 1.05241 1.20229 0.88865 0.96647 0.86431 0.89424 1.19391 0.93027 0.97685 0.91263 1.21173 1.00535 1.33110 1.00753 0.92308 1.24985 0.98579 0.95518 0.95067 1.69969 1.34529 1.43371 1.05256 0.86560 0.83529 0.79716 0.78369 1.19724 1.20992 1.21045 1.20584 0.96166 0.93864 0.96552 1.21029 0.92528 0.99910 0.99266 1.21041 0.97247 0.94986 1.00787 1.20989 0.98600 0.94103 1.01664 1.21039 0.93514 0.99245 1.00528 1.20903 0.96985 0.94577 1.00200 1.21538 0.95701 0.99537 0.92055 1.22353 0.94933 1.02472 0.94986 1.22539 0.98002 0.99210 0.96782 1.22356 0.95422 0.99240 0.99167 1.22289 0.97520 1.00102 0.96089 0.91662 0.91731 0.92003 0.76682 0.94566 0.96166 0.92956 0.86212 0.86641 0.86875 0.86780 0.86621 0.90499 0.92263 0.90663 0.91793 0.92055 0.92188 0.91904 0.91947 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.83 37.15 0.33 -1.46 16 2 C -0.10 -1.37 2.03 -91.77 -0.19 -1.56 16 3 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 4 C 0.52 8.89 6.87 -10.99 -0.08 8.82 16 5 O -0.55 -11.17 14.16 5.56 0.08 -11.09 16 6 N -0.70 -12.49 3.95 -54.93 -0.22 -12.71 16 7 C 0.18 3.72 2.17 -69.08 -0.15 3.57 16 8 H 0.09 1.98 7.34 -51.93 -0.38 1.60 16 9 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 10 C -0.52 -13.69 8.84 -34.44 -0.30 -13.99 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 14 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.07 -1.31 4.93 -104.63 -0.52 -1.82 16 19 C -0.11 -1.90 9.67 -39.58 -0.38 -2.29 16 20 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 21 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 23 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 24 C -0.07 -0.88 2.11 -89.50 -0.19 -1.06 16 25 C -0.11 -1.43 5.18 -25.07 -0.13 -1.56 16 26 C -0.13 -1.33 6.91 -24.74 -0.17 -1.50 16 27 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 28 C -0.12 -1.23 5.91 -25.62 -0.15 -1.38 16 29 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 30 H 0.06 0.64 6.48 -51.93 -0.34 0.30 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.40 6.53 7.90 -40.82 -0.32 6.21 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.12 1.80 7.72 -52.49 -0.41 1.39 16 41 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 42 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 43 H 0.07 1.14 7.45 -51.93 -0.39 0.75 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.62 6.33 -51.92 -0.33 0.29 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -30.22 390.05 -10.84 -41.05 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.41 Total: 8.30 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -3.88 Total: -22.58 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.52 Total: -37.61 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.22 -10.84 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610976314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.495 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds