Wall clock time and date at job start Tue Mar 31 2020 11:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47441 * 2 1 4 4 C 1.50705 * 109.47278 * 119.99748 * 2 1 3 5 5 O 1.21280 * 119.99762 * 119.99838 * 4 2 1 6 6 N 1.34769 * 120.00223 * 300.00468 * 4 2 1 7 7 C 1.46505 * 120.00238 * 185.00449 * 6 4 2 8 8 H 1.08998 * 109.46688 * 326.18745 * 7 6 4 9 9 C 1.53002 * 109.46891 * 206.18958 * 7 6 4 10 10 C 1.50701 * 109.47061 * 65.34629 * 9 7 6 11 11 H 1.07996 * 120.00256 * 355.24192 * 10 9 7 12 12 C 1.37883 * 119.99623 * 175.24390 * 10 9 7 13 13 N 1.31507 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99623 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47561 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47316 * 120.00194 * 14 12 10 17 17 H 1.48502 * 109.46927 * 239.99948 * 14 12 10 18 18 C 1.50696 * 109.46904 * 86.18944 * 7 6 4 19 19 C 1.38240 * 120.00041 * 220.00275 * 18 7 6 20 20 C 1.38229 * 120.00420 * 180.02562 * 19 18 7 21 21 C 1.38241 * 119.99809 * 359.95178 * 20 19 18 22 22 C 1.38231 * 119.99794 * 0.02562 * 21 20 19 23 23 C 1.38233 * 120.00183 * 39.98032 * 18 7 6 24 24 C 1.53003 * 109.47398 * 240.00095 * 2 1 3 25 25 C 1.54263 * 110.03332 * 177.16830 * 24 2 1 26 26 C 1.54893 * 104.19420 * 217.10694 * 25 24 2 27 27 C 1.54888 * 102.74834 * 37.94019 * 26 25 24 28 28 C 1.53870 * 110.03120 * 59.99767 * 24 2 1 29 29 H 1.09006 * 109.47202 * 299.99935 * 1 2 3 30 30 H 1.08999 * 109.47132 * 60.00122 * 1 2 3 31 31 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00046 * 5.00627 * 6 4 2 33 33 H 1.09002 * 109.46446 * 185.34316 * 9 7 6 34 34 H 1.08999 * 109.47243 * 305.33718 * 9 7 6 35 35 H 0.97005 * 119.99791 * 180.02562 * 13 12 10 36 36 H 1.08005 * 119.99458 * 359.97271 * 19 18 7 37 37 H 1.07994 * 120.00221 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.99640 * 179.72287 * 21 20 19 39 39 H 1.08006 * 120.00008 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00466 * 359.97438 * 23 18 7 41 41 H 1.09005 * 110.01255 * 298.60596 * 24 2 1 42 42 H 1.09004 * 110.48644 * 335.77925 * 25 24 2 43 43 H 1.08998 * 110.49066 * 98.42809 * 25 24 2 44 44 H 1.09001 * 110.75341 * 279.62861 * 26 25 24 45 45 H 1.08998 * 110.75847 * 156.26191 * 26 25 24 46 46 H 1.09006 * 110.48423 * 203.38027 * 27 26 25 47 47 H 1.08994 * 110.59869 * 80.79496 * 27 26 25 48 48 H 1.09003 * 110.03465 * 238.57093 * 28 24 2 49 49 H 1.09010 * 110.03367 * 0.02562 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.2829 -0.8731 3.6488 8 1 2.4190 -1.9400 3.4721 9 6 1.3397 -0.6688 4.8360 10 6 0.0526 -1.4127 4.5888 11 1 -0.1103 -1.9110 3.6446 12 6 -0.9170 -1.4571 5.5681 13 7 -0.7183 -0.8506 6.7180 14 14 -2.5126 -2.3785 5.2614 15 1 -2.4894 -2.9689 3.8990 16 1 -2.6608 -3.4604 6.2679 17 1 -3.6565 -1.4382 5.3734 18 6 3.6164 -0.2399 3.9519 19 6 4.6731 -1.0236 4.3765 20 6 5.8962 -0.4429 4.6550 21 6 6.0630 0.9215 4.5080 22 6 5.0065 1.7051 4.0830 23 6 3.7832 1.1244 3.8049 24 6 2.0400 -0.7212 -1.2493 25 6 3.5809 -0.6670 -1.2986 26 6 3.9069 -0.4938 -2.8029 27 6 2.7854 0.4580 -3.2882 28 6 1.5342 -0.0060 -2.5142 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.0908 0.4939 2.5449 33 1 1.8102 -1.0482 5.7431 34 1 1.1284 0.3940 4.9536 35 1 -1.4004 -0.8822 7.4071 36 1 4.5428 -2.0896 4.4914 37 1 6.7216 -1.0551 4.9871 38 1 7.0173 1.3758 4.7299 39 1 5.1366 2.7712 3.9685 40 1 2.9580 1.7366 3.4724 41 1 1.7021 -1.7576 -1.2458 42 1 3.9512 0.1844 -0.7275 43 1 4.0077 -1.5960 -0.9203 44 1 3.8532 -1.4505 -3.3224 45 1 4.8869 -0.0354 -2.9355 46 1 2.6316 0.3501 -4.3619 47 1 3.0259 1.4918 -3.0402 48 1 0.9515 -0.6953 -3.1253 49 1 0.9257 0.8553 -2.2382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610976314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:01 Heat of formation + Delta-G solvation = -63.085815 kcal Electronic energy + Delta-G solvation = -27002.008643 eV Core-core repulsion = 23505.497890 eV Total energy + Delta-G solvation = -3496.510753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.34747 -40.08277 -38.69520 -36.71377 -34.80801 -34.31590 -32.22358 -31.68035 -30.53536 -29.60561 -28.37146 -26.82747 -24.97537 -23.80005 -23.36256 -21.83668 -21.42426 -21.06863 -20.14899 -18.71244 -18.17408 -17.66596 -17.12263 -16.58797 -16.30634 -16.18499 -16.00603 -15.62001 -15.18172 -14.70492 -14.55636 -14.20821 -14.19126 -14.10304 -14.08183 -13.70252 -13.66896 -13.45400 -13.10202 -12.93158 -12.63124 -12.47407 -12.36758 -12.15037 -12.02147 -11.87801 -11.81069 -11.77380 -11.61893 -11.51078 -11.42727 -11.31080 -11.21347 -10.66984 -10.48636 -9.90325 -9.76094 -9.52624 -8.21515 -6.31346 0.50431 0.54942 1.36538 1.39259 1.50735 1.82047 2.38582 2.40461 2.96981 3.12933 3.63157 3.74155 3.77852 3.97166 4.02783 4.06401 4.20215 4.27110 4.27885 4.31676 4.43392 4.53605 4.61106 4.65579 4.70409 4.76245 4.78274 4.78951 4.83337 4.90057 4.93604 5.06446 5.11701 5.13783 5.17510 5.19375 5.28129 5.30336 5.33289 5.42532 5.46486 5.54022 5.59091 5.60564 5.62685 5.64214 5.77200 5.92898 6.15380 6.19955 6.77476 6.81513 7.37410 7.44559 8.89547 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008983 B = 0.005066 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.152327 B = 5525.555716 C = 8010.643644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.115 0.885 4 C 0.509 3.491 5 O -0.584 6.584 6 N -0.699 5.699 7 C 0.199 3.801 8 H 0.053 0.947 9 C 0.038 3.962 10 C -0.526 4.526 11 H 0.052 0.948 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.273 1.273 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.069 4.069 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.042 0.958 32 H 0.406 0.594 33 H 0.003 0.997 34 H 0.010 0.990 35 H 0.264 0.736 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 7.874 -15.950 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.132 0.868 4 C 0.297 3.703 5 O -0.464 6.464 6 N -0.348 5.348 7 C 0.094 3.906 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.565 4.565 11 H 0.070 0.930 12 C -0.187 4.187 13 N -0.566 5.566 14 Si 0.781 3.219 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.099 4.099 19 C -0.154 4.154 20 C -0.141 4.141 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.089 4.089 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.156 4.156 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.242 0.758 33 H 0.021 0.979 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.140 0.860 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.783 7.214 -15.853 19.506 hybrid contribution -1.226 -0.753 0.813 1.653 sum 7.557 6.461 -15.039 18.029 Atomic orbital electron populations 1.21860 0.91974 1.02310 1.04011 1.21485 0.98099 1.00811 0.91141 0.86756 1.21323 0.79356 0.84115 0.85470 1.90615 1.40642 1.27834 1.87328 1.45900 1.47377 1.36669 1.04879 1.19671 0.89641 0.95309 0.86001 0.92848 1.19129 0.92887 0.96319 0.91589 1.21407 1.01530 1.33033 1.00481 0.92970 1.25768 1.01878 0.96313 0.94786 1.70077 1.35757 1.44680 1.06111 0.85542 0.79686 0.78510 0.78164 1.19411 1.20832 1.19883 1.20459 0.95342 0.95132 0.98931 1.21164 0.93892 0.99694 1.00665 1.21372 0.96734 0.96146 0.99898 1.21468 0.99992 0.93514 0.99704 1.21450 0.92513 1.01043 0.99067 1.21070 0.98477 0.93683 1.00609 1.21532 0.95435 0.98578 0.93307 1.22291 0.95225 1.00444 0.96890 1.22524 0.99203 0.99885 0.94560 1.22353 0.94083 0.99190 1.00015 1.22267 0.98152 1.00463 0.94534 0.91849 0.88490 0.93828 0.75818 0.97911 0.97142 0.92728 0.87346 0.84000 0.83076 0.83423 0.85983 0.92982 0.92884 0.93980 0.91778 0.91134 0.90473 0.90968 0.91235 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.83 71.98 0.64 -2.67 16 2 C -0.09 -2.42 2.03 -11.54 -0.02 -2.44 16 3 H 0.11 2.43 8.12 -2.39 -0.02 2.41 16 4 C 0.51 18.27 6.87 87.66 0.60 18.87 16 5 O -0.58 -25.42 14.16 -3.03 -0.04 -25.46 16 6 N -0.70 -25.95 3.95 -446.10 -1.76 -27.71 16 7 C 0.20 8.67 2.17 44.24 0.10 8.77 16 8 H 0.05 2.65 7.34 -2.39 -0.02 2.63 16 9 C 0.04 1.95 4.50 29.85 0.13 2.08 16 10 C -0.53 -28.96 8.84 25.60 0.23 -28.73 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C 0.01 0.62 5.46 84.66 0.46 1.08 16 13 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 14 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C -0.10 -3.78 4.93 -19.87 -0.10 -3.88 16 19 C -0.14 -4.97 9.67 22.27 0.22 -4.75 16 20 C -0.12 -3.62 10.05 22.27 0.22 -3.39 16 21 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 22 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 23 C -0.12 -3.99 9.32 22.27 0.21 -3.78 16 24 C -0.07 -1.72 2.11 -10.07 -0.02 -1.74 16 25 C -0.11 -2.90 5.18 31.67 0.16 -2.74 16 26 C -0.12 -2.41 6.91 31.89 0.22 -2.19 16 27 C -0.12 -1.85 6.83 31.67 0.22 -1.64 16 28 C -0.12 -2.03 5.91 31.32 0.19 -1.84 16 29 H 0.06 1.48 7.46 -2.38 -0.02 1.46 16 30 H 0.10 1.61 6.48 -2.39 -0.02 1.59 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 13.65 7.90 -92.71 -0.73 12.92 16 33 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 36 H 0.11 4.04 8.04 -2.91 -0.02 4.02 16 37 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.12 3.76 7.72 -2.91 -0.02 3.74 16 41 H 0.05 1.54 8.08 -2.38 -0.02 1.52 16 42 H 0.05 1.42 7.84 -2.39 -0.02 1.40 16 43 H 0.04 1.35 7.45 -2.39 -0.02 1.34 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.08 1.20 6.33 -2.38 -0.02 1.19 16 Total: -1.00 -68.97 390.05 4.58 -64.39 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.18 Total: 32.31 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.89 Total: -35.19 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.48 Total: -81.91 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.04 Total: -25.46 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.97 4.58 -64.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610976314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.302 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds